Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:42 (3241958): wrapper (7.7.26015): starting
00:04:42 (3241958): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 00:04:42] Arguments: --nthreads 8
[2026-01-09 00:04:42] Threads: 8
[2026-01-09 00:04:42] Checking for CVMFS
[2026-01-09 00:04:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:04:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:04:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:04:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:04:50] 2.13.3.0 7109 92944 417340 154931 1 308 18336321 21042177 24825 16776704 0 381067890 99.463 506646329 31735 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 00:04:50] CVMFS is ok
[2026-01-09 00:04:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:04:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:04:50] Further information can be found at the LHC@home message board.
[2026-01-09 00:04:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:04:50] Checking for apptainer binary...
[2026-01-09 00:04:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:04:50] Running /usr/bin/apptainer --version
[2026-01-09 00:04:50] apptainer version 1.4.5-2.el9
[2026-01-09 00:04:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:04:52] c-16-11.aglt2.org
[2026-01-09 00:04:52] apptainer works
[2026-01-09 00:04:52] Set ATHENA_PROC_NUMBER=8
[2026-01-09 00:04:52] Set ATHENA_CORE_NUMBER=8
[2026-01-09 00:04:53] Starting ATLAS job with PandaID=6963162136
[2026-01-09 00:04:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:12:10 (1046718): wrapper (7.7.26015): starting
19:12:10 (1046718): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 19:12:10] Arguments: --nthreads 12
[2026-01-09 19:12:10] Threads: 12
[2026-01-09 19:12:10] This job has been restarted, cleaning up previous attempt
[2026-01-09 19:12:11] Checking for CVMFS
[2026-01-09 19:12:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:12:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:12:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:12:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:12:13] 2.13.3.0 7109 94091 608916 154961 0 440 15843596 21042177 23859 16776704 0 386884939 99.467 510591097 31703 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 19:12:13] CVMFS is ok
[2026-01-09 19:12:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 19:12:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 19:12:13] Further information can be found at the LHC@home message board.
[2026-01-09 19:12:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:12:13] Checking for apptainer binary...
[2026-01-09 19:12:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:12:13] Running /usr/bin/apptainer --version
[2026-01-09 19:12:13] apptainer version 1.4.5-2.el9
[2026-01-09 19:12:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:12:14] c-16-11.aglt2.org
[2026-01-09 19:12:14] apptainer works
[2026-01-09 19:12:14] Set ATHENA_PROC_NUMBER=12
[2026-01-09 19:12:14] Set ATHENA_CORE_NUMBER=12
[2026-01-09 19:12:15] Starting ATLAS job with PandaID=6963162136
[2026-01-09 19:12:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:01:02]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:01:03] 2026-01-10 12:00:07,567 | INFO     | 42402s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-10 07:01:03] 2026-01-10 12:00:09,627 | INFO     | time since job start (42397s) is within the limit (349056.0s)
[2026-01-10 07:01:03] 2026-01-10 12:00:09,988 | INFO     | monitor loop #2077: job 0:6963162136 is in state 'finished'
[2026-01-10 07:01:03] 2026-01-10 12:00:09,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 07:01:03] 2026-01-10 12:00:11,634 | INFO     | time since job start (42399s) is within the limit (349056.0s)
[2026-01-10 07:01:03] 2026-01-10 12:00:12,071 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-10 07:01:03] 2026-01-10 12:00:12,133 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2900.0371000000005
[2026-01-10 07:01:03] 2026-01-10 12:00:12,161 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963162136/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 07:01:03] 2026-01-10 12:00:12,162 | INFO     | extracted standard info from prmon json
[2026-01-10 07:01:03] 2026-01-10 12:00:12,163 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 07:01:03] 2026-01-10 12:00:12,163 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 07:01:03] 2026-01-10 12:00:12,167 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 07:01:03] 2026-01-10 12:00:12,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 07:01:03] 2026-01-10 12:00:12,219 | INFO     | fitting pss+swap vs Time
[2026-01-10 07:01:03] 2026-01-10 12:00:12,228 | INFO     | sum of square deviations: 102747877958.50864
[2026-01-10 07:01:03] 2026-01-10 12:00:12,273 | INFO     | sum of deviations: -2287842859.1098385
[2026-01-10 07:01:03] 2026-01-10 12:00:12,273 | INFO     | mean x: 1768025242.8959537
[2026-01-10 07:01:03] 2026-01-10 12:00:12,274 | INFO     | mean y: 2716811.567919075
[2026-01-10 07:01:03] 2026-01-10 12:00:12,274 | INFO     | intersect: 42084670.12669993
[2026-01-10 07:01:03] 2026-01-10 12:00:12,275 | INFO     | chi2: 3.2211729678087737
[2026-01-10 07:01:03] 2026-01-10 12:00:12,276 | INFO     | sum of square deviations: 100536701462.7192
[2026-01-10 07:01:03] 2026-01-10 12:00:12,339 | INFO     | sum of deviations: -3784039230.8515534
[2026-01-10 07:01:03] 2026-01-10 12:00:12,339 | INFO     | mean x: 1768025090.3988354
[2026-01-10 07:01:03] 2026-01-10 12:00:12,339 | INFO     | mean y: 2716708.68558952
[2026-01-10 07:01:03] 2026-01-10 12:00:12,340 | INFO     | intersect: 69262320.44588713
[2026-01-10 07:01:03] 2026-01-10 12:00:12,341 | INFO     | chi2: 3.220392363798522
[2026-01-10 07:01:03] 2026-01-10 12:00:12,341 | INFO     | current chi2=3.220392363798522 (change=0.02423353287926134 %)
[2026-01-10 07:01:03] 2026-01-10 12:00:12,341 | INFO     | right removable region: 686
[2026-01-10 07:01:03] 2026-01-10 12:00:12,350 | INFO     | sum of square deviations: 100536534322.71907
[2026-01-10 07:01:03] 2026-01-10 12:00:12,401 | INFO     | sum of deviations: -185433425020.429
[2026-01-10 07:01:03] 2026-01-10 12:00:12,401 | INFO     | mean x: 1768025395.3988354
[2026-01-10 07:01:03] 2026-01-10 12:00:12,401 | INFO     | mean y: 2729419.713245997
[2026-01-10 07:01:03] 2026-01-10 12:00:12,401 | INFO     | intersect: 3263743008.4601283
[2026-01-10 07:01:03] 2026-01-10 12:00:12,402 | INFO     | chi2: 0.7125379194993785
[2026-01-10 07:01:03] 2026-01-10 12:00:12,403 | INFO     | current chi2=0.7125379194993785 (change=77.87955112562341 %)
[2026-01-10 07:01:03] 2026-01-10 12:00:12,416 | INFO     | sum of square deviations: 98357144774.41765
[2026-01-10 07:01:03] 2026-01-10 12:00:12,483 | INFO     | sum of deviations: -216494191153.64484
[2026-01-10 07:01:03] 2026-01-10 12:00:12,483 | INFO     | mean x: 1768025547.9017596
[2026-01-10 07:01:03] 2026-01-10 12:00:12,484 | INFO     | mean y: 2731588.870967742
[2026-01-10 07:01:03] 2026-01-10 12:00:12,484 | INFO     | intersect: 3894337651.7538304
[2026-01-10 07:01:03] 2026-01-10 12:00:12,485 | INFO     | chi2: 0.6194869568636198
[2026-01-10 07:01:03] 2026-01-10 12:00:12,485 | INFO     | current chi2=0.6194869568636198 (change=13.059089220281125 %)
[2026-01-10 07:01:03] 2026-01-10 12:00:12,485 | INFO     | left removable region: 20
[2026-01-10 07:01:03] 2026-01-10 12:00:12,486 | INFO     | sum of square deviations: 91595608973.0571
[2026-01-10 07:01:03] 2026-01-10 12:00:12,525 | INFO     | monitor loop #2078: job 0:6963162136 is in state 'finished'
[2026-01-10 07:01:03] 2026-01-10 12:00:12,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 07:01:03] 2026-01-10 12:00:12,545 | INFO     | sum of deviations: -185932733113.36627
[2026-01-10 07:01:03] 2026-01-10 12:00:12,545 | INFO     | mean x: 1768025669.897898
[2026-01-10 07:01:03] 2026-01-10 12:00:12,546 | INFO     | mean y: 2729376.024024024
[2026-01-10 07:01:03] 2026-01-10 12:00:12,546 | INFO     | intersect: 3591698855.067542
[2026-01-10 07:01:03] 2026-01-10 12:00:12,559 | INFO     | chi2: 0.5602272198138635
[2026-01-10 07:01:03] 2026-01-10 12:00:12,560 | INFO     | current memory leak: -2.03 B/s (using 666 data points, chi2=0.56)
[2026-01-10 07:01:03] 2026-01-10 12:00:12,561 | INFO     | could have reported an average CPU frequency of 2900 MHz (26 samples)
[2026-01-10 07:01:03] 2026-01-10 12:00:12,561 | INFO     | ..............................
[2026-01-10 07:01:03] 2026-01-10 12:00:12,561 | INFO     | . Timing measurements:
[2026-01-10 07:01:03] 2026-01-10 12:00:12,561 | INFO     | . get job = 0 s
[2026-01-10 07:01:03] 2026-01-10 12:00:12,561 | INFO     | . initial setup = 6 s
[2026-01-10 07:01:03] 2026-01-10 12:00:12,561 | INFO     | . payload setup = 41 s
[2026-01-10 07:01:03] 2026-01-10 12:00:12,562 | INFO     | . stage-in = 0 s
[2026-01-10 07:01:03] 2026-01-10 12:00:12,562 | INFO     | . payload execution = 42252 s
[2026-01-10 07:01:03] 2026-01-10 12:00:12,562 | INFO     | . stage-out = 4 s
[2026-01-10 07:01:03] 2026-01-10 12:00:12,562 | INFO     | . log creation = 0 s
[2026-01-10 07:01:03] 2026-01-10 12:00:12,562 | INFO     | ..............................
[2026-01-10 07:01:03] 2026-01-10 12:00:13,737 | INFO     | 
[2026-01-10 07:01:03] 2026-01-10 12:00:13,738 | INFO     | job summary report
[2026-01-10 07:01:03] 2026-01-10 12:00:13,755 | INFO     | --------------------------------------------------
[2026-01-10 07:01:03] 2026-01-10 12:00:13,755 | INFO     | PanDA job id: 6963162136
[2026-01-10 07:01:03] 2026-01-10 12:00:13,755 | INFO     | task id: 47898826
[2026-01-10 07:01:03] 2026-01-10 12:00:13,756 | INFO     | errors: (none)
[2026-01-10 07:01:03] 2026-01-10 12:00:13,756 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 07:01:03] 2026-01-10 12:00:13,756 | INFO     | pilot state: finished 
[2026-01-10 07:01:03] 2026-01-10 12:00:13,756 | INFO     | transexitcode: 0
[2026-01-10 07:01:03] 2026-01-10 12:00:13,756 | INFO     | exeerrorcode: 0
[2026-01-10 07:01:03] 2026-01-10 12:00:13,756 | INFO     | exeerrordiag: 
[2026-01-10 07:01:03] 2026-01-10 12:00:13,757 | INFO     | exitcode: 0
[2026-01-10 07:01:03] 2026-01-10 12:00:13,757 | INFO     | exitmsg: OK
[2026-01-10 07:01:03] 2026-01-10 12:00:13,757 | INFO     | cpuconsumptiontime: 114916 s
[2026-01-10 07:01:03] 2026-01-10 12:00:13,757 | INFO     | nevents: 400
[2026-01-10 07:01:03] 2026-01-10 12:00:13,757 | INFO     | neventsw: 0
[2026-01-10 07:01:03] 2026-01-10 12:00:13,757 | INFO     | pid: 1063750
[2026-01-10 07:01:03] 2026-01-10 12:00:13,757 | INFO     | pgrp: 1063750
[2026-01-10 07:01:03] 2026-01-10 12:00:13,758 | INFO     | corecount: 12
[2026-01-10 07:01:03] 2026-01-10 12:00:13,758 | INFO     | event service: False
[2026-01-10 07:01:03] 2026-01-10 12:00:13,758 | INFO     | sizes: {0: 2283143, 1: 2283828, 2: 2283856, 3: 2284055, 15: 2284055, 26: 2284083, 33: 2284501, 37: 2284557, 42297: 2326957, 42302: 2335955, 42306: 2336011, 42329: 
[2026-01-10 07:01:03] 2026-01-10 12:00:13,758 | INFO     | --------------------------------------------------
[2026-01-10 07:01:03] 2026-01-10 12:00:13,758 | INFO     | 
[2026-01-10 07:01:03] 2026-01-10 12:00:13,758 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 07:01:03] 2026-01-10 12:00:13,943 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,943 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,944 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,944 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,944 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,944 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,944 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,944 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,945 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,945 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,945 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,945 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,945 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,946 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,946 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,946 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,946 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,946 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 07:01:03] 2026-01-10 12:00:13,946 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,947 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 07:01:03] 2026-01-10 12:00:13,955 | INFO     | job 6963162136 has completed (purged errors)
