Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:56 (61688): wrapper (7.7.26015): starting
00:01:56 (61688): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 00:01:56] Arguments: --nthreads 8
[2026-01-09 00:01:56] Threads: 8
[2026-01-09 00:01:56] Checking for CVMFS
[2026-01-09 00:01:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:01:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:01:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:02:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:02:00] 2.13.3.0 7410 92918 620004 154931 3 301 18529098 25181184 25336 16776704 0 464631607 99.558 516350540 28163 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 00:02:00] CVMFS is ok
[2026-01-09 00:02:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:02:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:02:00] Further information can be found at the LHC@home message board.
[2026-01-09 00:02:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:02:00] Checking for apptainer binary...
[2026-01-09 00:02:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:02:00] Running /usr/bin/apptainer --version
[2026-01-09 00:02:00] apptainer version 1.4.5-2.el9
[2026-01-09 00:02:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:02:01] c-16-37.aglt2.org
[2026-01-09 00:02:01] apptainer works
[2026-01-09 00:02:01] Set ATHENA_PROC_NUMBER=8
[2026-01-09 00:02:01] Set ATHENA_CORE_NUMBER=8
[2026-01-09 00:02:02] Starting ATLAS job with PandaID=6963152871
[2026-01-09 00:02:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:17:53]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:17:53] 2026-01-10 02:17:18,138 | INFO     | intersect: -3409833469.190992
[2026-01-09 21:17:53] 2026-01-10 02:17:18,140 | INFO     | chi2: 4.822133983984955
[2026-01-09 21:17:53] 2026-01-10 02:17:18,141 | INFO     | sum of square deviations: 595491288993.2742
[2026-01-09 21:17:53] 2026-01-10 02:17:18,260 | INFO     | sum of deviations: 1155680189113.9297
[2026-01-09 21:17:53] 2026-01-10 02:17:18,260 | INFO     | mean x: 1767973160.5663717
[2026-01-09 21:17:53] 2026-01-10 02:17:18,260 | INFO     | mean y: 2497116.806918745
[2026-01-09 21:17:53] 2026-01-10 02:17:18,260 | INFO     | intersect: -3428638811.3204427
[2026-01-09 21:17:53] 2026-01-10 02:17:18,268 | INFO     | chi2: 4.822194973595228
[2026-01-09 21:17:53] 2026-01-10 02:17:18,268 | INFO     | current chi2=4.822194973595228 (change=-0.0012647846467101073 %)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,269 | INFO     | right removable region: 1242
[2026-01-09 21:17:53] 2026-01-10 02:17:18,270 | INFO     | sum of square deviations: 595490935437.4065
[2026-01-09 21:17:53] 2026-01-10 02:17:18,332 | INFO     | sum of deviations: 762298169078.7999
[2026-01-09 21:17:53] 2026-01-10 02:17:18,333 | INFO     | mean x: 1767973465.5655673
[2026-01-09 21:17:53] 2026-01-10 02:17:18,333 | INFO     | mean y: 2505749.364440869
[2026-01-09 21:17:53] 2026-01-10 02:17:18,333 | INFO     | intersect: -2260707434.2091904
[2026-01-09 21:17:53] 2026-01-10 02:17:18,334 | INFO     | chi2: 1.1504221451383654
[2026-01-09 21:17:53] 2026-01-10 02:17:18,335 | INFO     | current chi2=1.1504221451383654 (change=76.14288302732581 %)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,336 | INFO     | sum of square deviations: 588333257869.4353
[2026-01-09 21:17:53] 2026-01-10 02:17:18,379 | INFO     | sum of deviations: 564666001507.1178
[2026-01-09 21:17:53] 2026-01-10 02:17:18,380 | INFO     | mean x: 1767973618.0670435
[2026-01-09 21:17:53] 2026-01-10 02:17:18,380 | INFO     | mean y: 2509957.034733441
[2026-01-09 21:17:53] 2026-01-10 02:17:18,380 | INFO     | intersect: -1694342261.2118485
[2026-01-09 21:17:53] 2026-01-10 02:17:18,383 | INFO     | chi2: 0.20866781651134633
