Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:16 (450130): wrapper (7.7.26015): starting
00:02:16 (450130): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 00:02:16] Arguments: --nthreads 8
[2026-01-09 00:02:16] Threads: 8
[2026-01-09 00:02:16] Checking for CVMFS
[2026-01-09 00:02:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:02:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:02:18] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:02:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:02:20] 2.13.3.0 9702 92966 335100 154931 1 305 29564004 32935936 21498 16776704 0 432092678 99.692 328419600 32399 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 00:02:20] CVMFS is ok
[2026-01-09 00:02:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:02:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:02:20] Further information can be found at the LHC@home message board.
[2026-01-09 00:02:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:02:20] Checking for apptainer binary...
[2026-01-09 00:02:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:02:20] Running /usr/bin/apptainer --version
[2026-01-09 00:02:20] apptainer version 1.4.5-2.el9
[2026-01-09 00:02:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:02:22] c-4-37.aglt2.org
[2026-01-09 00:02:22] apptainer works
[2026-01-09 00:02:22] Set ATHENA_PROC_NUMBER=8
[2026-01-09 00:02:22] Set ATHENA_CORE_NUMBER=8
[2026-01-09 00:02:22] Starting ATLAS job with PandaID=6963162209
[2026-01-09 00:02:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:27:57 (4045659): wrapper (7.7.26015): starting
02:27:57 (4045659): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 02:27:58] Arguments: --nthreads 12
[2026-01-10 02:27:58] Threads: 12
[2026-01-10 02:27:58] This job has been restarted, cleaning up previous attempt
[2026-01-10 02:27:58] Checking for CVMFS
[2026-01-10 02:27:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:27:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:27:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:28:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:28:00] 2.13.3.0 9702 94552 333196 154972 2 194 30355007 32935936 25981 16776704 0 440236142 99.694 332319793 32361 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-10 02:28:00] CVMFS is ok
[2026-01-10 02:28:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:28:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:28:00] Further information can be found at the LHC@home message board.
[2026-01-10 02:28:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:28:00] Checking for apptainer binary...
[2026-01-10 02:28:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 02:28:00] Running /usr/bin/apptainer --version
[2026-01-10 02:28:01] apptainer version 1.4.5-2.el9
[2026-01-10 02:28:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:28:01] c-4-37.aglt2.org
[2026-01-10 02:28:01] apptainer works
[2026-01-10 02:28:01] Set ATHENA_PROC_NUMBER=12
[2026-01-10 02:28:01] Set ATHENA_CORE_NUMBER=12
[2026-01-10 02:28:02] Starting ATLAS job with PandaID=6963162209
[2026-01-10 02:28:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:38:15]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:38:15] 2026-01-10 17:37:24,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:38:15] 2026-01-10 17:37:25,499 | INFO     | time since job start (36503s) is within the limit (349056.0s)
[2026-01-10 12:38:15] 2026-01-10 17:37:27,198 | INFO     | monitor loop #1989: job 0:6963162209 is in state 'finished'
[2026-01-10 12:38:15] 2026-01-10 17:37:27,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:38:15] 2026-01-10 17:37:27,512 | INFO     | time since job start (36505s) is within the limit (349056.0s)
[2026-01-10 12:38:15] 2026-01-10 17:37:29,519 | INFO     | time since job start (36507s) is within the limit (349056.0s)
[2026-01-10 12:38:15] 2026-01-10 17:37:29,702 | INFO     | monitor loop #1990: job 0:6963162209 is in state 'finished'