[2026-01-10 07:01:03] 2026-01-10 12:00:13,955 | INFO     | overall cleanup function is called
[2026-01-10 07:01:03] 2026-01-10 12:00:15,003 | INFO     | --- collectZombieJob: --- 10, [1063750]
[2026-01-10 07:01:03] 2026-01-10 12:00:15,003 | INFO     | zombie collector waiting for pid 1063750
[2026-01-10 07:01:03] 2026-01-10 12:00:15,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:01:03] 2026-01-10 12:00:15,004 | INFO     | collected zombie processes
[2026-01-10 07:01:03] 2026-01-10 12:00:15,004 | INFO     | will attempt to kill all subprocesses of pid=1063750
[2026-01-10 07:01:03] 2026-01-10 12:00:16,328 | INFO     | PID=1053069 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 07:01:03] 2026-01-10 12:00:16,329 | INFO     | .. there are 23 such processes running
[2026-01-10 07:01:03] 2026-01-10 12:00:16,809 | INFO     | process IDs to be killed: [1063750] (in reverse order)
[2026-01-10 07:01:03] 2026-01-10 12:00:16,975 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:01:03] 2026-01-10 12:00:16,977 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:01:03] 2026-01-10 12:00:16,998 | INFO     | did not find any defunct processes belonging to 1063750
[2026-01-10 07:01:03] 2026-01-10 12:00:17,020 | INFO     | did not find any defunct processes belonging to 1063750
[2026-01-10 07:01:03] 2026-01-10 12:00:17,021 | INFO     | ready for new job
[2026-01-10 07:01:03] 2026-01-10 12:00:17,021 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:01:03] 2026-01-10 12:00:17,025 | INFO     | ***************************************
[2026-01-10 07:01:03] 2026-01-10 12:00:17,025 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:01:03] 2026-01-10 12:00:17,025 | INFO     | ***************************************
[2026-01-10 07:01:03] 2026-01-10 12:00:17,025 | INFO     | 
[2026-01-10 07:01:03] 2026-01-10 12:00:17,027 | INFO     | architecture information:
[2026-01-10 07:01:03] 2026-01-10 12:00:17,028 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:01:03] 2026-01-10 12:00:17,078 | INFO     | cat /etc/os-release:
[2026-01-10 07:01:03] NAME="CentOS Linux"
[2026-01-10 07:01:03] VERSION="7 (Core)"
[2026-01-10 07:01:03] ID="centos"
[2026-01-10 07:01:03] ID_LIKE="rhel fedora"
[2026-01-10 07:01:03] VERSION_ID="7"
[2026-01-10 07:01:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:01:03] ANSI_COLOR="0;31"
[2026-01-10 07:01:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:01:03] HOME_URL="https://www.centos.org/"
[2026-01-10 07:01:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:01:03] 
[2026-01-10 07:01:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:01:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:01:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:01:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:01:03] 
[2026-01-10 07:01:03] 2026-01-10 12:00:17,078 | INFO     | ***************************************
[2026-01-10 07:01:03] 2026-01-10 12:00:17,598 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 07:01:03] 2026-01-10 12:00:17,732 | INFO     | sufficient remaining disk space (53230960640 B)
[2026-01-10 07:01:03] 2026-01-10 12:00:17,733 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:01:03] 2026-01-10 12:00:17,737 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:01:03] 2026-01-10 12:00:17,737 | INFO     | update_server=False
[2026-01-10 07:01:03] 2026-01-10 12:00:17,737 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:01:03] 2026-01-10 12:00:17,739 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:01:03] 2026-01-10 12:00:18,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:01:03] 2026-01-10 12:00:18,609 | INFO     | aborting loop