[2026-01-09 21:17:53] 2026-01-10 02:17:18,384 | INFO     | current chi2=0.20866781651134633 (change=81.86163075935494 %)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,385 | INFO     | sum of square deviations: 581233163142.4581
[2026-01-09 21:17:53] 2026-01-10 02:17:18,425 | INFO     | sum of deviations: 479768424967.29663
[2026-01-09 21:17:53] 2026-01-10 02:17:18,425 | INFO     | mean x: 1767973770.568532
[2026-01-09 21:17:53] 2026-01-10 02:17:18,425 | INFO     | mean y: 2511779.5231143553
[2026-01-09 21:17:53] 2026-01-10 02:17:18,425 | INFO     | intersect: -1456830262.6673827
[2026-01-09 21:17:53] 2026-01-10 02:17:18,427 | INFO     | chi2: 0.05574436553085969
[2026-01-09 21:17:53] 2026-01-10 02:17:18,427 | INFO     | current chi2=0.05574436553085969 (change=73.28559503672739 %)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,429 | INFO     | sum of square deviations: 574190718444.5237
[2026-01-09 21:17:53] 2026-01-10 02:17:18,468 | INFO     | sum of deviations: 435115820337.54364
[2026-01-09 21:17:53] 2026-01-10 02:17:18,468 | INFO     | mean x: 1767973923.0667753
[2026-01-09 21:17:53] 2026-01-10 02:17:18,468 | INFO     | mean y: 2512745.42019544
[2026-01-09 21:17:53] 2026-01-10 02:17:18,469 | INFO     | intersect: -1337239708.180132
[2026-01-09 21:17:53] 2026-01-10 02:17:18,470 | INFO     | chi2: 0.008280642036415983
[2026-01-09 21:17:53] 2026-01-10 02:17:18,471 | INFO     | current chi2=0.008280642036415983 (change=85.14532911522353 %)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,473 | INFO     | sum of square deviations: 567205091956.0487
[2026-01-09 21:17:53] 2026-01-10 02:17:18,511 | INFO     | sum of deviations: 424819426780.3715
[2026-01-09 21:17:53] 2026-01-10 02:17:18,511 | INFO     | mean x: 1767974075.5682747
[2026-01-09 21:17:53] 2026-01-10 02:17:18,512 | INFO     | mean y: 2512970.1332788225
[2026-01-09 21:17:53] 2026-01-10 02:17:18,512 | INFO     | intersect: -1321646040.4202974
[2026-01-09 21:17:53] 2026-01-10 02:17:18,514 | INFO     | chi2: 0.0076527592493519135
[2026-01-09 21:17:53] 2026-01-10 02:17:18,514 | INFO     | current chi2=0.0076527592493519135 (change=7.582537492899869 %)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,514 | INFO     | left removable region: 50
[2026-01-09 21:17:53] 2026-01-10 02:17:18,516 | INFO     | sum of square deviations: 525158036776.27454
[2026-01-09 21:17:53] 2026-01-10 02:17:18,555 | INFO     | sum of deviations: 390516615539.3256
[2026-01-09 21:17:53] 2026-01-10 02:17:18,556 | INFO     | mean x: 1767974655.047819
[2026-01-09 21:17:53] 2026-01-10 02:17:18,556 | INFO     | mean y: 2513489.432885906
[2026-01-09 21:17:53] 2026-01-10 02:17:18,556 | INFO     | intersect: -1312183097.6874442
[2026-01-09 21:17:53] 2026-01-10 02:17:18,558 | INFO     | chi2: 0.007375872665593482
[2026-01-09 21:17:53] 2026-01-10 02:17:18,558 | INFO     | current memory leak: 0.74 B/s (using 1192 data points, chi2=0.01)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,560 | INFO     | could have reported an average CPU frequency of 2795 MHz (44 samples)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,560 | INFO     | ..............................
[2026-01-09 21:17:53] 2026-01-10 02:17:18,560 | INFO     | . Timing measurements:
[2026-01-09 21:17:53] 2026-01-10 02:17:18,560 | INFO     | . get job = 1 s
[2026-01-09 21:17:53] 2026-01-10 02:17:18,560 | INFO     | . initial setup = 10 s
[2026-01-09 21:17:53] 2026-01-10 02:17:18,561 | INFO     | . payload setup = 69 s
[2026-01-09 21:17:53] 2026-01-10 02:17:18,561 | INFO     | . stage-in = 1 s
[2026-01-09 21:17:53] 2026-01-10 02:17:18,561 | INFO     | . payload execution = 76176 s
[2026-01-09 21:17:53] 2026-01-10 02:17:18,561 | INFO     | . stage-out = 3 s
[2026-01-09 21:17:53] 2026-01-10 02:17:18,561 | INFO     | . log creation = 0 s
[2026-01-09 21:17:53] 2026-01-10 02:17:18,561 | INFO     | ..............................
