Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:33 (1599646): wrapper (7.7.26015): starting
00:03:33 (1599646): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 00:03:33] Arguments: --nthreads 12
[2026-01-09 00:03:33] Threads: 12
[2026-01-09 00:03:33] Checking for CVMFS
[2026-01-09 00:03:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 00:03:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 00:03:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 00:03:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 00:03:36] 2.13.3.0 5955 53624 410676 154931 3 505 27300391 32935936 15739 16776704 0 115868766 99.339 234679700 41492 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 00:03:36] CVMFS is ok
[2026-01-09 00:03:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 00:03:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 00:03:36] Further information can be found at the LHC@home message board.
[2026-01-09 00:03:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 00:03:36] Checking for apptainer binary...
[2026-01-09 00:03:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 00:03:36] Running /usr/bin/apptainer --version
[2026-01-09 00:03:36] apptainer version 1.4.5-2.el9
[2026-01-09 00:03:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 00:03:37] c6-1-24-4.aglt2.org
[2026-01-09 00:03:37] apptainer works
[2026-01-09 00:03:38] Set ATHENA_PROC_NUMBER=12
[2026-01-09 00:03:38] Set ATHENA_CORE_NUMBER=12
[2026-01-09 00:03:38] Starting ATLAS job with PandaID=6963161765
[2026-01-09 00:03:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 05:13:53]  *** The last 200 lines of the pilot log: ***
[2026-01-09 05:13:53] 2026-01-09 10:13:26,408 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 05:13:53] 2026-01-09 10:13:26,411 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2973.2994642857143
[2026-01-09 05:13:53] 2026-01-09 10:13:26,421 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963161765/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 05:13:53] 2026-01-09 10:13:26,422 | INFO     | extracted standard info from prmon json
[2026-01-09 05:13:53] 2026-01-09 10:13:26,422 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 05:13:53] 2026-01-09 10:13:26,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 05:13:53] 2026-01-09 10:13:26,422 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 05:13:53] 2026-01-09 10:13:26,423 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 05:13:53] 2026-01-09 10:13:26,428 | INFO     | fitting pss+swap vs Time
[2026-01-09 05:13:53] 2026-01-09 10:13:26,428 | INFO     | sum of square deviations: 8456393037.880424
[2026-01-09 05:13:53] 2026-01-09 10:13:26,430 | INFO     | sum of deviations: 112376557063.52144
[2026-01-09 05:13:53] 2026-01-09 10:13:26,431 | INFO     | mean x: 1767944430.6943521
[2026-01-09 05:13:53] 2026-01-09 10:13:26,431 | INFO     | mean y: 2624440.777408638
[2026-01-09 05:13:53] 2026-01-09 10:13:26,431 | INFO     | intersect: -23491495015.48386
[2026-01-09 05:13:53] 2026-01-09 10:13:26,431 | INFO     | chi2: 5.080765823588335
[2026-01-09 05:13:53] 2026-01-09 10:13:26,432 | INFO     | sum of square deviations: 8041993561.837859
[2026-01-09 05:13:53] 2026-01-09 10:13:26,434 | INFO     | sum of deviations: 151359174296.5541
[2026-01-09 05:13:53] 2026-01-09 10:13:26,434 | INFO     | mean x: 1767944278.2027028
[2026-01-09 05:13:53] 2026-01-09 10:13:26,434 | INFO     | mean y: 2638633.5574324327
[2026-01-09 05:13:53] 2026-01-09 10:13:26,434 | INFO     | intersect: -33272019458.798
[2026-01-09 05:13:53] 2026-01-09 10:13:26,434 | INFO     | chi2: 3.6605528696170784
[2026-01-09 05:13:53] 2026-01-09 10:13:26,435 | INFO     | current chi2=3.6605528696170784 (change=27.952733963405123 %)