[2026-01-10 07:01:03] 2026-01-10 12:00:18,744 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:18,774 | INFO     | all data control threads have been joined
[2026-01-10 07:01:03] 2026-01-10 12:00:18,856 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:01:03] 2026-01-10 12:00:19,044 | INFO     | [job] validate thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:19,056 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:19,092 | INFO     | all job control threads have been joined
[2026-01-10 07:01:03] 2026-01-10 12:00:19,093 | INFO     | all payload control threads have been joined
[2026-01-10 07:01:03] 2026-01-10 12:00:19,109 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:19,237 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:19,259 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:01:03] 2026-01-10 12:00:19,470 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:19,495 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:19,596 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:19,614 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:19,746 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:19,780 | INFO     | [data] control thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:19,817 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:19,862 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:20,103 | INFO     | [job] control thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:20,127 | INFO     | [payload] control thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:23,291 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:01:03] 2026-01-10 12:00:49,754 | INFO     | PID=1053069 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 07:01:03] 2026-01-10 12:00:49,758 | INFO     | .. there are 24 such processes running
[2026-01-10 07:01:03] 2026-01-10 12:00:49,758 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:01:03] 2026-01-10 12:00:49,758 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:01:03] 2026-01-10 12:00:49,759 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:01:03] 2026-01-10 12:00:55,469 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:01:03] 2026-01-10 12:00:56,621 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140135409678144)>', '<ExcThread(monitor, started 140134775252736)>']
[2026-01-10 07:01:03] 2026-01-10 12:00:56,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:01:03] 2026-01-10 12:00:56,806 | INFO     | [monitor] control thread has ended
[2026-01-10 07:01:03] 2026-01-10 12:01:01,649 | INFO     | all workflow threads have been joined
[2026-01-10 07:01:03] 2026-01-10 12:01:01,649 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:01:03] 2026-01-10 12:01:01,650 | INFO     | traces error code: 0
[2026-01-10 07:01:03] 2026-01-10 12:01:01,650 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:01:03] 2026-01-10 12:01:02,609 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:01:03] 2026-01-10 12:01:02,637 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:01:03] 2026-01-10 12:01:02,665 [wrapper] pilotpid: 1053069
[2026-01-10 07:01:03] 2026-01-10 12:01:02,684 [wrapper] Pilot exit status: 0
[2026-01-10 07:01:03] 2026-01-10 12:01:02,709 [wrapper] pandaids: 6963162136 6963162136
[2026-01-10 07:01:03] 2026-01-10 12:01:02,797 [wrapper] cleanup supervisor_pilot  301418 1053070
[2026-01-10 07:01:03] 2026-01-10 12:01:02,801 [wrapper] Test setup, not cleaning
[2026-01-10 07:01:03] 2026-01-10 12:01:02,806 [wrapper] apfmon messages muted
[2026-01-10 07:01:03] 2026-01-10 12:01:02,811 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:01:03] 2026-01-10 12:01:02,814 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:01:03]  *** Error codes and diagnostics ***
[2026-01-10 07:01:03]     "exeErrorCode": 0,
[2026-01-10 07:01:03]     "exeErrorDiag": "",
[2026-01-10 07:01:03]     "pilotErrorCode": 0,
[2026-01-10 07:01:03]     "pilotErrorDiag": "",
