Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:39:16 (3604081): wrapper (7.7.26015): starting
06:39:16 (3604081): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 06:39:17] Arguments: --nthreads 8
[2026-01-09 06:39:17] Threads: 8
[2026-01-09 06:39:17] Checking for CVMFS
[2026-01-09 06:39:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 06:39:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 06:39:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 06:39:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 06:39:20] 2.13.3.0 5206 70448 741856 154942 2 343 25549139 40960000 55198 16776704 0 642309834 99.813 308551332 29792 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 06:39:20] CVMFS is ok
[2026-01-09 06:39:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 06:39:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 06:39:20] Further information can be found at the LHC@home message board.
[2026-01-09 06:39:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 06:39:20] Checking for apptainer binary...
[2026-01-09 06:39:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 06:39:20] Running /usr/bin/apptainer --version
[2026-01-09 06:39:20] apptainer version 1.4.5-2.el9
[2026-01-09 06:39:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 06:39:21] lc-12-9.aglt2.org
[2026-01-09 06:39:21] apptainer works
[2026-01-09 06:39:21] Set ATHENA_PROC_NUMBER=8
[2026-01-09 06:39:21] Set ATHENA_CORE_NUMBER=8
[2026-01-09 06:39:21] Starting ATLAS job with PandaID=6963147709
[2026-01-09 06:39:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 13:21:26]  *** The last 200 lines of the pilot log: ***
[2026-01-09 13:21:26] 2026-01-09 18:20:44,459 | INFO     | monitor loop #1206: job 0:6963147709 is in state 'finished'
[2026-01-09 13:21:26] 2026-01-09 18:20:44,459 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:21:26] 2026-01-09 18:20:46,974 | INFO     | monitor loop #1207: job 0:6963147709 is in state 'finished'
[2026-01-09 13:21:26] 2026-01-09 18:20:46,974 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:21:26] 2026-01-09 18:20:47,519 | INFO     | PID=3631961 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 13:21:26] 2026-01-09 18:20:47,521 | INFO     | .. there are 89 such processes running
[2026-01-09 13:21:26] 2026-01-09 18:20:48,525 | INFO     | time since job start (24017s) is within the limit (349056.0s)
[2026-01-09 13:21:26] 2026-01-09 18:20:49,482 | INFO     | monitor loop #1208: job 0:6963147709 is in state 'finished'
[2026-01-09 13:21:26] 2026-01-09 18:20:49,482 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 13:21:26] 2026-01-09 18:20:49,734 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 13:21:26] 2026-01-09 18:20:49,744 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2873.4182812499985
[2026-01-09 13:21:26] 2026-01-09 18:20:49,836 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963147709/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 13:21:26] 2026-01-09 18:20:49,837 | INFO     | extracted standard info from prmon json
[2026-01-09 13:21:26] 2026-01-09 18:20:49,837 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 13:21:26] 2026-01-09 18:20:49,837 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 13:21:26] 2026-01-09 18:20:49,838 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 13:21:26] 2026-01-09 18:20:49,838 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 13:21:26] 2026-01-09 18:20:49,890 | INFO     | fitting pss+swap vs Time
[2026-01-09 13:21:26] 2026-01-09 18:20:49,890 | INFO     | sum of square deviations: 18535287667.524426
[2026-01-09 13:21:26] 2026-01-09 18:20:49,922 | INFO     | sum of deviations: 69956122543.8824
[2026-01-09 13:21:26] 2026-01-09 18:20:49,922 | INFO     | mean x: 1767970884.163683
[2026-01-09 13:21:26] 2026-01-09 18:20:49,922 | INFO     | mean y: 2500001.470588235
[2026-01-09 13:21:26] 2026-01-09 18:20:49,922 | INFO     | intersect: -6670198585.412983