[2026-01-10 12:38:15] 2026-01-10 17:37:29,709 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 12:38:15] 2026-01-10 17:37:31,437 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 12:38:15] 2026-01-10 17:37:31,469 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8463249999995
[2026-01-10 12:38:15] 2026-01-10 17:37:31,576 | INFO     | time since job start (36509s) is within the limit (349056.0s)
[2026-01-10 12:38:15] 2026-01-10 17:37:31,586 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963162209/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:38:15] 2026-01-10 17:37:31,587 | INFO     | extracted standard info from prmon json
[2026-01-10 12:38:15] 2026-01-10 17:37:31,587 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:38:15] 2026-01-10 17:37:31,587 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:38:15] 2026-01-10 17:37:31,622 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 12:38:15] 2026-01-10 17:37:31,622 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 12:38:15] 2026-01-10 17:37:31,667 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:38:15] 2026-01-10 17:37:31,668 | INFO     | sum of square deviations: 65648352085.70964
[2026-01-10 12:38:15] 2026-01-10 17:37:31,678 | INFO     | sum of deviations: 36181650522.18458
[2026-01-10 12:38:15] 2026-01-10 17:37:31,678 | INFO     | mean x: 1768048423.149329
[2026-01-10 12:38:15] 2026-01-10 17:37:31,678 | INFO     | mean y: 2721379.211409396
[2026-01-10 12:38:15] 2026-01-10 17:37:31,678 | INFO     | intersect: -971726693.2880943
[2026-01-10 12:38:15] 2026-01-10 17:37:31,679 | INFO     | chi2: 3.14899407688605
[2026-01-10 12:38:15] 2026-01-10 17:37:31,680 | INFO     | sum of square deviations: 64010095213.58354
[2026-01-10 12:38:15] 2026-01-10 17:37:31,690 | INFO     | sum of deviations: 76830963805.26395
[2026-01-10 12:38:15] 2026-01-10 17:37:31,690 | INFO     | mean x: 1768048270.6548223
[2026-01-10 12:38:15] 2026-01-10 17:37:31,690 | INFO     | mean y: 2725136.942470389
[2026-01-10 12:38:15] 2026-01-10 17:37:31,690 | INFO     | intersect: -2119453438.724036
[2026-01-10 12:38:15] 2026-01-10 17:37:31,691 | INFO     | chi2: 2.4518159419899077
[2026-01-10 12:38:15] 2026-01-10 17:37:31,691 | INFO     | current chi2=2.4518159419899077 (change=22.1397093126819 %)
[2026-01-10 12:38:15] 2026-01-10 17:37:31,692 | INFO     | right removable region: 590
[2026-01-10 12:38:15] 2026-01-10 17:37:31,692 | INFO     | sum of square deviations: 64009859143.583595
[2026-01-10 12:38:15] 2026-01-10 17:37:31,702 | INFO     | sum of deviations: -95611859084.54825
[2026-01-10 12:38:15] 2026-01-10 17:37:31,702 | INFO     | mean x: 1768048575.6548223
[2026-01-10 12:38:15] 2026-01-10 17:37:31,702 | INFO     | mean y: 2733614.016920474
[2026-01-10 12:38:15] 2026-01-10 17:37:31,703 | INFO     | intersect: 2643676955.11925
[2026-01-10 12:38:15] 2026-01-10 17:37:31,703 | INFO     | chi2: 1.2263155502634777
[2026-01-10 12:38:15] 2026-01-10 17:37:31,704 | INFO     | current chi2=1.2263155502634777 (change=61.05691149866671 %)
[2026-01-10 12:38:15] 2026-01-10 17:37:31,704 | INFO     | sum of square deviations: 62398855088.92168
[2026-01-10 12:38:15] 2026-01-10 17:37:31,714 | INFO     | sum of deviations: -115923856185.37878
[2026-01-10 12:38:15] 2026-01-10 17:37:31,714 | INFO     | mean x: 1768048728.1604095
[2026-01-10 12:38:15] 2026-01-10 17:37:31,714 | INFO     | mean y: 2735533.0784982936
[2026-01-10 12:38:15] 2026-01-10 17:37:31,714 | INFO     | intersect: 3287395583.3299284
[2026-01-10 12:38:15] 2026-01-10 17:37:31,715 | INFO     | chi2: 1.175980019726245
[2026-01-10 12:38:15] 2026-01-10 17:37:31,715 | INFO     | current chi2=1.175980019726245 (change=4.104614878806508 %)
[2026-01-10 12:38:15] 2026-01-10 17:37:31,716 | INFO     | left removable region: 20
[2026-01-10 12:38:15] 2026-01-10 17:37:31,716 | INFO     | sum of square deviations: 57426153743.831696
[2026-01-10 12:38:15] 2026-01-10 17:37:31,726 | INFO     | sum of deviations: -33042537508.52636
[2026-01-10 12:38:15] 2026-01-10 17:37:31,727 | INFO     | mean x: 1768048850.168421
[2026-01-10 12:38:15] 2026-01-10 17:37:31,727 | INFO     | mean y: 2735339.8596491227
[2026-01-10 12:38:15] 2026-01-10 17:37:31,727 | INFO     | intersect: 1020056136.04604
[2026-01-10 12:38:15] 2026-01-10 17:37:31,728 | INFO     | chi2: 0.386669191076672
[2026-01-10 12:38:15] 2026-01-10 17:37:31,728 | INFO     | current memory leak: -0.58 B/s (using 570 data points, chi2=0.39)
[2026-01-10 12:38:15] 2026-01-10 17:37:31,729 | INFO     | could have reported an average CPU frequency of 2599 MHz (23 samples)
[2026-01-10 12:38:15] 2026-01-10 17:37:31,729 | INFO     | ..............................
[2026-01-10 12:38:15] 2026-01-10 17:37:31,729 | INFO     | . Timing measurements:
[2026-01-10 12:38:15] 2026-01-10 17:37:31,729 | INFO     | . get job = 0 s
[2026-01-10 12:38:15] 2026-01-10 17:37:31,730 | INFO     | . initial setup = 4 s
[2026-01-10 12:38:15] 2026-01-10 17:37:31,730 | INFO     | . payload setup = 37 s
[2026-01-10 12:38:15] 2026-01-10 17:37:31,730 | INFO     | . stage-in = 0 s
[2026-01-10 12:38:15] 2026-01-10 17:37:31,730 | INFO     | . payload execution = 36365 s
[2026-01-10 12:38:15] 2026-01-10 17:37:31,730 | INFO     | . stage-out = 4 s
[2026-01-10 12:38:15] 2026-01-10 17:37:31,730 | INFO     | . log creation = 0 s
[2026-01-10 12:38:15] 2026-01-10 17:37:31,730 | INFO     | ..............................
[2026-01-10 12:38:15] 2026-01-10 17:37:32,244 | INFO     | 
[2026-01-10 12:38:15] 2026-01-10 17:37:32,244 | INFO     | job summary report
[2026-01-10 12:38:15] 2026-01-10 17:37:32,244 | INFO     | --------------------------------------------------
[2026-01-10 12:38:15] 2026-01-10 17:37:32,244 | INFO     | PanDA job id: 6963162209
[2026-01-10 12:38:15] 2026-01-10 17:37:32,244 | INFO     | task id: 47898826
[2026-01-10 12:38:15] 2026-01-10 17:37:32,245 | INFO     | errors: (none)
[2026-01-10 12:38:15] 2026-01-10 17:37:32,245 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:38:15] 2026-01-10 17:37:32,245 | INFO     | pilot state: finished 
[2026-01-10 12:38:15] 2026-01-10 17:37:32,245 | INFO     | transexitcode: 0
[2026-01-10 12:38:15] 2026-01-10 17:37:32,245 | INFO     | exeerrorcode: 0
[2026-01-10 12:38:15] 2026-01-10 17:37:32,245 | INFO     | exeerrordiag: 
[2026-01-10 12:38:15] 2026-01-10 17:37:32,245 | INFO     | exitcode: 0
[2026-01-10 12:38:15] 2026-01-10 17:37:32,245 | INFO     | exitmsg: OK
[2026-01-10 12:38:15] 2026-01-10 17:37:32,245 | INFO     | cpuconsumptiontime: 79263 s
[2026-01-10 12:38:15] 2026-01-10 17:37:32,246 | INFO     | nevents: 400
[2026-01-10 12:38:15] 2026-01-10 17:37:32,246 | INFO     | neventsw: 0
[2026-01-10 12:38:15] 2026-01-10 17:37:32,246 | INFO     | pid: 4062628
[2026-01-10 12:38:15] 2026-01-10 17:37:32,246 | INFO     | pgrp: 4062628
[2026-01-10 12:38:15] 2026-01-10 17:37:32,246 | INFO     | corecount: 12
[2026-01-10 12:38:15] 2026-01-10 17:37:32,246 | INFO     | event service: False
[2026-01-10 12:38:15] 2026-01-10 17:37:32,246 | INFO     | sizes: {0: 2283799, 1: 2283998, 2: 2283998, 13: 2284026, 24: 2284082, 27: 2284372, 35: 2284528, 36406: 2325132, 36407: 2325131, 36412: 2334185, 36416: 2334241, 364
[2026-01-10 12:38:15] 2026-01-10 17:37:32,246 | INFO     | --------------------------------------------------
[2026-01-10 12:38:15] 2026-01-10 17:37:32,246 | INFO     | 
[2026-01-10 12:38:15] 2026-01-10 17:37:32,247 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-10 12:38:15] 2026-01-10 17:37:32,382 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,383 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,383 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,383 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,383 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,383 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,383 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,383 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,383 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,384 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,384 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,384 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,384 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,385 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:38:15] 2026-01-10 17:37:32,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,385 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:38:15] 2026-01-10 17:37:32,385 | INFO     | job 6963162209 has completed (purged errors)
[2026-01-10 12:38:15] 2026-01-10 17:37:32,385 | INFO     | overall cleanup function is called
[2026-01-10 12:38:15] 2026-01-10 17:37:33,407 | INFO     | --- collectZombieJob: --- 10, [4062628]
[2026-01-10 12:38:15] 2026-01-10 17:37:33,407 | INFO     | zombie collector waiting for pid 4062628
[2026-01-10 12:38:15] 2026-01-10 17:37:33,407 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:38:15] 2026-01-10 17:37:33,407 | INFO     | collected zombie processes
[2026-01-10 12:38:15] 2026-01-10 17:37:33,407 | INFO     | will attempt to kill all subprocesses of pid=4062628
[2026-01-10 12:38:15] 2026-01-10 17:37:34,460 | INFO     | process IDs to be killed: [4062628] (in reverse order)
[2026-01-10 12:38:15] 2026-01-10 17:37:34,706 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:38:15] 2026-01-10 17:37:34,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:38:15] 2026-01-10 17:37:34,724 | INFO     | did not find any defunct processes belonging to 4062628
[2026-01-10 12:38:15] 2026-01-10 17:37:34,738 | INFO     | did not find any defunct processes belonging to 4062628
[2026-01-10 12:38:15] 2026-01-10 17:37:34,738 | INFO     | ready for new job
[2026-01-10 12:38:15] 2026-01-10 17:37:34,738 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:38:15] 2026-01-10 17:37:34,742 | INFO     | ***************************************
[2026-01-10 12:38:15] 2026-01-10 17:37:34,743 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:38:15] 2026-01-10 17:37:34,743 | INFO     | ***************************************
[2026-01-10 12:38:15] 2026-01-10 17:37:34,743 | INFO     | 
[2026-01-10 12:38:15] 2026-01-10 17:37:34,745 | INFO     | architecture information:
[2026-01-10 12:38:15] 2026-01-10 17:37:34,746 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:38:15] 2026-01-10 17:37:34,761 | INFO     | cat /etc/os-release:
[2026-01-10 12:38:15] NAME="CentOS Linux"
[2026-01-10 12:38:15] VERSION="7 (Core)"
[2026-01-10 12:38:15] ID="centos"
[2026-01-10 12:38:15] ID_LIKE="rhel fedora"
[2026-01-10 12:38:15] VERSION_ID="7"
[2026-01-10 12:38:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:38:15] ANSI_COLOR="0;31"
[2026-01-10 12:38:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:38:15] HOME_URL="https://www.centos.org/"
[2026-01-10 12:38:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:38:15] 
[2026-01-10 12:38:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:38:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:38:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:38:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:38:15] 
[2026-01-10 12:38:15] 2026-01-10 17:37:34,762 | INFO     | ***************************************
[2026-01-10 12:38:15] 2026-01-10 17:37:35,267 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-10 12:38:15] 2026-01-10 17:37:35,347 | INFO     | sufficient remaining disk space (76079431680 B)
[2026-01-10 12:38:15] 2026-01-10 17:37:35,348 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:38:15] 2026-01-10 17:37:35,348 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:38:15] 2026-01-10 17:37:35,348 | INFO     | update_server=False
[2026-01-10 12:38:15] 2026-01-10 17:37:35,348 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:38:15] 2026-01-10 17:37:35,592 | INFO     | all job control threads have been joined
[2026-01-10 12:38:15] 2026-01-10 17:37:35,660 | INFO     | all payload control threads have been joined
