Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:30 (3637044): wrapper (7.7.26015): starting
00:03:30 (3637044): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 00:03:30] Arguments: --nthreads 12
[2026-01-09 00:03:30] Threads: 12
[2026-01-09 00:03:30] Checking for CVMFS
[2026-01-09 00:03:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:03:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:03:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:03:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:03:31] 2.13.3.0 6683 13544 157864 154931 2 181 31567282 40960001 19628 16776704 0 17990933 99.723 16151116 40032 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 00:03:31] CVMFS is ok
[2026-01-09 00:03:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:03:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:03:31] Further information can be found at the LHC@home message board.
[2026-01-09 00:03:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:03:31] Checking for apptainer binary...
[2026-01-09 00:03:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:03:31] Running /usr/bin/apptainer --version
[2026-01-09 00:03:31] apptainer version 1.4.5-2.el9
[2026-01-09 00:03:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:03:32] c-211-35-3.aglt2.org
[2026-01-09 00:03:32] apptainer works
[2026-01-09 00:03:32] Set ATHENA_PROC_NUMBER=12
[2026-01-09 00:03:32] Set ATHENA_CORE_NUMBER=12
[2026-01-09 00:03:32] Starting ATLAS job with PandaID=6963147734
[2026-01-09 00:03:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 10:22:14]  *** The last 200 lines of the pilot log: ***
[2026-01-09 10:22:14] 2026-01-09 15:21:17,330 | INFO     | time since job start (36977s) is within the limit (349056.0s)
[2026-01-09 10:22:14] 2026-01-09 15:21:18,670 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 10:22:14] 2026-01-09 15:21:18,684 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2669.8089166666655
[2026-01-09 10:22:14] 2026-01-09 15:21:18,703 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6963147734/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 10:22:14] 2026-01-09 15:21:18,704 | INFO     | extracted standard info from prmon json
[2026-01-09 10:22:14] 2026-01-09 15:21:18,704 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 10:22:14] 2026-01-09 15:21:18,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 10:22:14] 2026-01-09 15:21:18,705 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 10:22:14] 2026-01-09 15:21:18,705 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 10:22:14] 2026-01-09 15:21:18,716 | INFO     | fitting pss+swap vs Time
[2026-01-09 10:22:14] 2026-01-09 15:21:18,717 | INFO     | sum of square deviations: 67984926003.167465
[2026-01-09 10:22:14] 2026-01-09 15:21:18,725 | INFO     | sum of deviations: 392948190763.45056
[2026-01-09 10:22:14] 2026-01-09 15:21:18,726 | INFO     | mean x: 1767953624.3499172
[2026-01-09 10:22:14] 2026-01-09 15:21:18,726 | INFO     | mean y: 2638652.0215588724
[2026-01-09 10:22:14] 2026-01-09 15:21:18,726 | INFO     | intersect: -10216011553.019745
[2026-01-09 10:22:14] 2026-01-09 15:21:18,727 | INFO     | chi2: 7.348568616412063
[2026-01-09 10:22:14] 2026-01-09 15:21:18,728 | INFO     | sum of square deviations: 66307740305.05037
[2026-01-09 10:22:14] 2026-01-09 15:21:18,735 | INFO     | sum of deviations: 515057372490.6452
[2026-01-09 10:22:14] 2026-01-09 15:21:18,736 | INFO     | mean x: 1767953471.8528428
[2026-01-09 10:22:14] 2026-01-09 15:21:18,736 | INFO     | mean y: 2649716.4732441474
[2026-01-09 10:22:14] 2026-01-09 15:21:18,736 | INFO     | intersect: -13730248821.601093
[2026-01-09 10:22:14] 2026-01-09 15:21:18,737 | INFO     | chi2: 5.163617998935392
[2026-01-09 10:22:14] 2026-01-09 15:21:18,737 | INFO     | current chi2=5.163617998935392 (change=29.733009672072342 %)