[2026-01-09 13:21:26] 2026-01-09 18:20:49,923 | INFO     | chi2: 3.3899642819096707
[2026-01-09 13:21:26] 2026-01-09 18:20:49,924 | INFO     | sum of square deviations: 17833251690.217674
[2026-01-09 13:21:26] 2026-01-09 18:20:49,948 | INFO     | sum of deviations: 93639498882.1399
[2026-01-09 13:21:26] 2026-01-09 18:20:49,949 | INFO     | mean x: 1767970731.6632125
[2026-01-09 13:21:26] 2026-01-09 18:20:49,949 | INFO     | mean y: 2505090.8549222797
[2026-01-09 13:21:26] 2026-01-09 18:20:49,949 | INFO     | intersect: -9280821148.635433
[2026-01-09 13:21:26] 2026-01-09 18:20:49,966 | INFO     | chi2: 2.715639208810441
[2026-01-09 13:21:26] 2026-01-09 18:20:49,966 | INFO     | current chi2=2.715639208810441 (change=19.891804662890486 %)
[2026-01-09 13:21:26] 2026-01-09 18:20:49,966 | INFO     | right removable region: 385
[2026-01-09 13:21:26] 2026-01-09 18:20:49,967 | INFO     | sum of square deviations: 17833236379.888573
[2026-01-09 13:21:26] 2026-01-09 18:20:49,970 | INFO     | sum of deviations: -25341931504.228012
[2026-01-09 13:21:26] 2026-01-09 18:20:49,970 | INFO     | mean x: 1767971036.6658032
[2026-01-09 13:21:26] 2026-01-09 18:20:49,975 | INFO     | mean y: 2520645.316062176
[2026-01-09 13:21:26] 2026-01-09 18:20:49,975 | INFO     | intersect: 2514896972.2048397
[2026-01-09 13:21:26] 2026-01-09 18:20:49,975 | INFO     | chi2: 0.9784487023087929
[2026-01-09 13:21:26] 2026-01-09 18:20:49,976 | INFO     | current chi2=0.9784487023087929 (change=71.13690231102959 %)
[2026-01-09 13:21:26] 2026-01-09 18:20:49,976 | INFO     | sum of square deviations: 17149138917.249388
[2026-01-09 13:21:26] 2026-01-09 18:20:49,986 | INFO     | sum of deviations: -44659928018.23886
[2026-01-09 13:21:26] 2026-01-09 18:20:49,986 | INFO     | mean x: 1767971189.167979
[2026-01-09 13:21:26] 2026-01-09 18:20:49,986 | INFO     | mean y: 2524948.1443569553
[2026-01-09 13:21:26] 2026-01-09 18:20:49,986 | INFO     | intersect: 4606689998.504003
[2026-01-09 13:21:26] 2026-01-09 18:20:49,987 | INFO     | chi2: 0.8817673188530523
[2026-01-09 13:21:26] 2026-01-09 18:20:49,987 | INFO     | current chi2=0.8817673188530523 (change=9.8810886281117 %)
[2026-01-09 13:21:26] 2026-01-09 18:20:49,987 | INFO     | left removable region: 20
[2026-01-09 13:21:26] 2026-01-09 18:20:49,987 | INFO     | sum of square deviations: 15078059716.13703
[2026-01-09 13:21:26] 2026-01-09 18:20:49,997 | INFO     | sum of deviations: -39716307510.26029
[2026-01-09 13:21:26] 2026-01-09 18:20:49,997 | INFO     | mean x: 1767971311.1643836
[2026-01-09 13:21:26] 2026-01-09 18:20:49,997 | INFO     | mean y: 2535224.087671233
[2026-01-09 13:21:26] 2026-01-09 18:20:49,997 | INFO     | intersect: 4659453526.936275
[2026-01-09 13:21:26] 2026-01-09 18:20:49,998 | INFO     | chi2: 0.13143816448580314
[2026-01-09 13:21:26] 2026-01-09 18:20:49,998 | INFO     | current memory leak: -2.63 B/s (using 365 data points, chi2=0.13)
[2026-01-09 13:21:26] 2026-01-09 18:20:50,014 | INFO     | could have reported an average CPU frequency of 2795 MHz (17 samples)
[2026-01-09 13:21:26] 2026-01-09 18:20:50,014 | INFO     | ..............................
[2026-01-09 13:21:26] 2026-01-09 18:20:50,015 | INFO     | . Timing measurements:
[2026-01-09 13:21:26] 2026-01-09 18:20:50,015 | INFO     | . get job = 0 s
[2026-01-09 13:21:26] 2026-01-09 18:20:50,015 | INFO     | . initial setup = 5 s
[2026-01-09 13:21:26] 2026-01-09 18:20:50,015 | INFO     | . payload setup = 43 s
[2026-01-09 13:21:26] 2026-01-09 18:20:50,015 | INFO     | . stage-in = 0 s
[2026-01-09 13:21:26] 2026-01-09 18:20:50,015 | INFO     | . payload execution = 23850 s
[2026-01-09 13:21:26] 2026-01-09 18:20:50,015 | INFO     | . stage-out = 4 s
[2026-01-09 13:21:26] 2026-01-09 18:20:50,015 | INFO     | . log creation = 0 s
[2026-01-09 13:21:26] 2026-01-09 18:20:50,015 | INFO     | ..............................