[2026-01-10 12:38:15] 2026-01-10 17:37:35,739 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:38:15] 2026-01-10 17:37:35,739 | INFO     | aborting loop
[2026-01-10 12:38:15] 2026-01-10 17:37:36,069 | INFO     | all data control threads have been joined
[2026-01-10 12:38:15] 2026-01-10 17:37:36,096 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:38:15] 2026-01-10 17:37:36,354 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:36,503 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:36,536 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:36,589 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:38:15] 2026-01-10 17:37:36,607 | INFO     | [job] control thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:36,666 | INFO     | [payload] control thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:36,745 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:36,843 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:36,844 | INFO     | [job] validate thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:36,993 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:38:15] 2026-01-10 17:37:37,075 | INFO     | [data] control thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:37,094 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:37,101 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:37,596 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:37,759 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:38,002 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:38,103 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:37:40,598 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:38:15] 2026-01-10 17:38:05,148 | INFO     | PID=4050377 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:38:15] 2026-01-10 17:38:05,148 | INFO     | .. there are 26 such processes running
[2026-01-10 12:38:15] 2026-01-10 17:38:05,149 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:38:15] 2026-01-10 17:38:05,149 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:38:15] 2026-01-10 17:38:05,150 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:38:15] 2026-01-10 17:38:07,900 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:38:15] 2026-01-10 17:38:09,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139664730269504)>', '<ExcThread(monitor, started 139663914284800)>']
[2026-01-10 12:38:15] 2026-01-10 17:38:10,180 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:38:15] 2026-01-10 17:38:10,180 | INFO     | [monitor] control thread has ended
[2026-01-10 12:38:15] 2026-01-10 17:38:14,522 | INFO     | all workflow threads have been joined
[2026-01-10 12:38:15] 2026-01-10 17:38:14,522 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:38:15] 2026-01-10 17:38:14,522 | INFO     | traces error code: 0
[2026-01-10 12:38:15] 2026-01-10 17:38:14,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:38:15] 2026-01-10 17:38:14,834 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:38:15] 2026-01-10 17:38:14,857 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:38:15] 2026-01-10 17:38:14,877 [wrapper] pilotpid: 4050377
[2026-01-10 12:38:15] 2026-01-10 17:38:14,920 [wrapper] Pilot exit status: 0
[2026-01-10 12:38:15] 2026-01-10 17:38:15,115 [wrapper] pandaids: 6963162209 6963162209
[2026-01-10 12:38:15] 2026-01-10 17:38:15,252 [wrapper] cleanup supervisor_pilot 1577471 4050378
[2026-01-10 12:38:15] 2026-01-10 17:38:15,255 [wrapper] Test setup, not cleaning
[2026-01-10 12:38:15] 2026-01-10 17:38:15,258 [wrapper] apfmon messages muted
[2026-01-10 12:38:15] 2026-01-10 17:38:15,271 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:38:15] 2026-01-10 17:38:15,310 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:38:15]  *** Error codes and diagnostics ***
[2026-01-10 12:38:15]     "exeErrorCode": 0,
[2026-01-10 12:38:15]     "exeErrorDiag": "",
[2026-01-10 12:38:15]     "pilotErrorCode": 0,
[2026-01-10 12:38:15]     "pilotErrorDiag": "",
[2026-01-10 12:38:15]  *** Listing of results directory ***