[2026-01-09 05:13:53] 2026-01-09 10:13:26,435 | INFO     | sum of square deviations: 7641361907.752579
[2026-01-09 05:13:53] 2026-01-09 10:13:26,437 | INFO     | sum of deviations: 148631116538.61862
[2026-01-09 05:13:53] 2026-01-09 10:13:26,437 | INFO     | mean x: 1767944125.7113402
[2026-01-09 05:13:53] 2026-01-09 10:13:26,437 | INFO     | mean y: 2637595.0549828177
[2026-01-09 05:13:53] 2026-01-09 10:13:26,437 | INFO     | intersect: -34385409006.39867
[2026-01-09 05:13:53] 2026-01-09 10:13:26,438 | INFO     | chi2: 3.660128407850401
[2026-01-09 05:13:53] 2026-01-09 10:13:26,438 | INFO     | current chi2=3.660128407850401 (change=0.01159556443510523 %)
[2026-01-09 05:13:53] 2026-01-09 10:13:26,438 | INFO     | right removable region: 290
[2026-01-09 05:13:53] 2026-01-09 10:13:26,438 | INFO     | sum of square deviations: 8041884310.429053
[2026-01-09 05:13:53] 2026-01-09 10:13:26,440 | INFO     | sum of deviations: 23140285865.983154
[2026-01-09 05:13:53] 2026-01-09 10:13:26,441 | INFO     | mean x: 1767944583.2060812
[2026-01-09 05:13:53] 2026-01-09 10:13:26,441 | INFO     | mean y: 2657221.7871621624
[2026-01-09 05:13:53] 2026-01-09 10:13:26,441 | INFO     | intersect: -5084551381.493836
[2026-01-09 05:13:53] 2026-01-09 10:13:26,441 | INFO     | chi2: 2.156119108362337
[2026-01-09 05:13:53] 2026-01-09 10:13:26,441 | INFO     | current chi2=2.156119108362337 (change=57.56310794029946 %)
[2026-01-09 05:13:53] 2026-01-09 10:13:26,442 | INFO     | sum of square deviations: 7641215264.584149
[2026-01-09 05:13:53] 2026-01-09 10:13:26,444 | INFO     | sum of deviations: -12547834682.570457
[2026-01-09 05:13:53] 2026-01-09 10:13:26,444 | INFO     | mean x: 1767944735.7044673
[2026-01-09 05:13:53] 2026-01-09 10:13:26,444 | INFO     | mean y: 2670786.9003436426
[2026-01-09 05:13:53] 2026-01-09 10:13:26,444 | INFO     | intersect: 2905857976.817531
[2026-01-09 05:13:53] 2026-01-09 10:13:26,444 | INFO     | chi2: 1.7105970592428985
[2026-01-09 05:13:53] 2026-01-09 10:13:26,444 | INFO     | current chi2=1.7105970592428985 (change=20.66314645566269 %)
[2026-01-09 05:13:53] 2026-01-09 10:13:26,445 | INFO     | left removable region: 20
[2026-01-09 05:13:53] 2026-01-09 10:13:26,445 | INFO     | sum of square deviations: 6103527462.29998
[2026-01-09 05:13:53] 2026-01-09 10:13:26,447 | INFO     | sum of deviations: -6127633191.433331
[2026-01-09 05:13:53] 2026-01-09 10:13:26,447 | INFO     | mean x: 1767944705.2333333
[2026-01-09 05:13:53] 2026-01-09 10:13:26,447 | INFO     | mean y: 2700071.959259259
[2026-01-09 05:13:53] 2026-01-09 10:13:26,447 | INFO     | intersect: 1777627230.609954
[2026-01-09 05:13:53] 2026-01-09 10:13:26,447 | INFO     | chi2: 0.007055504027329968
[2026-01-09 05:13:53] 2026-01-09 10:13:26,447 | INFO     | current memory leak: -1.00 B/s (using 270 data points, chi2=0.01)
[2026-01-09 05:13:53] 2026-01-09 10:13:26,448 | INFO     | could have reported an average CPU frequency of 3024 MHz (14 samples)
[2026-01-09 05:13:53] 2026-01-09 10:13:26,448 | INFO     | ..............................
[2026-01-09 05:13:53] 2026-01-09 10:13:26,448 | INFO     | . Timing measurements:
[2026-01-09 05:13:53] 2026-01-09 10:13:26,449 | INFO     | . get job = 0 s
[2026-01-09 05:13:53] 2026-01-09 10:13:26,449 | INFO     | . initial setup = 6 s
[2026-01-09 05:13:53] 2026-01-09 10:13:26,449 | INFO     | . payload setup = 49 s
[2026-01-09 05:13:53] 2026-01-09 10:13:26,449 | INFO     | . stage-in = 0 s
[2026-01-09 05:13:53] 2026-01-09 10:13:26,449 | INFO     | . payload execution = 18345 s
[2026-01-09 05:13:53] 2026-01-09 10:13:26,449 | INFO     | . stage-out = 2 s
[2026-01-09 05:13:53] 2026-01-09 10:13:26,449 | INFO     | . log creation = 0 s
[2026-01-09 05:13:53] 2026-01-09 10:13:26,449 | INFO     | ..............................
[2026-01-09 05:13:53] 2026-01-09 10:13:26,537 | INFO     | time since job start (18494s) is within the limit (349056.0s)
[2026-01-09 05:13:53] 2026-01-09 10:13:26,538 | INFO     | 
[2026-01-09 05:13:53] 2026-01-09 10:13:26,539 | INFO     | job summary report
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | --------------------------------------------------
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | PanDA job id: 6963161765
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | task id: 47898826
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | errors: (none)
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | pilot state: finished 
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | transexitcode: 0
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | exeerrorcode: 0
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | exeerrordiag: 
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | exitcode: 0
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | exitmsg: OK
[2026-01-09 05:13:53] 2026-01-09 10:13:26,540 | INFO     | cpuconsumptiontime: 57705 s
[2026-01-09 05:13:53] 2026-01-09 10:13:26,541 | INFO     | nevents: 400
[2026-01-09 05:13:53] 2026-01-09 10:13:26,541 | INFO     | neventsw: 0
[2026-01-09 05:13:53] 2026-01-09 10:13:26,541 | INFO     | pid: 1624259
[2026-01-09 05:13:53] 2026-01-09 10:13:26,541 | INFO     | pgrp: 1624259
[2026-01-09 05:13:53] 2026-01-09 10:13:26,541 | INFO     | corecount: 12
[2026-01-09 05:13:53] 2026-01-09 10:13:26,541 | INFO     | event service: False
[2026-01-09 05:13:53] 2026-01-09 10:13:26,541 | INFO     | sizes: {0: 2283143, 2: 2283744, 3: 2284027, 4: 2284027, 14: 2284055, 25: 2284083, 36: 2284239, 38: 2284529, 48: 2284557, 18399: 2316817, 18402: 2325815, 18404: 232
[2026-01-09 05:13:53] 2026-01-09 10:13:26,541 | INFO     | --------------------------------------------------
[2026-01-09 05:13:53] 2026-01-09 10:13:26,541 | INFO     | 
[2026-01-09 05:13:53] 2026-01-09 10:13:26,541 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 05:13:53] 2026-01-09 10:13:26,575 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,576 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,576 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,576 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,576 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,577 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,577 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,577 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,577 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 05:13:53] 2026-01-09 10:13:26,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,577 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 05:13:53] 2026-01-09 10:13:26,577 | INFO     | job 6963161765 has completed (purged errors)
[2026-01-09 05:13:53] 2026-01-09 10:13:26,577 | INFO     | overall cleanup function is called
[2026-01-09 05:13:53] 2026-01-09 10:13:27,594 | INFO     | --- collectZombieJob: --- 10, [1624259]
[2026-01-09 05:13:53] 2026-01-09 10:13:27,594 | INFO     | zombie collector waiting for pid 1624259
[2026-01-09 05:13:53] 2026-01-09 10:13:27,595 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 05:13:53] 2026-01-09 10:13:27,595 | INFO     | collected zombie processes
[2026-01-09 05:13:53] 2026-01-09 10:13:27,595 | INFO     | will attempt to kill all subprocesses of pid=1624259
[2026-01-09 05:13:53] 2026-01-09 10:13:28,248 | INFO     | PID=1607557 has CPU usage=11.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-09 05:13:53] 2026-01-09 10:13:28,248 | INFO     | .. there are 12 such processes running
[2026-01-09 05:13:53] 2026-01-09 10:13:28,279 | INFO     | process IDs to be killed: [1624259] (in reverse order)
[2026-01-09 05:13:53] 2026-01-09 10:13:28,380 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 05:13:53] 2026-01-09 10:13:28,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 05:13:53] 2026-01-09 10:13:28,396 | INFO     | did not find any defunct processes belonging to 1624259
[2026-01-09 05:13:53] 2026-01-09 10:13:28,409 | INFO     | did not find any defunct processes belonging to 1624259
[2026-01-09 05:13:53] 2026-01-09 10:13:28,410 | INFO     | ready for new job
[2026-01-09 05:13:53] 2026-01-09 10:13:28,410 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 05:13:53] 2026-01-09 10:13:28,413 | INFO     | ***************************************
[2026-01-09 05:13:53] 2026-01-09 10:13:28,413 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 05:13:53] 2026-01-09 10:13:28,413 | INFO     | ***************************************
[2026-01-09 05:13:53] 2026-01-09 10:13:28,413 | INFO     | 
[2026-01-09 05:13:53] 2026-01-09 10:13:28,416 | INFO     | architecture information:
[2026-01-09 05:13:53] 2026-01-09 10:13:28,417 | INFO     | executing command: cat /etc/os-release
[2026-01-09 05:13:53] 2026-01-09 10:13:28,435 | INFO     | cat /etc/os-release:
[2026-01-09 05:13:53] NAME="CentOS Linux"
[2026-01-09 05:13:53] VERSION="7 (Core)"
[2026-01-09 05:13:53] ID="centos"
[2026-01-09 05:13:53] ID_LIKE="rhel fedora"
[2026-01-09 05:13:53] VERSION_ID="7"
[2026-01-09 05:13:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 05:13:53] ANSI_COLOR="0;31"
[2026-01-09 05:13:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 05:13:53] HOME_URL="https://www.centos.org/"
[2026-01-09 05:13:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 05:13:53] 
[2026-01-09 05:13:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 05:13:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 05:13:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 05:13:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 05:13:53] 
[2026-01-09 05:13:53] 2026-01-09 10:13:28,435 | INFO     | ***************************************
[2026-01-09 05:13:53] 2026-01-09 10:13:28,939 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 05:13:53] 2026-01-09 10:13:28,998 | INFO     | sufficient remaining disk space (74428973056 B)
[2026-01-09 05:13:53] 2026-01-09 10:13:28,998 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 05:13:53] 2026-01-09 10:13:28,999 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 05:13:53] 2026-01-09 10:13:28,999 | INFO     | update_server=False
[2026-01-09 05:13:53] 2026-01-09 10:13:28,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 05:13:53] 2026-01-09 10:13:28,999 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:13:53] 2026-01-09 10:13:28,999 | INFO     | aborting loop
[2026-01-09 05:13:53] 2026-01-09 10:13:28,999 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 05:13:53] 2026-01-09 10:13:29,000 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 05:13:53] 2026-01-09 10:13:29,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 05:13:53] 2026-01-09 10:13:29,000 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 05:13:53] 2026-01-09 10:13:29,120 | INFO     | all payload control threads have been joined
[2026-01-09 05:13:53] 2026-01-09 10:13:29,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 05:13:53] 2026-01-09 10:13:29,411 | INFO     | all data control threads have been joined
[2026-01-09 05:13:53] 2026-01-09 10:13:29,738 | INFO     | all job control threads have been joined
[2026-01-09 05:13:53] 2026-01-09 10:13:29,831 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 05:13:53] 2026-01-09 10:13:30,004 | INFO     | [job] retrieve thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:30,011 | INFO     | [job] job monitor thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:30,025 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:30,125 | INFO     | [payload] control thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:30,417 | INFO     | [data] control thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:30,751 | INFO     | [job] control thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:30,833 | INFO     | [data] copytool_in thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:30,985 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:31,080 | INFO     | [job] validate thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:31,096 | INFO     | [payload] validate_post thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:31,103 | INFO     | [payload] failed_post thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:31,175 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:31,423 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:31,550 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:13:53] 2026-01-09 10:13:31,838 | INFO     | [data] copytool_out thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:32,556 | INFO     | [job] queue monitor thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:33,364 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 05:13:53] 2026-01-09 10:13:46,087 | INFO     | [monitor] cgroup control has ended
[2026-01-09 05:13:53] 2026-01-09 10:13:47,800 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139988560607040)>', '<ExcThread(monitor, started 139988050097920)>']
[2026-01-09 05:13:53] 2026-01-09 10:13:48,124 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 05:13:53] 2026-01-09 10:13:48,125 | INFO     | [monitor] control thread has ended
[2026-01-09 05:13:53] 2026-01-09 10:13:52,827 | INFO     | all workflow threads have been joined
[2026-01-09 05:13:53] 2026-01-09 10:13:52,827 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 05:13:53] 2026-01-09 10:13:52,830 | INFO     | traces error code: 0
[2026-01-09 05:13:53] 2026-01-09 10:13:52,831 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 05:13:53] 2026-01-09 10:13:53,318 [wrapper] ==== pilot stdout END ====
[2026-01-09 05:13:53] 2026-01-09 10:13:53,321 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 05:13:53] 2026-01-09 10:13:53,324 [wrapper] pilotpid: 1607557
[2026-01-09 05:13:53] 2026-01-09 10:13:53,327 [wrapper] Pilot exit status: 0