[2026-01-09 13:21:26] 2026-01-09 18:20:50,327 | INFO     | 
[2026-01-09 13:21:26] 2026-01-09 18:20:50,327 | INFO     | job summary report
[2026-01-09 13:21:26] 2026-01-09 18:20:50,327 | INFO     | --------------------------------------------------
[2026-01-09 13:21:26] 2026-01-09 18:20:50,327 | INFO     | PanDA job id: 6963147709
[2026-01-09 13:21:26] 2026-01-09 18:20:50,327 | INFO     | task id: 47898826
[2026-01-09 13:21:26] 2026-01-09 18:20:50,327 | INFO     | errors: (none)
[2026-01-09 13:21:26] 2026-01-09 18:20:50,327 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 13:21:26] 2026-01-09 18:20:50,327 | INFO     | pilot state: finished 
[2026-01-09 13:21:26] 2026-01-09 18:20:50,327 | INFO     | transexitcode: 0
[2026-01-09 13:21:26] 2026-01-09 18:20:50,327 | INFO     | exeerrorcode: 0
[2026-01-09 13:21:26] 2026-01-09 18:20:50,327 | INFO     | exeerrordiag: 
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | exitcode: 0
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | exitmsg: OK
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | cpuconsumptiontime: 60900 s
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | nevents: 400
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | neventsw: 0
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | pid: 3688087
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | pgrp: 3688087
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | corecount: 8
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | event service: False
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | sizes: {0: 2283742, 1: 2283826, 2: 2284025, 3: 2284025, 14: 2284053, 25: 2284081, 32: 2284499, 36: 2284527, 23898: 2319426, 23903: 2328424, 23906: 2328480, 23941: 
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | --------------------------------------------------
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | 
[2026-01-09 13:21:26] 2026-01-09 18:20:50,328 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 13:21:26] 2026-01-09 18:20:50,457 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,457 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,457 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,457 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,457 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,458 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,459 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 13:21:26] 2026-01-09 18:20:50,459 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,459 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 13:21:26] 2026-01-09 18:20:50,459 | INFO     | job 6963147709 has completed (purged errors)
[2026-01-09 13:21:26] 2026-01-09 18:20:50,459 | INFO     | overall cleanup function is called
[2026-01-09 13:21:26] 2026-01-09 18:20:51,484 | INFO     | --- collectZombieJob: --- 10, [3688087]
[2026-01-09 13:21:26] 2026-01-09 18:20:51,484 | INFO     | zombie collector waiting for pid 3688087
[2026-01-09 13:21:26] 2026-01-09 18:20:51,484 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 13:21:26] 2026-01-09 18:20:51,484 | INFO     | collected zombie processes
[2026-01-09 13:21:26] 2026-01-09 18:20:51,484 | INFO     | will attempt to kill all subprocesses of pid=3688087
[2026-01-09 13:21:26] 2026-01-09 18:20:54,558 | INFO     | process IDs to be killed: [3688087] (in reverse order)
[2026-01-09 13:21:26] 2026-01-09 18:20:55,065 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 13:21:26] 2026-01-09 18:20:55,065 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 13:21:26] 2026-01-09 18:20:55,106 | INFO     | did not find any defunct processes belonging to 3688087
[2026-01-09 13:21:26] 2026-01-09 18:20:55,277 | INFO     | did not find any defunct processes belonging to 3688087
[2026-01-09 13:21:26] 2026-01-09 18:20:55,277 | INFO     | ready for new job
[2026-01-09 13:21:26] 2026-01-09 18:20:55,278 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 13:21:26] 2026-01-09 18:20:55,280 | INFO     | ***************************************
[2026-01-09 13:21:26] 2026-01-09 18:20:55,280 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 13:21:26] 2026-01-09 18:20:55,280 | INFO     | ***************************************
[2026-01-09 13:21:26] 2026-01-09 18:20:55,280 | INFO     | 
[2026-01-09 13:21:26] 2026-01-09 18:20:55,286 | INFO     | architecture information:
[2026-01-09 13:21:26] 2026-01-09 18:20:55,290 | INFO     | executing command: cat /etc/os-release
[2026-01-09 13:21:26] 2026-01-09 18:20:55,377 | INFO     | cat /etc/os-release:
[2026-01-09 13:21:26] NAME="CentOS Linux"
[2026-01-09 13:21:26] VERSION="7 (Core)"
[2026-01-09 13:21:26] ID="centos"
[2026-01-09 13:21:26] ID_LIKE="rhel fedora"
[2026-01-09 13:21:26] VERSION_ID="7"
[2026-01-09 13:21:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 13:21:26] ANSI_COLOR="0;31"