[2026-01-09 21:17:53] 2026-01-10 02:17:18,761 | INFO     | 
[2026-01-09 21:17:53] 2026-01-10 02:17:18,762 | INFO     | job summary report
[2026-01-09 21:17:53] 2026-01-10 02:17:18,762 | INFO     | --------------------------------------------------
[2026-01-09 21:17:53] 2026-01-10 02:17:18,762 | INFO     | PanDA job id: 6963152871
[2026-01-09 21:17:53] 2026-01-10 02:17:18,762 | INFO     | task id: 47898826
[2026-01-09 21:17:53] 2026-01-10 02:17:18,762 | INFO     | errors: (none)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,762 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 21:17:53] 2026-01-10 02:17:18,762 | INFO     | pilot state: finished 
[2026-01-09 21:17:53] 2026-01-10 02:17:18,762 | INFO     | transexitcode: 0
[2026-01-09 21:17:53] 2026-01-10 02:17:18,763 | INFO     | exeerrorcode: 0
[2026-01-09 21:17:53] 2026-01-10 02:17:18,763 | INFO     | exeerrordiag: 
[2026-01-09 21:17:53] 2026-01-10 02:17:18,763 | INFO     | exitcode: 0
[2026-01-09 21:17:53] 2026-01-10 02:17:18,763 | INFO     | exitmsg: OK
[2026-01-09 21:17:53] 2026-01-10 02:17:18,763 | INFO     | cpuconsumptiontime: 72988 s
[2026-01-09 21:17:53] 2026-01-10 02:17:18,763 | INFO     | nevents: 400
[2026-01-09 21:17:53] 2026-01-10 02:17:18,763 | INFO     | neventsw: 0
[2026-01-09 21:17:53] 2026-01-10 02:17:18,763 | INFO     | pid: 126907
[2026-01-09 21:17:53] 2026-01-10 02:17:18,763 | INFO     | pgrp: 126907
[2026-01-09 21:17:53] 2026-01-10 02:17:18,763 | INFO     | corecount: 8
[2026-01-09 21:17:53] 2026-01-10 02:17:18,763 | INFO     | event service: False
[2026-01-09 21:17:53] 2026-01-10 02:17:18,764 | INFO     | sizes: {0: 2283136, 2: 2283737, 3: 2283821, 6: 2283849, 7: 2284076, 8: 2284076, 19: 2284232, 31: 2284260, 42: 2284288, 54: 2284344, 58: 2284634, 65: 2284942, 76250
[2026-01-09 21:17:53] 2026-01-10 02:17:18,764 | INFO     | --------------------------------------------------
[2026-01-09 21:17:53] 2026-01-10 02:17:18,764 | INFO     | 
[2026-01-09 21:17:53] 2026-01-10 02:17:18,764 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-09 21:17:53] 2026-01-10 02:17:18,792 | INFO     | time since job start (76396s) is within the limit (349056.0s)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,859 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,859 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,859 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,863 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,864 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,864 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,864 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,864 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,864 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,864 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,864 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,864 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,865 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,865 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,865 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,865 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,865 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,865 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,865 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,865 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:17:53] 2026-01-10 02:17:18,870 | INFO     | job 6963152871 has completed (purged errors)
[2026-01-09 21:17:53] 2026-01-10 02:17:18,870 | INFO     | overall cleanup function is called
[2026-01-09 21:17:53] 2026-01-10 02:17:19,879 | INFO     | --- collectZombieJob: --- 10, [126907]
[2026-01-09 21:17:53] 2026-01-10 02:17:19,902 | INFO     | zombie collector waiting for pid 126907
[2026-01-09 21:17:53] 2026-01-10 02:17:19,902 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:17:53] 2026-01-10 02:17:19,902 | INFO     | collected zombie processes
[2026-01-09 21:17:53] 2026-01-10 02:17:19,902 | INFO     | will attempt to kill all subprocesses of pid=126907
[2026-01-09 21:17:53] 2026-01-10 02:17:20,804 | INFO     | process IDs to be killed: [126907] (in reverse order)
[2026-01-09 21:17:53] 2026-01-10 02:17:21,259 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:17:53] 2026-01-10 02:17:21,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:17:53] 2026-01-10 02:17:21,291 | INFO     | did not find any defunct processes belonging to 126907
[2026-01-09 21:17:53] 2026-01-10 02:17:21,326 | INFO     | did not find any defunct processes belonging to 126907
[2026-01-09 21:17:53] 2026-01-10 02:17:21,326 | INFO     | ready for new job
[2026-01-09 21:17:53] 2026-01-10 02:17:21,326 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:17:53] 2026-01-10 02:17:21,336 | INFO     | ***************************************
[2026-01-09 21:17:53] 2026-01-10 02:17:21,336 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:17:53] 2026-01-10 02:17:21,337 | INFO     | ***************************************
