Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:10 (12888): wrapper (7.7.26015): starting
00:01:10 (12888): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 00:01:10] Arguments: --nthreads 9
[2026-01-09 00:01:10] Threads: 9
[2026-01-09 00:01:10] Checking for CVMFS
[2026-01-09 00:01:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:01:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:01:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:01:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:01:12] 2.13.3.0 12468 92966 427700 154931 1 514 16811248 32947201 18398 16776704 0 331616601 99.420 498364576 34082 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 00:01:12] CVMFS is ok
[2026-01-09 00:01:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:01:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:01:12] Further information can be found at the LHC@home message board.
[2026-01-09 00:01:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:01:12] Checking for apptainer binary...
[2026-01-09 00:01:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:01:12] Running /usr/bin/apptainer --version
[2026-01-09 00:01:12] apptainer version 1.4.5-2.el9
[2026-01-09 00:01:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:01:13] c6-6-8-1.aglt2.org
[2026-01-09 00:01:13] apptainer works
[2026-01-09 00:01:13] Set ATHENA_PROC_NUMBER=9
[2026-01-09 00:01:13] Set ATHENA_CORE_NUMBER=9
[2026-01-09 00:01:13] Starting ATLAS job with PandaID=6963148285
[2026-01-09 00:01:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 05:49:06]  *** The last 200 lines of the pilot log: ***
[2026-01-09 05:49:06] 2026-01-09 10:48:24,296 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2703.9909791666655
[2026-01-09 05:49:06] 2026-01-09 10:48:24,315 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6963148285/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 05:49:06] 2026-01-09 10:48:24,316 | INFO     | extracted standard info from prmon json
[2026-01-09 05:49:06] 2026-01-09 10:48:24,316 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 05:49:06] 2026-01-09 10:48:24,316 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 05:49:06] 2026-01-09 10:48:24,316 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 05:49:06] 2026-01-09 10:48:24,316 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 05:49:06] 2026-01-09 10:48:24,321 | INFO     | fitting pss+swap vs Time
[2026-01-09 05:49:06] 2026-01-09 10:48:24,322 | INFO     | sum of square deviations: 11973332624.701164
[2026-01-09 05:49:06] 2026-01-09 10:48:24,324 | INFO     | sum of deviations: 112953863721.32861
[2026-01-09 05:49:06] 2026-01-09 10:48:24,324 | INFO     | mean x: 1767945356.8254437
[2026-01-09 05:49:06] 2026-01-09 10:48:24,324 | INFO     | mean y: 2507920.3106508874
[2026-01-09 05:49:06] 2026-01-09 10:48:24,325 | INFO     | intersect: -16675911126.500134
[2026-01-09 05:49:06] 2026-01-09 10:48:24,325 | INFO     | chi2: 4.623245013369856
[2026-01-09 05:49:06] 2026-01-09 10:48:24,326 | INFO     | sum of square deviations: 11449812171.663723
[2026-01-09 05:49:06] 2026-01-09 10:48:24,328 | INFO     | sum of deviations: 154312985370.6879
[2026-01-09 05:49:06] 2026-01-09 10:48:24,329 | INFO     | mean x: 1767945204.3303304
[2026-01-09 05:49:06] 2026-01-09 10:48:24,329 | INFO     | mean y: 2519854.021021021
[2026-01-09 05:49:06] 2026-01-09 10:48:24,329 | INFO     | intersect: -23824674720.15532
[2026-01-09 05:49:06] 2026-01-09 10:48:24,329 | INFO     | chi2: 3.2398187101192426
[2026-01-09 05:49:06] 2026-01-09 10:48:24,329 | INFO     | current chi2=3.2398187101192426 (change=29.923274653407177 %)
[2026-01-09 05:49:06] 2026-01-09 10:48:24,330 | INFO     | sum of square deviations: 10941780381.109755
[2026-01-09 05:49:06] 2026-01-09 10:48:24,333 | INFO     | sum of deviations: 151615835206.5913
[2026-01-09 05:49:06] 2026-01-09 10:48:24,333 | INFO     | mean x: 1767945051.8353658
[2026-01-09 05:49:06] 2026-01-09 10:48:24,333 | INFO     | mean y: 2519044.362804878
[2026-01-09 05:49:06] 2026-01-09 10:48:24,333 | INFO     | intersect: -24495182088.091557
[2026-01-09 05:49:06] 2026-01-09 10:48:24,333 | INFO     | chi2: 3.2399181105025274
[2026-01-09 05:49:06] 2026-01-09 10:48:24,334 | INFO     | current chi2=3.2399181105025274 (change=-0.0030680847349375782 %)
[2026-01-09 05:49:06] 2026-01-09 10:48:24,334 | INFO     | right removable region: 327
[2026-01-09 05:49:06] 2026-01-09 10:48:24,334 | INFO     | sum of square deviations: 11449745071.663725
[2026-01-09 05:49:06] 2026-01-09 10:48:24,337 | INFO     | sum of deviations: 20762585056.879883
[2026-01-09 05:49:06] 2026-01-09 10:48:24,337 | INFO     | mean x: 1767945509.3303304
[2026-01-09 05:49:06] 2026-01-09 10:48:24,337 | INFO     | mean y: 2534698.5465465467
[2026-01-09 05:49:06] 2026-01-09 10:48:24,337 | INFO     | intersect: -3203398602.470261
[2026-01-09 05:49:06] 2026-01-09 10:48:24,338 | INFO     | chi2: 1.7374080561635947
[2026-01-09 05:49:06] 2026-01-09 10:48:24,338 | INFO     | current chi2=1.7374080561635947 (change=62.42016049032174 %)
[2026-01-09 05:49:06] 2026-01-09 10:48:24,338 | INFO     | sum of square deviations: 10941646181.109755
[2026-01-09 05:49:06] 2026-01-09 10:48:24,341 | INFO     | sum of deviations: -6461197978.195114
[2026-01-09 05:49:06] 2026-01-09 10:48:24,341 | INFO     | mean x: 1767945661.8353658
[2026-01-09 05:49:06] 2026-01-09 10:48:24,342 | INFO     | mean y: 2542848.7926829266
[2026-01-09 05:49:06] 2026-01-09 10:48:24,342 | INFO     | intersect: 1046539953.6826994
[2026-01-09 05:49:06] 2026-01-09 10:48:24,342 | INFO     | chi2: 1.504608453605826
[2026-01-09 05:49:06] 2026-01-09 10:48:24,342 | INFO     | current chi2=1.504608453605826 (change=13.399247328910066 %)
[2026-01-09 05:49:06] 2026-01-09 10:48:24,342 | INFO     | left removable region: 20
[2026-01-09 05:49:06] 2026-01-09 10:48:24,343 | INFO     | sum of square deviations: 8971667401.400621
[2026-01-09 05:49:06] 2026-01-09 10:48:24,345 | INFO     | sum of deviations: 16104537049.589584
[2026-01-09 05:49:06] 2026-01-09 10:48:24,346 | INFO     | mean x: 1767945631.3452768
[2026-01-09 05:49:06] 2026-01-09 10:48:24,346 | INFO     | mean y: 2561454.4755700324
[2026-01-09 05:49:06] 2026-01-09 10:48:24,346 | INFO     | intersect: -3170978607.566312
[2026-01-09 05:49:06] 2026-01-09 10:48:24,346 | INFO     | chi2: 0.0024068557912270217
[2026-01-09 05:49:06] 2026-01-09 10:48:24,346 | INFO     | current memory leak: 1.80 B/s (using 307 data points, chi2=0.00)
[2026-01-09 05:49:06] 2026-01-09 10:48:24,347 | INFO     | could have reported an average CPU frequency of 2651 MHz (15 samples)
[2026-01-09 05:49:06] 2026-01-09 10:48:24,347 | INFO     | ..............................
[2026-01-09 05:49:06] 2026-01-09 10:48:24,347 | INFO     | . Timing measurements:
[2026-01-09 05:49:06] 2026-01-09 10:48:24,347 | INFO     | . get job = 0 s
[2026-01-09 05:49:06] 2026-01-09 10:48:24,347 | INFO     | . initial setup = 6 s
[2026-01-09 05:49:06] 2026-01-09 10:48:24,348 | INFO     | . payload setup = 41 s
[2026-01-09 05:49:06] 2026-01-09 10:48:24,348 | INFO     | . stage-in = 0 s
[2026-01-09 05:49:06] 2026-01-09 10:48:24,348 | INFO     | . payload execution = 20644 s
[2026-01-09 05:49:06] 2026-01-09 10:48:24,348 | INFO     | . stage-out = 2 s
[2026-01-09 05:49:06] 2026-01-09 10:48:24,348 | INFO     | . log creation = 0 s
[2026-01-09 05:49:06] 2026-01-09 10:48:24,348 | INFO     | ..............................
[2026-01-09 05:49:06] 2026-01-09 10:48:24,439 | INFO     | 
[2026-01-09 05:49:06] 2026-01-09 10:48:24,439 | INFO     | job summary report
[2026-01-09 05:49:06] 2026-01-09 10:48:24,439 | INFO     | --------------------------------------------------
[2026-01-09 05:49:06] 2026-01-09 10:48:24,439 | INFO     | PanDA job id: 6963148285
[2026-01-09 05:49:06] 2026-01-09 10:48:24,439 | INFO     | task id: 47898826
[2026-01-09 05:49:06] 2026-01-09 10:48:24,439 | INFO     | errors: (none)
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | pilot state: finished 
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | transexitcode: 0
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | exeerrorcode: 0
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | exeerrordiag: 
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | exitcode: 0
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | exitmsg: OK
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | cpuconsumptiontime: 62364 s
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | nevents: 400
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | neventsw: 0
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | pid: 58662
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | pgrp: 58662
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | corecount: 9
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | event service: False
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | sizes: {0: 2283800, 1: 2283828, 2: 2283999, 13: 2284027, 24: 2284083, 29: 2284373, 34: 2284529, 20690: 2317938, 20693: 2326992, 20698: 2327130}
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | --------------------------------------------------
[2026-01-09 05:49:06] 2026-01-09 10:48:24,440 | INFO     | 
[2026-01-09 05:49:06] 2026-01-09 10:48:24,441 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-09 05:49:06] 2026-01-09 10:48:24,482 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,483 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,484 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,484 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,484 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,484 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 05:49:06] 2026-01-09 10:48:24,484 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,484 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 05:49:06] 2026-01-09 10:48:24,484 | INFO     | job 6963148285 has completed (purged errors)
[2026-01-09 05:49:06] 2026-01-09 10:48:24,484 | INFO     | overall cleanup function is called
[2026-01-09 05:49:06] 2026-01-09 10:48:25,496 | INFO     | --- collectZombieJob: --- 10, [58662]
[2026-01-09 05:49:06] 2026-01-09 10:48:25,496 | INFO     | zombie collector waiting for pid 58662
[2026-01-09 05:49:06] 2026-01-09 10:48:25,496 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 05:49:06] 2026-01-09 10:48:25,497 | INFO     | collected zombie processes
[2026-01-09 05:49:06] 2026-01-09 10:48:25,497 | INFO     | will attempt to kill all subprocesses of pid=58662
[2026-01-09 05:49:06] 2026-01-09 10:48:25,931 | INFO     | process IDs to be killed: [58662] (in reverse order)
[2026-01-09 05:49:06] 2026-01-09 10:48:26,062 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 05:49:06] 2026-01-09 10:48:26,063 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 05:49:06] 2026-01-09 10:48:26,076 | INFO     | did not find any defunct processes belonging to 58662
[2026-01-09 05:49:06] 2026-01-09 10:48:26,090 | INFO     | did not find any defunct processes belonging to 58662
[2026-01-09 05:49:06] 2026-01-09 10:48:26,090 | INFO     | ready for new job
[2026-01-09 05:49:06] 2026-01-09 10:48:26,090 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 05:49:06] 2026-01-09 10:48:26,093 | INFO     | ***************************************
[2026-01-09 05:49:06] 2026-01-09 10:48:26,093 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 05:49:06] 2026-01-09 10:48:26,093 | INFO     | ***************************************
[2026-01-09 05:49:06] 2026-01-09 10:48:26,093 | INFO     | 
[2026-01-09 05:49:06] 2026-01-09 10:48:26,098 | INFO     | architecture information:
[2026-01-09 05:49:06] 2026-01-09 10:48:26,099 | INFO     | executing command: cat /etc/os-release
[2026-01-09 05:49:06] 2026-01-09 10:48:26,127 | INFO     | cat /etc/os-release:
[2026-01-09 05:49:06] NAME="CentOS Linux"
[2026-01-09 05:49:06] VERSION="7 (Core)"
[2026-01-09 05:49:06] ID="centos"
[2026-01-09 05:49:06] ID_LIKE="rhel fedora"
[2026-01-09 05:49:06] VERSION_ID="7"
[2026-01-09 05:49:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 05:49:06] ANSI_COLOR="0;31"
[2026-01-09 05:49:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 05:49:06] HOME_URL="https://www.centos.org/"
[2026-01-09 05:49:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 05:49:06] 
[2026-01-09 05:49:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 05:49:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 05:49:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 05:49:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 05:49:06] 
[2026-01-09 05:49:06] 2026-01-09 10:48:26,128 | INFO     | ***************************************
[2026-01-09 05:49:06] 2026-01-09 10:48:26,631 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-09 05:49:06] 2026-01-09 10:48:26,649 | INFO     | sufficient remaining disk space (71909244928 B)
[2026-01-09 05:49:06] 2026-01-09 10:48:26,649 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 05:49:06] 2026-01-09 10:48:26,649 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 05:49:06] 2026-01-09 10:48:26,649 | INFO     | update_server=False
[2026-01-09 05:49:06] 2026-01-09 10:48:26,649 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 05:49:06] 2026-01-09 10:48:26,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 05:49:06] 2026-01-09 10:48:26,860 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 05:49:06] 2026-01-09 10:48:26,860 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 05:49:06] 2026-01-09 10:48:26,861 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:49:06] 2026-01-09 10:48:26,861 | INFO     | will abort loop
[2026-01-09 05:49:06] 2026-01-09 10:48:26,996 | INFO     | all payload control threads have been joined
[2026-01-09 05:49:06] 2026-01-09 10:48:27,251 | INFO     | all job control threads have been joined
[2026-01-09 05:49:06] 2026-01-09 10:48:27,654 | INFO     | [job] retrieve thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:27,705 | INFO     | all data control threads have been joined
[2026-01-09 05:49:06] 2026-01-09 10:48:27,866 | INFO     | [job] job monitor thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:27,867 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:27,868 | INFO     | [payload] failed_post thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:28,001 | INFO     | [payload] control thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:28,194 | INFO     | [payload] validate_post thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:28,257 | INFO     | [job] control thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:28,543 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:28,571 | INFO     | [data] copytool_in thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:28,573 | INFO     | [job] validate thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:28,710 | INFO     | [data] control thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:28,804 | INFO     | [data] copytool_out thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:28,840 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:29,404 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 05:49:06] 2026-01-09 10:48:29,457 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:49:06] 2026-01-09 10:48:30,462 | INFO     | [job] queue monitor thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:33,414 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:37,560 | INFO     | job.realtimelogging is not enabled
[2026-01-09 05:49:06] 2026-01-09 10:48:38,566 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 05:49:06] 2026-01-09 10:48:57,305 | INFO     | PID=23514 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 05:49:06] 2026-01-09 10:48:57,306 | INFO     | .. there are 17 such processes running
[2026-01-09 05:49:06] 2026-01-09 10:48:57,306 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 05:49:06] 2026-01-09 10:48:57,307 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 05:49:06] 2026-01-09 10:48:57,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 05:49:06] 2026-01-09 10:49:00,233 | INFO     | [monitor] cgroup control has ended
[2026-01-09 05:49:06] 2026-01-09 10:49:01,176 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139963156596544)>', '<ExcThread(monitor, started 139962422904576)>']
[2026-01-09 05:49:06] 2026-01-09 10:49:01,330 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 05:49:06] 2026-01-09 10:49:01,330 | INFO     | [monitor] control thread has ended
[2026-01-09 05:49:06] 2026-01-09 10:49:06,202 | INFO     | all workflow threads have been joined
[2026-01-09 05:49:06] 2026-01-09 10:49:06,202 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 05:49:06] 2026-01-09 10:49:06,203 | INFO     | traces error code: 0
[2026-01-09 05:49:06] 2026-01-09 10:49:06,203 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 05:49:06] 2026-01-09 10:49:06,361 [wrapper] ==== pilot stdout END ====
[2026-01-09 05:49:06] 2026-01-09 10:49:06,363 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 05:49:06] 2026-01-09 10:49:06,365 [wrapper] pilotpid: 23514
[2026-01-09 05:49:06] 2026-01-09 10:49:06,367 [wrapper] Pilot exit status: 0