[2026-01-09 13:21:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 13:21:26] HOME_URL="https://www.centos.org/"
[2026-01-09 13:21:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 13:21:26] 
[2026-01-09 13:21:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 13:21:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 13:21:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 13:21:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 13:21:26] 
[2026-01-09 13:21:26] 2026-01-09 18:20:55,377 | INFO     | ***************************************
[2026-01-09 13:21:26] 2026-01-09 18:20:55,881 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 13:21:26] 2026-01-09 18:20:56,002 | INFO     | sufficient remaining disk space (413671620608 B)
[2026-01-09 13:21:26] 2026-01-09 18:20:56,002 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 13:21:26] 2026-01-09 18:20:56,002 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 13:21:26] 2026-01-09 18:20:56,002 | INFO     | update_server=False
[2026-01-09 13:21:26] 2026-01-09 18:20:56,002 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 13:21:26] 2026-01-09 18:20:56,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:21:26] 2026-01-09 18:20:56,003 | INFO     | aborting loop
[2026-01-09 13:21:26] 2026-01-09 18:20:56,003 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 13:21:26] 2026-01-09 18:20:56,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 13:21:26] 2026-01-09 18:20:56,428 | INFO     | all data control threads have been joined
[2026-01-09 13:21:26] 2026-01-09 18:20:56,428 | INFO     | all job control threads have been joined
[2026-01-09 13:21:26] 2026-01-09 18:20:57,008 | INFO     | [job] retrieve thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:57,008 | INFO     | [job] job monitor thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:57,009 | INFO     | [job] queue monitor thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:57,023 | INFO     | all payload control threads have been joined
[2026-01-09 13:21:26] 2026-01-09 18:20:57,098 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:57,126 | INFO     | [job] validate thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:57,129 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:57,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 13:21:26] 2026-01-09 18:20:57,434 | INFO     | [data] control thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:57,437 | INFO     | [job] control thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:58,017 | INFO     | [data] copytool_out thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:58,029 | INFO     | [payload] control thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:58,060 | INFO     | [payload] failed_post thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:58,076 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:58,446 | INFO     | [data] copytool_in thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:58,446 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:20:58,583 | INFO     | [payload] validate_post thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:21:01,137 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 13:21:26] 2026-01-09 18:21:15,318 | INFO     | [monitor] cgroup control has ended
[2026-01-09 13:21:26] 2026-01-09 18:21:15,812 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139629646653248)>', '<ExcThread(monitor, started 139629294503680)>']
[2026-01-09 13:21:26] 2026-01-09 18:21:20,838 | INFO     | all workflow threads have been joined
[2026-01-09 13:21:26] 2026-01-09 18:21:20,838 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 13:21:26] 2026-01-09 18:21:20,838 | INFO     | traces error code: 0
[2026-01-09 13:21:26] 2026-01-09 18:21:20,838 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 13:21:26] 2026-01-09 18:21:24,253 | INFO     | PID=3631961 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 13:21:26] 2026-01-09 18:21:24,254 | INFO     | .. there are 89 such processes running
[2026-01-09 13:21:26] 2026-01-09 18:21:24,254 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 13:21:26] 2026-01-09 18:21:24,255 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 13:21:26] 2026-01-09 18:21:24,255 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 13:21:26] 2026-01-09 18:21:24,255 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 13:21:26] 2026-01-09 18:21:24,255 | INFO     | [monitor] control thread has ended
[2026-01-09 13:21:26] 2026-01-09 18:21:24,898 [wrapper] ==== pilot stdout END ====
[2026-01-09 13:21:26] 2026-01-09 18:21:24,910 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 13:21:26] 2026-01-09 18:21:24,925 [wrapper] pilotpid: 3631961
[2026-01-09 13:21:26] 2026-01-09 18:21:24,934 [wrapper] Pilot exit status: 0