[2026-01-10 07:01:03]  *** Listing of results directory ***
[2026-01-10 07:01:03] total 667236
[2026-01-10 07:01:03] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-10 07:01:03] -rwx------. 1 boincer umatlas     36322 Jan  8 16:49 runpilot2-wrapper.sh
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 16:51 queuedata.json
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:01:03] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:04 run_atlas
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:04 job.xml
[2026-01-10 07:01:03] -rw-r--r--. 3 boincer umatlas 223099422 Jan  9 00:04 EVNT.47898824._001239.pool.root.1
[2026-01-10 07:01:03] -rw-r--r--. 3 boincer umatlas 223099422 Jan  9 00:04 ATLAS.root_0
[2026-01-10 07:01:03] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:04 start_atlas.sh
[2026-01-10 07:01:03] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:04 shared
[2026-01-10 07:01:03] -rw-r--r--. 2 boincer umatlas    592400 Jan  9 00:04 input.tar.gz
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:04 boinc_lockfile
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 19:12 pandaJob.out
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas        57 Jan  9 19:12 setup.sh.local
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas    989374 Jan  9 19:13 agis_schedconf.cvmfs.json
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas      6524 Jan 10 06:54 init_data.xml
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas 222252158 Jan 10 06:58 HITS.47898826._033763.pool.root.1
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas       532 Jan 10 06:58 boinc_task_state.xml
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas      1044 Jan 10 06:59 memory_monitor_summary.json
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas   1516240 Jan 10 06:59 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas    827484 Jan 10 06:59 log.47898826._033763.job.log.tgz.1
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas      7826 Jan 10 07:00 heartbeat.json
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas        96 Jan 10 07:00 pilot_heartbeat.json
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 07:00 boinc_mmap_file
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas        29 Jan 10 07:00 wrapper_checkpoint.txt
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas      4824 Jan 10 07:01 pilotlog.txt
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas   4613834 Jan 10 07:01 log.47898826._033763.job.log.1
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas       357 Jan 10 07:01 output.list
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas       620 Jan 10 07:01 runtime_log
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas   5457920 Jan 10 07:01 result.tar.gz
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas      9425 Jan 10 07:01 runtime_log.err
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas       783 Jan 10 07:01 FaiNDml3Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOelKDmjjaXRo.diag
[2026-01-10 07:01:03] -rw-r--r--. 1 boincer umatlas     23709 Jan 10 07:01 stderr.txt
[2026-01-10 07:01:03] HITS file was successfully produced:
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas 222252158 Jan 10 06:58 shared/HITS.pool.root.1
[2026-01-10 07:01:03]  *** Contents of shared directory: ***
[2026-01-10 07:01:03] total 440848
[2026-01-10 07:01:03] -rw-r--r--. 3 boincer umatlas 223099422 Jan  9 00:04 ATLAS.root_0
[2026-01-10 07:01:03] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:04 start_atlas.sh
[2026-01-10 07:01:03] -rw-r--r--. 2 boincer umatlas    592400 Jan  9 00:04 input.tar.gz
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas 222252158 Jan 10 06:58 HITS.pool.root.1
[2026-01-10 07:01:03] -rw-------. 1 boincer umatlas   5457920 Jan 10 07:01 result.tar.gz
07:01:04 (1046718): run_atlas exited; CPU time 117234.878254
07:01:04 (1046718): called boinc_finish(0)

</stderr_txt>
]]>

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