[2026-01-09 10:22:14] 2026-01-09 15:21:18,738 | INFO     | sum of square deviations: 64658369081.92259
[2026-01-09 10:22:14] 2026-01-09 15:21:18,749 | INFO     | sum of deviations: 509099802660.011
[2026-01-09 10:22:14] 2026-01-09 15:21:18,749 | INFO     | mean x: 1767953319.3558178
[2026-01-09 10:22:14] 2026-01-09 15:21:18,749 | INFO     | mean y: 2649165.6492411466
[2026-01-09 10:22:14] 2026-01-09 15:21:18,749 | INFO     | intersect: -13917663065.79245
[2026-01-09 10:22:14] 2026-01-09 15:21:18,750 | INFO     | chi2: 5.163579606858125
[2026-01-09 10:22:14] 2026-01-09 15:21:18,750 | INFO     | current chi2=5.163579606858125 (change=0.0007435111829448116 %)
[2026-01-09 10:22:14] 2026-01-09 15:21:18,750 | INFO     | right removable region: 592
[2026-01-09 10:22:14] 2026-01-09 15:21:18,751 | INFO     | sum of square deviations: 66307648133.754585
[2026-01-09 10:22:14] 2026-01-09 15:21:18,794 | INFO     | sum of deviations: 193582425098.09036
[2026-01-09 10:22:14] 2026-01-09 15:21:18,813 | INFO     | mean x: 1767953776.8511705
[2026-01-09 10:22:14] 2026-01-09 15:21:18,813 | INFO     | mean y: 2656766.585284281
[2026-01-09 10:22:14] 2026-01-09 15:21:18,813 | INFO     | intersect: -5158810865.230095
[2026-01-09 10:22:14] 2026-01-09 15:21:18,814 | INFO     | chi2: 3.8379116465441614
[2026-01-09 10:22:14] 2026-01-09 15:21:18,814 | INFO     | current chi2=3.8379116465441614 (change=47.77334407720314 %)
[2026-01-09 10:22:14] 2026-01-09 15:21:18,815 | INFO     | sum of square deviations: 64658148505.63227
[2026-01-09 10:22:14] 2026-01-09 15:21:18,863 | INFO     | sum of deviations: 91223589118.34898
[2026-01-09 10:22:14] 2026-01-09 15:21:18,863 | INFO     | mean x: 1767953929.3541315
[2026-01-09 10:22:14] 2026-01-09 15:21:18,863 | INFO     | mean y: 2666221.755480607
[2026-01-09 10:22:14] 2026-01-09 15:21:18,863 | INFO     | intersect: -2491669087.235359
[2026-01-09 10:22:14] 2026-01-09 15:21:18,864 | INFO     | chi2: 2.9382599597560635
[2026-01-09 10:22:14] 2026-01-09 15:21:18,864 | INFO     | current chi2=2.9382599597560635 (change=23.44117764144433 %)
[2026-01-09 10:22:14] 2026-01-09 15:21:18,864 | INFO     | left removable region: 20
[2026-01-09 10:22:14] 2026-01-09 15:21:18,884 | INFO     | sum of square deviations: 58029089219.36358
[2026-01-09 10:22:14] 2026-01-09 15:21:18,932 | INFO     | sum of deviations: 95880541177.59085
[2026-01-09 10:22:14] 2026-01-09 15:21:18,932 | INFO     | mean x: 1767953898.8636363
[2026-01-09 10:22:14] 2026-01-09 15:21:18,932 | INFO     | mean y: 2688533.148601399
[2026-01-09 10:22:14] 2026-01-09 15:21:18,932 | INFO     | intersect: -2918473575.0361505
[2026-01-09 10:22:14] 2026-01-09 15:21:18,933 | INFO     | chi2: 0.15081254958072612
[2026-01-09 10:22:14] 2026-01-09 15:21:18,933 | INFO     | current memory leak: 1.65 B/s (using 572 data points, chi2=0.15)
[2026-01-09 10:22:14] 2026-01-09 15:21:18,934 | INFO     | could have reported an average CPU frequency of 2667 MHz (24 samples)
[2026-01-09 10:22:14] 2026-01-09 15:21:18,934 | INFO     | ..............................
[2026-01-09 10:22:14] 2026-01-09 15:21:18,934 | INFO     | . Timing measurements:
[2026-01-09 10:22:14] 2026-01-09 15:21:18,934 | INFO     | . get job = 0 s
[2026-01-09 10:22:14] 2026-01-09 15:21:18,935 | INFO     | . initial setup = 9 s
[2026-01-09 10:22:14] 2026-01-09 15:21:18,935 | INFO     | . payload setup = 46 s
[2026-01-09 10:22:14] 2026-01-09 15:21:18,935 | INFO     | . stage-in = 1 s
[2026-01-09 10:22:14] 2026-01-09 15:21:18,935 | INFO     | . payload execution = 36810 s
[2026-01-09 10:22:14] 2026-01-09 15:21:18,935 | INFO     | . stage-out = 3 s
[2026-01-09 10:22:14] 2026-01-09 15:21:18,935 | INFO     | . log creation = 0 s
[2026-01-09 10:22:14] 2026-01-09 15:21:18,935 | INFO     | ..............................