[2026-01-09 13:21:26] 2026-01-09 18:21:25,018 [wrapper] pandaids: 6963147709
[2026-01-09 13:21:26] 2026-01-09 18:21:25,492 [wrapper] cleanup supervisor_pilot 3782661 3631962
[2026-01-09 13:21:26] 2026-01-09 18:21:25,511 [wrapper] Test setup, not cleaning
[2026-01-09 13:21:26] 2026-01-09 18:21:25,556 [wrapper] apfmon messages muted
[2026-01-09 13:21:26] 2026-01-09 18:21:25,578 [wrapper] ==== wrapper stdout END ====
[2026-01-09 13:21:26] 2026-01-09 18:21:25,620 [wrapper] ==== wrapper stderr END ====
[2026-01-09 13:21:26]  *** Error codes and diagnostics ***
[2026-01-09 13:21:26]     "exeErrorCode": 0,
[2026-01-09 13:21:26]     "exeErrorDiag": "",
[2026-01-09 13:21:26]     "pilotErrorCode": 0,
[2026-01-09 13:21:26]     "pilotErrorDiag": "",
[2026-01-09 13:21:26]  *** Listing of results directory ***
[2026-01-09 13:21:26] total 439624
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 13:21:26] -rwx------. 1 boincer umatlas     36322 Jan  8 11:06 runpilot2-wrapper.sh
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:09 queuedata.json
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas       100 Jan  9 06:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 13:21:26] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 06:39 run_atlas
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas       105 Jan  9 06:39 job.xml
[2026-01-09 13:21:26] -rw-r--r--. 2 boincer umatlas 222465004 Jan  9 06:39 EVNT.47898824._000825.pool.root.1
[2026-01-09 13:21:26] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 06:39 start_atlas.sh
[2026-01-09 13:21:26] drwxrwx--x. 2 boincer umatlas        68 Jan  9 06:39 shared
[2026-01-09 13:21:26] -rw-r--r--. 2 boincer umatlas    592401 Jan  9 06:39 input.tar.gz
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas         0 Jan  9 06:39 boinc_lockfile
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 06:39 pandaJob.out
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas    989377 Jan  9 06:40 agis_schedconf.cvmfs.json
[2026-01-09 13:21:26] drwx------. 5 boincer umatlas      4096 Jan  9 06:40 pilot3
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas 217397814 Jan  9 13:18 HITS.47898826._027827.pool.root.1
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas       531 Jan  9 13:19 boinc_task_state.xml
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas      1042 Jan  9 13:20 memory_monitor_summary.json
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas   1516240 Jan  9 13:20 agis_ddmendpoints.agis.ALL.json
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas    544743 Jan  9 13:20 log.47898826._027827.job.log.tgz.1
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas      6798 Jan  9 13:20 init_data.xml
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas        95 Jan  9 13:20 pilot_heartbeat.json
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas      7820 Jan  9 13:20 heartbeat.json
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas       823 Jan  9 13:21 pilotlog.txt
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas        28 Jan  9 13:21 wrapper_checkpoint.txt
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas   2662712 Jan  9 13:21 log.47898826._027827.job.log.1
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 13:21 boinc_mmap_file
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas       357 Jan  9 13:21 output.list
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas       620 Jan  9 13:21 runtime_log
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas   3225600 Jan  9 13:21 result.tar.gz
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas       657 Jan  9 13:21 UHmLDmyh7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm8ofKDmz3hVjm.diag
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas      8813 Jan  9 13:21 runtime_log.err
[2026-01-09 13:21:26] -rw-r--r--. 1 boincer umatlas     16479 Jan  9 13:21 stderr.txt
[2026-01-09 13:21:26] HITS file was successfully produced:
[2026-01-09 13:21:26] -rw-------. 1 boincer umatlas 217397814 Jan  9 13:18 shared/HITS.pool.root.1
[2026-01-09 13:21:46]  *** Contents of shared directory: ***
[2026-01-09 13:21:46] total 433308
[2026-01-09 13:21:46] -rw-r--r--. 2 boincer umatlas 222465004 Jan  9 06:39 ATLAS.root_0
[2026-01-09 13:21:46] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 06:39 start_atlas.sh
[2026-01-09 13:21:46] -rw-r--r--. 2 boincer umatlas    592401 Jan  9 06:39 input.tar.gz
[2026-01-09 13:21:46] -rw-------. 1 boincer umatlas 217397814 Jan  9 13:18 HITS.pool.root.1
[2026-01-09 13:21:46] -rw-------. 1 boincer umatlas   3225600 Jan  9 13:21 result.tar.gz
13:21:47 (3604081): run_atlas exited; CPU time 62540.958258
13:21:47 (3604081): called boinc_finish(0)

</stderr_txt>
]]>

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