[2026-01-10 12:38:15] total 675028
[2026-01-10 12:38:15] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-10 12:38:15] -rwx------. 1 boincer umatlas     36322 Jan  8 16:49 runpilot2-wrapper.sh
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 16:51 queuedata.json
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:38:15] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:02 run_atlas
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:02 job.xml
[2026-01-10 12:38:15] -rw-r--r--. 3 boincer umatlas 225000030 Jan  9 00:02 EVNT.47898824._001242.pool.root.1
[2026-01-10 12:38:15] -rw-r--r--. 3 boincer umatlas 225000030 Jan  9 00:02 ATLAS.root_0
[2026-01-10 12:38:15] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:02 start_atlas.sh
[2026-01-10 12:38:15] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:02 shared
[2026-01-10 12:38:15] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 00:02 input.tar.gz
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:02 boinc_lockfile
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas      2519 Jan 10 02:28 pandaJob.out
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas        57 Jan 10 02:28 setup.sh.local
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas    989374 Jan 10 02:28 agis_schedconf.cvmfs.json
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas 227194376 Jan 10 12:35 HITS.47898826._033836.pool.root.1
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas       532 Jan 10 12:35 boinc_task_state.xml
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas      1056 Jan 10 12:36 memory_monitor_summary.json
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas   1516240 Jan 10 12:36 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas    775318 Jan 10 12:36 log.47898826._033836.job.log.tgz.1
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas      7849 Jan 10 12:37 heartbeat.json
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas      6661 Jan 10 12:37 init_data.xml
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas        96 Jan 10 12:38 pilot_heartbeat.json
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 12:38 boinc_mmap_file
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas        29 Jan 10 12:38 wrapper_checkpoint.txt
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas      4824 Jan 10 12:38 pilotlog.txt
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas   4280859 Jan 10 12:38 log.47898826._033836.job.log.1
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas       357 Jan 10 12:38 output.list
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas       620 Jan 10 12:38 runtime_log
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas   5079040 Jan 10 12:38 result.tar.gz
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas       786 Jan 10 12:38 Y7oMDmy3Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnRgKDmh93NOn.diag
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas      9420 Jan 10 12:38 runtime_log.err
[2026-01-10 12:38:15] -rw-r--r--. 1 boincer umatlas     23617 Jan 10 12:38 stderr.txt
[2026-01-10 12:38:15] HITS file was successfully produced:
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas 227194376 Jan 10 12:35 shared/HITS.pool.root.1
[2026-01-10 12:38:15]  *** Contents of shared directory: ***
[2026-01-10 12:38:15] total 447160
[2026-01-10 12:38:15] -rw-r--r--. 3 boincer umatlas 225000030 Jan  9 00:02 ATLAS.root_0
[2026-01-10 12:38:15] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:02 start_atlas.sh
[2026-01-10 12:38:15] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 00:02 input.tar.gz
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas 227194376 Jan 10 12:35 HITS.pool.root.1
[2026-01-10 12:38:15] -rw-------. 1 boincer umatlas   5079040 Jan 10 12:38 result.tar.gz
12:38:16 (4045659): run_atlas exited; CPU time 80678.265553
12:38:16 (4045659): called boinc_finish(0)

</stderr_txt>
]]>

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