[2026-01-09 10:22:14] 2026-01-09 15:21:19,405 | INFO     | time since job start (36979s) is within the limit (349056.0s)
[2026-01-09 10:22:14] 2026-01-09 15:21:19,484 | INFO     | 
[2026-01-09 10:22:14] 2026-01-09 15:21:19,484 | INFO     | job summary report
[2026-01-09 10:22:14] 2026-01-09 15:21:19,484 | INFO     | --------------------------------------------------
[2026-01-09 10:22:14] 2026-01-09 15:21:19,484 | INFO     | PanDA job id: 6963147734
[2026-01-09 10:22:14] 2026-01-09 15:21:19,484 | INFO     | task id: 47898826
[2026-01-09 10:22:14] 2026-01-09 15:21:19,484 | INFO     | errors: (none)
[2026-01-09 10:22:14] 2026-01-09 15:21:19,484 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 10:22:14] 2026-01-09 15:21:19,484 | INFO     | pilot state: finished 
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | transexitcode: 0
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | exeerrorcode: 0
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | exeerrordiag: 
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | exitcode: 0
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | exitmsg: OK
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | cpuconsumptiontime: 62816 s
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | nevents: 400
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | neventsw: 0
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | pid: 3681555
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | pgrp: 3681555
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | corecount: 12
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | event service: False
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | sizes: {0: 2283143, 1: 2283744, 2: 2283828, 3: 2284055, 4: 2284055, 5: 2284083, 16: 2284267, 27: 2284295, 38: 2284323, 40: 2284613, 49: 2284641, 36861: 2325636, 36
[2026-01-09 10:22:14] 2026-01-09 15:21:19,485 | INFO     | --------------------------------------------------
[2026-01-09 10:22:14] 2026-01-09 15:21:19,486 | INFO     | 
[2026-01-09 10:22:14] 2026-01-09 15:21:19,486 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-09 10:22:14] 2026-01-09 15:21:19,595 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,595 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,595 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,595 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,595 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,596 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 10:22:14] 2026-01-09 15:21:19,597 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,597 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 10:22:14] 2026-01-09 15:21:19,597 | INFO     | job 6963147734 has completed (purged errors)
[2026-01-09 10:22:14] 2026-01-09 15:21:19,597 | INFO     | overall cleanup function is called
[2026-01-09 10:22:14] 2026-01-09 15:21:20,610 | INFO     | --- collectZombieJob: --- 10, [3681555]
[2026-01-09 10:22:14] 2026-01-09 15:21:20,611 | INFO     | zombie collector waiting for pid 3681555
[2026-01-09 10:22:14] 2026-01-09 15:21:20,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 10:22:14] 2026-01-09 15:21:20,611 | INFO     | collected zombie processes
[2026-01-09 10:22:14] 2026-01-09 15:21:20,611 | INFO     | will attempt to kill all subprocesses of pid=3681555
[2026-01-09 10:22:14] 2026-01-09 15:21:21,217 | INFO     | process IDs to be killed: [3681555] (in reverse order)
[2026-01-09 10:22:14] 2026-01-09 15:21:21,357 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 10:22:14] 2026-01-09 15:21:21,357 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 10:22:14] 2026-01-09 15:21:21,374 | INFO     | did not find any defunct processes belonging to 3681555
[2026-01-09 10:22:14] 2026-01-09 15:21:21,389 | INFO     | did not find any defunct processes belonging to 3681555
[2026-01-09 10:22:14] 2026-01-09 15:21:21,389 | INFO     | ready for new job
[2026-01-09 10:22:14] 2026-01-09 15:21:21,389 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 10:22:14] 2026-01-09 15:21:21,394 | INFO     | ***************************************
[2026-01-09 10:22:14] 2026-01-09 15:21:21,394 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 10:22:14] 2026-01-09 15:21:21,394 | INFO     | ***************************************
[2026-01-09 10:22:14] 2026-01-09 15:21:21,394 | INFO     | 
[2026-01-09 10:22:14] 2026-01-09 15:21:21,401 | INFO     | architecture information:
[2026-01-09 10:22:14] 2026-01-09 15:21:21,402 | INFO     | executing command: cat /etc/os-release
[2026-01-09 10:22:14] 2026-01-09 15:21:21,485 | INFO     | cat /etc/os-release:
[2026-01-09 10:22:14] NAME="CentOS Linux"
[2026-01-09 10:22:14] VERSION="7 (Core)"
[2026-01-09 10:22:14] ID="centos"
[2026-01-09 10:22:14] ID_LIKE="rhel fedora"
[2026-01-09 10:22:14] VERSION_ID="7"
[2026-01-09 10:22:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 10:22:14] ANSI_COLOR="0;31"
[2026-01-09 10:22:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 10:22:14] HOME_URL="https://www.centos.org/"
[2026-01-09 10:22:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 10:22:14] 
[2026-01-09 10:22:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 10:22:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 10:22:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 10:22:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 10:22:14] 
[2026-01-09 10:22:14] 2026-01-09 15:21:21,487 | INFO     | ***************************************
[2026-01-09 10:22:14] 2026-01-09 15:21:21,994 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-09 10:22:14] 2026-01-09 15:21:22,095 | INFO     | sufficient remaining disk space (126840995840 B)
[2026-01-09 10:22:14] 2026-01-09 15:21:22,096 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 10:22:14] 2026-01-09 15:21:22,096 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 10:22:14] 2026-01-09 15:21:22,099 | INFO     | update_server=False
[2026-01-09 10:22:14] 2026-01-09 15:21:22,100 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 10:22:14] 2026-01-09 15:21:22,530 | INFO     | all data control threads have been joined
[2026-01-09 10:22:14] 2026-01-09 15:21:22,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 10:22:14] 2026-01-09 15:21:22,821 | INFO     | aborting loop
[2026-01-09 10:22:14] 2026-01-09 15:21:23,108 | INFO     | [job] retrieve thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:23,116 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 10:22:14] 2026-01-09 15:21:23,171 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:23,231 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:23,537 | INFO     | [data] control thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:23,607 | INFO     | all payload control threads have been joined
[2026-01-09 10:22:14] 2026-01-09 15:21:23,683 | INFO     | [payload] failed_post thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:23,684 | INFO     | all job control threads have been joined
[2026-01-09 10:22:14] 2026-01-09 15:21:23,703 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:23,828 | INFO     | [job] job monitor thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:23,965 | INFO     | [job] validate thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:24,136 | INFO     | [payload] validate_post thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:24,192 | INFO     | [data] copytool_in thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:24,484 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:24,501 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 10:22:14] 2026-01-09 15:21:24,613 | INFO     | [payload] control thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:24,669 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 10:22:14] 2026-01-09 15:21:24,690 | INFO     | [job] control thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:25,122 | INFO     | [data] copytool_out thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:25,508 | INFO     | [job] queue monitor thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:28,718 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 10:22:14] 2026-01-09 15:21:53,011 | INFO     | PID=3653434 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 10:22:14] 2026-01-09 15:21:53,012 | INFO     | .. there are 17 such processes running
[2026-01-09 10:22:14] 2026-01-09 15:21:53,012 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 10:22:14] 2026-01-09 15:21:53,012 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 10:22:14] 2026-01-09 15:21:53,012 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 10:22:14] 2026-01-09 15:22:07,089 | INFO     | [monitor] cgroup control has ended
[2026-01-09 10:22:14] 2026-01-09 15:22:08,398 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648380041024)>', '<ExcThread(monitor, started 140648023844608)>']
[2026-01-09 10:22:14] 2026-01-09 15:22:09,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 10:22:14] 2026-01-09 15:22:09,117 | INFO     | [monitor] control thread has ended
[2026-01-09 10:22:14] 2026-01-09 15:22:13,424 | INFO     | all workflow threads have been joined
[2026-01-09 10:22:14] 2026-01-09 15:22:13,425 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 10:22:14] 2026-01-09 15:22:13,425 | INFO     | traces error code: 0
[2026-01-09 10:22:14] 2026-01-09 15:22:13,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 10:22:14] 2026-01-09 15:22:13,714 [wrapper] ==== pilot stdout END ====
[2026-01-09 10:22:14] 2026-01-09 15:22:13,723 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 10:22:14] 2026-01-09 15:22:13,733 [wrapper] pilotpid: 3653434