[2026-01-09 21:17:53] 2026-01-10 02:17:21,337 | INFO     | 
[2026-01-09 21:17:53] 2026-01-10 02:17:21,351 | INFO     | architecture information:
[2026-01-09 21:17:53] 2026-01-10 02:17:21,351 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:17:53] 2026-01-10 02:17:21,415 | INFO     | cat /etc/os-release:
[2026-01-09 21:17:53] NAME="CentOS Linux"
[2026-01-09 21:17:53] VERSION="7 (Core)"
[2026-01-09 21:17:53] ID="centos"
[2026-01-09 21:17:53] ID_LIKE="rhel fedora"
[2026-01-09 21:17:53] VERSION_ID="7"
[2026-01-09 21:17:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:17:53] ANSI_COLOR="0;31"
[2026-01-09 21:17:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:17:53] HOME_URL="https://www.centos.org/"
[2026-01-09 21:17:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:17:53] 
[2026-01-09 21:17:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:17:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:17:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:17:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:17:53] 
[2026-01-09 21:17:53] 2026-01-10 02:17:21,415 | INFO     | ***************************************
[2026-01-09 21:17:53] 2026-01-10 02:17:21,921 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-09 21:17:53] 2026-01-10 02:17:22,085 | INFO     | sufficient remaining disk space (64466452480 B)
[2026-01-09 21:17:53] 2026-01-10 02:17:22,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:17:53] 2026-01-10 02:17:22,086 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:17:53] 2026-01-10 02:17:22,086 | INFO     | update_server=False
[2026-01-09 21:17:53] 2026-01-10 02:17:22,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:17:53] 2026-01-10 02:17:22,105 | INFO     | all payload control threads have been joined
[2026-01-09 21:17:53] 2026-01-10 02:17:22,532 | INFO     | all data control threads have been joined
[2026-01-09 21:17:53] 2026-01-10 02:17:22,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:17:53] 2026-01-10 02:17:22,561 | INFO     | aborting loop
[2026-01-09 21:17:53] 2026-01-10 02:17:22,974 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:17:53] 2026-01-10 02:17:23,092 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:23,112 | INFO     | [payload] control thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:23,194 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:23,464 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:23,517 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:23,539 | INFO     | [data] control thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:23,569 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:23,629 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:17:53] 2026-01-10 02:17:23,747 | INFO     | all job control threads have been joined
[2026-01-09 21:17:53] 2026-01-10 02:17:23,764 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:23,780 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:17:53] 2026-01-10 02:17:23,804 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:23,967 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:24,243 | INFO     | [job] validate thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:24,437 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:24,754 | INFO     | [job] control thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:24,787 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:24,982 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:27,639 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:17:53] 2026-01-10 02:17:29,905 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:17:53] 2026-01-10 02:17:30,904 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139823608710976)>', '<ExcThread(monitor, started 139823079724800)>']
[2026-01-09 21:17:53] 2026-01-10 02:17:35,929 | INFO     | all workflow threads have been joined
[2026-01-09 21:17:53] 2026-01-10 02:17:36,057 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:17:53] 2026-01-10 02:17:36,057 | INFO     | traces error code: 0
[2026-01-09 21:17:53] 2026-01-10 02:17:36,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:17:53] 2026-01-10 02:17:52,644 | INFO     | PID=78869 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 21:17:53] 2026-01-10 02:17:52,644 | INFO     | .. there are 40 such processes running
[2026-01-09 21:17:53] 2026-01-10 02:17:52,645 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:17:53] 2026-01-10 02:17:52,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:17:53] 2026-01-10 02:17:52,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:17:53] 2026-01-10 02:17:52,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:17:53] 2026-01-10 02:17:52,645 | INFO     | [monitor] control thread has ended