[2026-01-09 05:49:06] 2026-01-09 10:49:06,378 [wrapper] pandaids: 6963148285
[2026-01-09 05:49:06] 2026-01-09 10:49:06,448 [wrapper] cleanup supervisor_pilot 1046841 23515
[2026-01-09 05:49:06] 2026-01-09 10:49:06,450 [wrapper] Test setup, not cleaning
[2026-01-09 05:49:06] 2026-01-09 10:49:06,453 [wrapper] apfmon messages muted
[2026-01-09 05:49:06] 2026-01-09 10:49:06,455 [wrapper] ==== wrapper stdout END ====
[2026-01-09 05:49:06] 2026-01-09 10:49:06,458 [wrapper] ==== wrapper stderr END ====
[2026-01-09 05:49:06]  *** Error codes and diagnostics ***
[2026-01-09 05:49:06]     "exeErrorCode": 0,
[2026-01-09 05:49:06]     "exeErrorDiag": "",
[2026-01-09 05:49:06]     "pilotErrorCode": 0,
[2026-01-09 05:49:06]     "pilotErrorDiag": "",
[2026-01-09 05:49:06]  *** Listing of results directory ***
[2026-01-09 05:49:06] total 448472
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 05:49:06] -rwx------ 1 boincer umatlas     36322 Jan  8 11:05 runpilot2-wrapper.sh
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 11:07 queuedata.json
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas       100 Jan  9 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 05:49:06] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 00:01 run_atlas
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas       105 Jan  9 00:01 job.xml
[2026-01-09 05:49:06] -rw-r--r-- 2 boincer umatlas 224569466 Jan  9 00:01 EVNT.47898824._001103.pool.root.1
[2026-01-09 05:49:06] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 00:01 start_atlas.sh
[2026-01-09 05:49:06] drwxrwx--x 2 boincer umatlas      4096 Jan  9 00:01 shared
[2026-01-09 05:49:06] -rw-r--r-- 2 boincer umatlas    592404 Jan  9 00:01 input.tar.gz
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas         0 Jan  9 00:01 boinc_lockfile
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas      2520 Jan  9 00:01 pandaJob.out
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas        57 Jan  9 00:01 setup.sh.local
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas    989771 Jan  9 00:02 agis_schedconf.cvmfs.json
[2026-01-09 05:49:06] drwx------ 5 boincer umatlas      4096 Jan  9 00:02 pilot3
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas 224485355 Jan  9 05:45 HITS.47898826._027956.pool.root.1
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas       531 Jan  9 05:45 boinc_task_state.xml
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas      6876 Jan  9 05:46 init_data.xml
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas      1041 Jan  9 05:48 memory_monitor_summary.json
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas   1516240 Jan  9 05:48 agis_ddmendpoints.agis.ALL.json
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas    547947 Jan  9 05:48 log.47898826._027956.job.log.tgz.1
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas      7825 Jan  9 05:48 heartbeat.json
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas        95 Jan  9 05:48 pilot_heartbeat.json
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 05:49 boinc_mmap_file
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas        28 Jan  9 05:49 wrapper_checkpoint.txt
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas      5080 Jan  9 05:49 pilotlog.txt
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas   2583685 Jan  9 05:49 log.47898826._027956.job.log.1
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas       357 Jan  9 05:49 output.list
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas       620 Jan  9 05:49 runtime_log
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas   3153920 Jan  9 05:49 result.tar.gz
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas       655 Jan  9 05:49 sdXNDmDh7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm50kKDmTha6Po.diag
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas      9343 Jan  9 05:49 runtime_log.err
[2026-01-09 05:49:06] -rw-r--r-- 1 boincer umatlas     21186 Jan  9 05:49 stderr.txt
[2026-01-09 05:49:06] HITS file was successfully produced:
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas 224485355 Jan  9 05:45 shared/HITS.pool.root.1
[2026-01-09 05:49:06]  *** Contents of shared directory: ***
[2026-01-09 05:49:06] total 442216
[2026-01-09 05:49:06] -rw-r--r-- 2 boincer umatlas 224569466 Jan  9 00:01 ATLAS.root_0
[2026-01-09 05:49:06] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 00:01 start_atlas.sh
[2026-01-09 05:49:06] -rw-r--r-- 2 boincer umatlas    592404 Jan  9 00:01 input.tar.gz
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas 224485355 Jan  9 05:45 HITS.pool.root.1
[2026-01-09 05:49:06] -rw------- 1 boincer umatlas   3153920 Jan  9 05:49 result.tar.gz
05:49:08 (12888): run_atlas exited; CPU time 63319.464299
05:49:08 (12888): called boinc_finish(0)

</stderr_txt>
]]>

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