[2026-01-09 10:22:14] 2026-01-09 15:22:13,748 [wrapper] Pilot exit status: 0
[2026-01-09 10:22:14] 2026-01-09 15:22:13,878 [wrapper] pandaids: 6963147734
[2026-01-09 10:22:14] 2026-01-09 15:22:14,111 [wrapper] cleanup supervisor_pilot  922578 3653435
[2026-01-09 10:22:14] 2026-01-09 15:22:14,174 [wrapper] Test setup, not cleaning
[2026-01-09 10:22:14] 2026-01-09 15:22:14,224 [wrapper] apfmon messages muted
[2026-01-09 10:22:14] 2026-01-09 15:22:14,254 [wrapper] ==== wrapper stdout END ====
[2026-01-09 10:22:14] 2026-01-09 15:22:14,291 [wrapper] ==== wrapper stderr END ====
[2026-01-09 10:22:14]  *** Error codes and diagnostics ***
[2026-01-09 10:22:14]     "exeErrorCode": 0,
[2026-01-09 10:22:14]     "exeErrorDiag": "",
[2026-01-09 10:22:14]     "pilotErrorCode": 0,
[2026-01-09 10:22:14]     "pilotErrorDiag": "",
[2026-01-09 10:22:14]  *** Listing of results directory ***
[2026-01-09 10:22:14] total 454472
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 10:22:14] -rwx------. 1 boincer umatlas     36322 Jan  8 11:05 runpilot2-wrapper.sh
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:07 queuedata.json
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 10:22:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:03 run_atlas
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:03 job.xml
[2026-01-09 10:22:14] -rw-r--r--. 2 boincer umatlas 226637749 Jan  9 00:03 EVNT.47898824._001082.pool.root.1
[2026-01-09 10:22:14] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:03 start_atlas.sh
[2026-01-09 10:22:14] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:03 shared
[2026-01-09 10:22:14] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 00:03 input.tar.gz
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:03 boinc_lockfile
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 00:03 pandaJob.out
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas        57 Jan  9 00:03 setup.sh.local
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas    989771 Jan  9 00:04 agis_schedconf.cvmfs.json
[2026-01-09 10:22:14] drwx------. 5 boincer umatlas      4096 Jan  9 00:05 pilot3
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas 224008492 Jan  9 10:17 HITS.47898826._027852.pool.root.1
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas       531 Jan  9 10:17 boinc_task_state.xml
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas      6859 Jan  9 10:19 init_data.xml
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas      1043 Jan  9 10:20 memory_monitor_summary.json
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas   1516240 Jan  9 10:20 agis_ddmendpoints.agis.ALL.json
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas    801883 Jan  9 10:20 log.47898826._027852.job.log.tgz.1
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas        95 Jan  9 10:20 pilot_heartbeat.json
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas      7834 Jan  9 10:21 heartbeat.json
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas        28 Jan  9 10:21 wrapper_checkpoint.txt
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas      4825 Jan  9 10:22 pilotlog.txt
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas   4607709 Jan  9 10:22 log.47898826._027852.job.log.1
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 10:22 boinc_mmap_file
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas       357 Jan  9 10:22 output.list
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas       620 Jan  9 10:22 runtime_log
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas   5427200 Jan  9 10:22 result.tar.gz
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas      9355 Jan  9 10:22 runtime_log.err
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas       660 Jan  9 10:22 MZwMDmDh7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmd0kKDmIxwr8n.diag
[2026-01-09 10:22:14] -rw-r--r--. 1 boincer umatlas     21237 Jan  9 10:22 stderr.txt
[2026-01-09 10:22:14] HITS file was successfully produced:
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas 224008492 Jan  9 10:17 shared/HITS.pool.root.1
[2026-01-09 10:22:14]  *** Contents of shared directory: ***
[2026-01-09 10:22:14] total 445992
[2026-01-09 10:22:14] -rw-r--r--. 2 boincer umatlas 226637749 Jan  9 00:03 ATLAS.root_0
[2026-01-09 10:22:14] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:03 start_atlas.sh
[2026-01-09 10:22:14] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 00:03 input.tar.gz
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas 224008492 Jan  9 10:17 HITS.pool.root.1
[2026-01-09 10:22:14] -rw-------. 1 boincer umatlas   5427200 Jan  9 10:22 result.tar.gz
10:22:15 (3637044): run_atlas exited; CPU time 64216.030139
10:22:15 (3637044): called boinc_finish(0)

</stderr_txt>
]]>

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