[2026-01-09 05:13:53] 2026-01-09 10:13:53,342 [wrapper] pandaids: 6963161765
[2026-01-09 05:13:53] 2026-01-09 10:13:53,415 [wrapper] cleanup supervisor_pilot 3047801 1607558
[2026-01-09 05:13:53] 2026-01-09 10:13:53,418 [wrapper] Test setup, not cleaning
[2026-01-09 05:13:53] 2026-01-09 10:13:53,421 [wrapper] apfmon messages muted
[2026-01-09 05:13:53] 2026-01-09 10:13:53,424 [wrapper] ==== wrapper stdout END ====
[2026-01-09 05:13:53] 2026-01-09 10:13:53,427 [wrapper] ==== wrapper stderr END ====
[2026-01-09 05:13:53]  *** Error codes and diagnostics ***
[2026-01-09 05:13:53]     "exeErrorCode": 0,
[2026-01-09 05:13:53]     "exeErrorDiag": "",
[2026-01-09 05:13:53]     "pilotErrorCode": 0,
[2026-01-09 05:13:53]     "pilotErrorDiag": "",
[2026-01-09 05:13:53]  *** Listing of results directory ***
[2026-01-09 05:13:53] total 450464
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 05:13:53] -rwx------. 1 boincer umatlas     36322 Jan  8 16:49 runpilot2-wrapper.sh
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 16:51 queuedata.json
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas       100 Jan  9 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 05:13:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 00:03 run_atlas
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas       105 Jan  9 00:03 job.xml
[2026-01-09 05:13:53] -rw-r--r--. 2 boincer umatlas 223990925 Jan  9 00:03 EVNT.47898824._001225.pool.root.1
[2026-01-09 05:13:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:03 start_atlas.sh
[2026-01-09 05:13:53] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 00:03 shared
[2026-01-09 05:13:53] -rw-r--r--. 2 boincer umatlas    592400 Jan  9 00:03 input.tar.gz
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas         0 Jan  9 00:03 boinc_lockfile
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 00:03 pandaJob.out
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas        57 Jan  9 00:03 setup.sh.local
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas    989771 Jan  9 00:05 agis_schedconf.cvmfs.json
[2026-01-09 05:13:53] drwx------. 5 boincer umatlas      4096 Jan  9 00:05 pilot3
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas      6843 Jan  9 05:11 init_data.xml
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas 227814992 Jan  9 05:11 HITS.47898826._033422.pool.root.1
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas       531 Jan  9 05:11 boinc_task_state.xml
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas        95 Jan  9 05:12 pilot_heartbeat.json
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas      1044 Jan  9 05:13 memory_monitor_summary.json
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas   1516240 Jan  9 05:13 agis_ddmendpoints.agis.ALL.json
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas    574895 Jan  9 05:13 log.47898826._033422.job.log.tgz.1
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas      7842 Jan  9 05:13 heartbeat.json
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas        28 Jan  9 05:13 wrapper_checkpoint.txt
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 05:13 boinc_mmap_file
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas      4552 Jan  9 05:13 pilotlog.txt
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas   2202140 Jan  9 05:13 log.47898826._033422.job.log.1
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas       357 Jan  9 05:13 output.list
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas       620 Jan  9 05:13 runtime_log
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas   2795520 Jan  9 05:13 result.tar.gz
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas      9350 Jan  9 05:13 runtime_log.err
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas       658 Jan  9 05:13 nH2KDmZ3Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBdlKDmRrn0Zm.diag
[2026-01-09 05:13:53] -rw-r--r--. 1 boincer umatlas     21257 Jan  9 05:13 stderr.txt
[2026-01-09 05:13:53] HITS file was successfully produced:
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas 227814992 Jan  9 05:11 shared/HITS.pool.root.1
[2026-01-09 05:13:53]  *** Contents of shared directory: ***
[2026-01-09 05:13:53] total 444552
[2026-01-09 05:13:53] -rw-r--r--. 2 boincer umatlas 223990925 Jan  9 00:03 ATLAS.root_0
[2026-01-09 05:13:53] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 00:03 start_atlas.sh
[2026-01-09 05:13:53] -rw-r--r--. 2 boincer umatlas    592400 Jan  9 00:03 input.tar.gz
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas 227814992 Jan  9 05:11 HITS.pool.root.1
[2026-01-09 05:13:53] -rw-------. 1 boincer umatlas   2795520 Jan  9 05:13 result.tar.gz
05:13:55 (1599646): run_atlas exited; CPU time 58170.498442
05:13:55 (1599646): called boinc_finish(0)

</stderr_txt>
]]>

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