[2026-01-09 21:17:53] 2026-01-10 02:17:52,819 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:17:53] 2026-01-10 02:17:52,875 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:17:53] 2026-01-10 02:17:52,909 [wrapper] pilotpid: 78869
[2026-01-09 21:17:53] 2026-01-10 02:17:52,947 [wrapper] Pilot exit status: 0
[2026-01-09 21:17:53] 2026-01-10 02:17:53,093 [wrapper] pandaids: 6963152871
[2026-01-09 21:17:53] 2026-01-10 02:17:53,258 [wrapper] cleanup supervisor_pilot 3670524 78870
[2026-01-09 21:17:53] 2026-01-10 02:17:53,293 [wrapper] Test setup, not cleaning
[2026-01-09 21:17:53] 2026-01-10 02:17:53,303 [wrapper] apfmon messages muted
[2026-01-09 21:17:53] 2026-01-10 02:17:53,316 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:17:53] 2026-01-10 02:17:53,334 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:17:53]  *** Error codes and diagnostics ***
[2026-01-09 21:17:53]     "exeErrorCode": 0,
[2026-01-09 21:17:53]     "exeErrorDiag": "",
[2026-01-09 21:17:53]     "pilotErrorCode": 0,
[2026-01-09 21:17:53]     "pilotErrorDiag": "",
[2026-01-09 21:17:53]  *** Listing of results directory ***
[2026-01-09 21:17:53] total 454316
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 21:17:53] -rwx------. 1 boincer umatlas     36322 Jan  8 11:04 runpilot2-wrapper.sh
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:04 queuedata.json
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:17:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:01 run_atlas
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:01 job.xml
[2026-01-09 21:17:53] -rw-r--r--. 2 boincer umatlas 225858644 Jan  9 00:01 EVNT.47898824._001144.pool.root.1
[2026-01-09 21:17:53] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 00:01 input.tar.gz
[2026-01-09 21:17:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:01 start_atlas.sh
[2026-01-09 21:17:53] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:01 shared
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:01 boinc_lockfile
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas      2516 Jan  9 00:02 pandaJob.out
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas        57 Jan  9 00:02 setup.sh.local
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas    989771 Jan  9 00:03 agis_schedconf.cvmfs.json
[2026-01-09 21:17:53] drwx------. 5 boincer umatlas      4096 Jan  9 00:04 pilot3
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas      6612 Jan  9 21:12 init_data.xml
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas 216536596 Jan  9 21:16 HITS.47898826._029573.pool.root.1
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas       531 Jan  9 21:16 boinc_task_state.xml
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas      1043 Jan  9 21:16 memory_monitor_summary.json
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas   1516240 Jan  9 21:16 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas   1148365 Jan  9 21:16 log.47898826._029573.job.log.tgz.1
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas        95 Jan  9 21:16 pilot_heartbeat.json
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas      7827 Jan  9 21:17 heartbeat.json
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 21:17 boinc_mmap_file
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas        28 Jan  9 21:17 wrapper_checkpoint.txt
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas       821 Jan  9 21:17 pilotlog.txt
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas   8306769 Jan  9 21:17 log.47898826._029573.job.log.1
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas       357 Jan  9 21:17 output.list
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas       620 Jan  9 21:17 runtime_log
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas   9472000 Jan  9 21:17 result.tar.gz
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 21:17 runtime_log.err
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas       657 Jan  9 21:17 B5MMDmsf7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmdlfKDmRP54No.diag
[2026-01-09 21:17:53] -rw-r--r--. 1 boincer umatlas     21080 Jan  9 21:17 stderr.txt
[2026-01-09 21:17:53] HITS file was successfully produced:
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas 216536596 Jan  9 21:16 shared/HITS.pool.root.1
[2026-01-09 21:17:53]  *** Contents of shared directory: ***
[2026-01-09 21:17:53] total 441884
[2026-01-09 21:17:53] -rw-r--r--. 2 boincer umatlas 225858644 Jan  9 00:01 ATLAS.root_0
[2026-01-09 21:17:53] -rw-r--r--. 2 boincer umatlas    592396 Jan  9 00:01 input.tar.gz
[2026-01-09 21:17:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:01 start_atlas.sh
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas 216536596 Jan  9 21:16 HITS.pool.root.1
[2026-01-09 21:17:53] -rw-------. 1 boincer umatlas   9472000 Jan  9 21:17 result.tar.gz
21:17:55 (61688): run_atlas exited; CPU time 77224.052527
21:17:55 (61688): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN