Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:19:26 (20397): wrapper (7.7.26015): starting
23:19:26 (20397): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 23:19:26] Arguments: --nthreads 12
[2026-01-08 23:19:26] Threads: 12
[2026-01-08 23:19:26] Checking for CVMFS
[2026-01-08 23:19:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 23:19:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 23:19:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 23:19:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 23:19:26] 2.11.2.0 3009 135819 96524 154931 2 16 17906395 20275200 1 130560 0 48962683 99.878 8079631 39463 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 23:19:26] CVMFS is ok
[2026-01-08 23:19:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 23:19:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 23:19:26] Further information can be found at the LHC@home message board.
[2026-01-08 23:19:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 23:19:26] Checking for apptainer binary...
[2026-01-08 23:19:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 23:19:26] Running /usr/bin/apptainer --version
[2026-01-08 23:19:26] apptainer version 1.3.2-1.el7
[2026-01-08 23:19:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 23:19:28] c-115-42.aglt2.org
[2026-01-08 23:19:28] apptainer works
[2026-01-08 23:19:28] Set ATHENA_PROC_NUMBER=12
[2026-01-08 23:19:28] Set ATHENA_CORE_NUMBER=12
[2026-01-08 23:19:28] Starting ATLAS job with PandaID=6963160779
[2026-01-08 23:19:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 00:53:05]  *** The last 200 lines of the pilot log: ***
[2026-01-09 00:53:05]  mtime=0
[2026-01-09 00:53:05]  protocol_id=None
[2026-01-09 00:53:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-09 00:53:05]  replicas=None
[2026-01-09 00:53:05]  scope=mc23_13p6TeV
[2026-01-09 00:53:05]  status=None
[2026-01-09 00:53:05]  status_code=0
[2026-01-09 00:53:05]  storage_token=
[2026-01-09 00:53:05]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6963160779/log.47898826._032602.job.log.tgz.1
[2026-01-09 00:53:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/09/log.47898826._032602.job.log.tgz.1
[2026-01-09 00:53:05]  workdir=None
[2026-01-09 00:53:05] ]
[2026-01-09 00:53:05] 2026-01-09 05:52:24,886 | INFO     | transferring file log.47898826._032602.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6963160779/log.47898826._032602.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-01-09 00:53:05] 2026-01-09 05:52:24,887 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6963160779/log.47898826._032602.job.log.tgz.1 /tmp/boinchome/slots/0/log.47898826._032602.job
[2026-01-09 00:53:05] 2026-01-09 05:52:24,907 | INFO     | adding to output.list: log.47898826._032602.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/09/log.47898826._032602.job.log.tg
[2026-01-09 00:53:05] 2026-01-09 05:52:24,908 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-09 00:53:05] 2026-01-09 05:52:24,908 | INFO     | summary of transferred files:
[2026-01-09 00:53:05] 2026-01-09 05:52:24,909 | INFO     |  -- lfn=log.47898826._032602.job.log.tgz.1, status_code=0, status=transferred
[2026-01-09 00:53:05] 2026-01-09 05:52:24,909 | INFO     | stage-out finished correctly
[2026-01-09 00:53:05] 2026-01-09 05:52:25,238 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 00:53:05] 2026-01-09 05:52:25,726 | INFO     | time since job start (5563s) is within the limit (349056.0s)
[2026-01-09 00:53:05] 2026-01-09 05:52:27,732 | INFO     | time since job start (5565s) is within the limit (349056.0s)
[2026-01-09 00:53:05] 2026-01-09 05:52:27,850 | INFO     | job 6963160779 has state=finished
[2026-01-09 00:53:05] 2026-01-09 05:52:27,850 | INFO     | preparing for final server update for job 6963160779 in state='finished'
[2026-01-09 00:53:05] 2026-01-09 05:52:27,851 | INFO     | this job has now completed (state=finished)
[2026-01-09 00:53:05] 2026-01-09 05:52:27,851 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 00:53:05] 2026-01-09 05:52:27,851 | INFO     | log transfer has been attempted: DONE
[2026-01-09 00:53:05] 2026-01-09 05:52:27,852 | INFO     | job 6963160779 has finished - writing final server update
[2026-01-09 00:53:05] 2026-01-09 05:52:27,852 | INFO     | total number of processed events: 400 (read)
[2026-01-09 00:53:05] 2026-01-09 05:52:27,853 | INFO     | executing command: lscpu
[2026-01-09 00:53:05] 2026-01-09 05:52:27,878 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 00:53:05] 2026-01-09 05:52:29,577 | WARNING  | process 30997 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 00:53:05] 2026-01-09 05:52:29,577 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963160779/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 00:53:05] 2026-01-09 05:52:29,665 | INFO     | number of running child processes to parent process 30997: 1
[2026-01-09 00:53:05] 2026-01-09 05:52:29,665 | INFO     | maximum number of monitored processes: 6
[2026-01-09 00:53:05] 2026-01-09 05:52:29,737 | INFO     | time since job start (5567s) is within the limit (349056.0s)
[2026-01-09 00:53:05] 2026-01-09 05:52:31,742 | INFO     | time since job start (5569s) is within the limit (349056.0s)
[2026-01-09 00:53:05] 2026-01-09 05:52:32,168 | INFO     | monitor loop #415: job 0:6963160779 is in state 'finished'
[2026-01-09 00:53:05] 2026-01-09 05:52:32,168 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 00:53:05] 2026-01-09 05:52:32,339 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-09 00:53:05] 2026-01-09 05:52:32,342 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1740.1666666666667
[2026-01-09 00:53:05] 2026-01-09 05:52:32,345 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963160779/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 00:53:05] 2026-01-09 05:52:32,345 | INFO     | extracted standard info from prmon json
[2026-01-09 00:53:05] 2026-01-09 05:52:32,345 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 00:53:05] 2026-01-09 05:52:32,346 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 00:53:05] 2026-01-09 05:52:32,346 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 00:53:05] 2026-01-09 05:52:32,346 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 00:53:05] 2026-01-09 05:52:32,349 | INFO     | fitting pss+swap vs Time
[2026-01-09 00:53:05] 2026-01-09 05:52:32,349 | INFO     | sum of square deviations: 183761585.0
[2026-01-09 00:53:05] 2026-01-09 05:52:32,350 | INFO     | sum of deviations: -11214938694.000002
[2026-01-09 00:53:05] 2026-01-09 05:52:32,350 | INFO     | mean x: 1767935246.5
[2026-01-09 00:53:05] 2026-01-09 05:52:32,350 | INFO     | mean y: 2838039.476190476
[2026-01-09 00:53:05] 2026-01-09 05:52:32,351 | INFO     | intersect: 107899629441.54906
[2026-01-09 00:53:05] 2026-01-09 05:52:32,351 | INFO     | chi2: 0.13934114588649668
[2026-01-09 00:53:05] 2026-01-09 05:52:32,351 | INFO     | current memory leak: -61.03 B/s (using 84 data points, chi2=0.14)
[2026-01-09 00:53:05] 2026-01-09 05:52:32,352 | INFO     | could have reported an average CPU frequency of 2153 MHz (7 samples)
[2026-01-09 00:53:05] 2026-01-09 05:52:32,352 | INFO     | ..............................
[2026-01-09 00:53:05] 2026-01-09 05:52:32,352 | INFO     | . Timing measurements:
[2026-01-09 00:53:05] 2026-01-09 05:52:32,352 | INFO     | . get job = 0 s
[2026-01-09 00:53:05] 2026-01-09 05:52:32,352 | INFO     | . initial setup = 2 s
[2026-01-09 00:53:05] 2026-01-09 05:52:32,353 | INFO     | . payload setup = 6 s
[2026-01-09 00:53:05] 2026-01-09 05:52:32,353 | INFO     | . stage-in = 0 s
[2026-01-09 00:53:05] 2026-01-09 05:52:32,353 | INFO     | . payload execution = 5535 s
[2026-01-09 00:53:05] 2026-01-09 05:52:32,353 | INFO     | . stage-out = 0 s
[2026-01-09 00:53:05] 2026-01-09 05:52:32,353 | INFO     | . log creation = 0 s
[2026-01-09 00:53:05] 2026-01-09 05:52:32,353 | INFO     | ..............................
[2026-01-09 00:53:05] 2026-01-09 05:52:32,427 | INFO     | 
[2026-01-09 00:53:05] 2026-01-09 05:52:32,428 | INFO     | job summary report
[2026-01-09 00:53:05] 2026-01-09 05:52:32,428 | INFO     | --------------------------------------------------
[2026-01-09 00:53:05] 2026-01-09 05:52:32,428 | INFO     | PanDA job id: 6963160779
[2026-01-09 00:53:05] 2026-01-09 05:52:32,428 | INFO     | task id: 47898826
[2026-01-09 00:53:05] 2026-01-09 05:52:32,428 | INFO     | errors: (none)
[2026-01-09 00:53:05] 2026-01-09 05:52:32,428 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 00:53:05] 2026-01-09 05:52:32,429 | INFO     | pilot state: finished 
[2026-01-09 00:53:05] 2026-01-09 05:52:32,429 | INFO     | transexitcode: 0
[2026-01-09 00:53:05] 2026-01-09 05:52:32,429 | INFO     | exeerrorcode: 0
[2026-01-09 00:53:05] 2026-01-09 05:52:32,429 | INFO     | exeerrordiag: 
[2026-01-09 00:53:05] 2026-01-09 05:52:32,429 | INFO     | exitcode: 0
[2026-01-09 00:53:05] 2026-01-09 05:52:32,429 | INFO     | exitmsg: OK
[2026-01-09 00:53:05] 2026-01-09 05:52:32,430 | INFO     | cpuconsumptiontime: 60520 s
[2026-01-09 00:53:05] 2026-01-09 05:52:32,430 | INFO     | nevents: 400
[2026-01-09 00:53:05] 2026-01-09 05:52:32,430 | INFO     | neventsw: 0
[2026-01-09 00:53:05] 2026-01-09 05:52:32,430 | INFO     | pid: 30997
[2026-01-09 00:53:05] 2026-01-09 05:52:32,430 | INFO     | pgrp: 30997
[2026-01-09 00:53:05] 2026-01-09 05:52:32,430 | INFO     | corecount: 12
[2026-01-09 00:53:05] 2026-01-09 05:52:32,431 | INFO     | event service: False
[2026-01-09 00:53:05] 2026-01-09 05:52:32,431 | INFO     | sizes: {0: 2283971, 5: 2284233, 11: 2284289, 5545: 2310873, 5546: 2319871, 5547: 2319927, 5554: 2320249}
[2026-01-09 00:53:05] 2026-01-09 05:52:32,431 | INFO     | --------------------------------------------------
[2026-01-09 00:53:05] 2026-01-09 05:52:32,431 | INFO     | 
[2026-01-09 00:53:05] 2026-01-09 05:52:32,431 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 00:53:05] 2026-01-09 05:52:32,457 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,457 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,457 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,457 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,457 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,458 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,458 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,458 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,458 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,458 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,458 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,459 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,459 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,459 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,459 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,459 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,459 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,460 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 00:53:05] 2026-01-09 05:52:32,460 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,460 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 00:53:05] 2026-01-09 05:52:32,460 | INFO     | job 6963160779 has completed (purged errors)
[2026-01-09 00:53:05] 2026-01-09 05:52:32,460 | INFO     | overall cleanup function is called
[2026-01-09 00:53:05] 2026-01-09 05:52:33,469 | INFO     | --- collectZombieJob: --- 10, [30997]
[2026-01-09 00:53:05] 2026-01-09 05:52:33,469 | INFO     | zombie collector waiting for pid 30997
[2026-01-09 00:53:05] 2026-01-09 05:52:33,469 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 00:53:05] 2026-01-09 05:52:33,469 | INFO     | collected zombie processes
[2026-01-09 00:53:05] 2026-01-09 05:52:33,469 | INFO     | will attempt to kill all subprocesses of pid=30997
[2026-01-09 00:53:05] 2026-01-09 05:52:33,557 | INFO     | process IDs to be killed: [30997] (in reverse order)
[2026-01-09 00:53:05] 2026-01-09 05:52:33,608 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 00:53:05] 2026-01-09 05:52:33,608 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 00:53:05] 2026-01-09 05:52:33,612 | INFO     | did not find any defunct processes belonging to 30997
[2026-01-09 00:53:05] 2026-01-09 05:52:33,615 | INFO     | did not find any defunct processes belonging to 30997
[2026-01-09 00:53:05] 2026-01-09 05:52:33,615 | INFO     | ready for new job
[2026-01-09 00:53:05] 2026-01-09 05:52:33,615 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 00:53:05] 2026-01-09 05:52:33,616 | INFO     | ***************************************
[2026-01-09 00:53:05] 2026-01-09 05:52:33,617 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 00:53:05] 2026-01-09 05:52:33,617 | INFO     | ***************************************
[2026-01-09 00:53:05] 2026-01-09 05:52:33,617 | INFO     | 
[2026-01-09 00:53:05] 2026-01-09 05:52:33,617 | INFO     | architecture information:
[2026-01-09 00:53:05] 2026-01-09 05:52:33,618 | INFO     | executing command: cat /etc/os-release
[2026-01-09 00:53:05] 2026-01-09 05:52:33,631 | INFO     | cat /etc/os-release:
[2026-01-09 00:53:05] NAME="CentOS Linux"
[2026-01-09 00:53:05] VERSION="7 (Core)"
[2026-01-09 00:53:05] ID="centos"
[2026-01-09 00:53:05] ID_LIKE="rhel fedora"
[2026-01-09 00:53:05] VERSION_ID="7"
[2026-01-09 00:53:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 00:53:05] ANSI_COLOR="0;31"
[2026-01-09 00:53:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 00:53:05] HOME_URL="https://www.centos.org/"
[2026-01-09 00:53:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 00:53:05] 
[2026-01-09 00:53:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 00:53:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 00:53:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 00:53:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 00:53:05] 
[2026-01-09 00:53:05] 2026-01-09 05:52:33,632 | INFO     | ***************************************
[2026-01-09 00:53:05] 2026-01-09 05:52:34,133 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 00:53:05] 2026-01-09 05:52:34,153 | INFO     | sufficient remaining disk space (18533580800 B)
[2026-01-09 00:53:05] 2026-01-09 05:52:34,153 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 00:53:05] 2026-01-09 05:52:34,153 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 00:53:05] 2026-01-09 05:52:34,153 | INFO     | update_server=False
[2026-01-09 00:53:05] 2026-01-09 05:52:34,154 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 00:53:05] 2026-01-09 05:52:34,154 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 00:53:05] 2026-01-09 05:52:34,154 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 00:53:05] 2026-01-09 05:52:34,154 | INFO     | aborting loop
[2026-01-09 00:53:05] 2026-01-09 05:52:34,189 | INFO     | all payload control threads have been joined
[2026-01-09 00:53:05] 2026-01-09 05:52:35,155 | INFO     | [job] retrieve thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:35,156 | INFO     | [job] job monitor thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:35,159 | INFO     | [job] queue monitor thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:35,194 | INFO     | [payload] control thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:35,241 | INFO     | all data control threads have been joined
[2026-01-09 00:53:05] 2026-01-09 05:52:35,281 | INFO     | [payload] failed_post thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:35,496 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 00:53:05] 2026-01-09 05:52:35,582 | INFO     | [job] validate thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:35,612 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:35,625 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:35,643 | INFO     | all job control threads have been joined
[2026-01-09 00:53:05] 2026-01-09 05:52:35,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 00:53:05] 2026-01-09 05:52:35,854 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:35,993 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:35,994 | INFO     | [data] copytool_in thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:36,246 | INFO     | [data] control thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:36,381 | INFO     | [payload] validate_post thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:36,649 | INFO     | [job] control thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:37,502 | INFO     | [data] copytool_out thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:39,824 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 00:53:05] 2026-01-09 05:52:50,671 | INFO     | [monitor] cgroup control has ended
[2026-01-09 00:53:05] 2026-01-09 05:52:50,791 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139724921038656)>', '<ExcThread(monitor, started 139724186437376)>']
[2026-01-09 00:53:05] 2026-01-09 05:52:55,817 | INFO     | all workflow threads have been joined
[2026-01-09 00:53:05] 2026-01-09 05:52:55,817 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 00:53:05] 2026-01-09 05:52:55,818 | INFO     | traces error code: 0
[2026-01-09 00:53:05] 2026-01-09 05:52:55,819 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 00:53:05] 2026-01-09 05:53:04,945 | INFO     | PID=24078 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 00:53:05] 2026-01-09 05:53:04,946 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 00:53:05] 2026-01-09 05:53:04,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 00:53:05] 2026-01-09 05:53:04,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 00:53:05] 2026-01-09 05:53:04,947 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 00:53:05] 2026-01-09 05:53:04,947 | INFO     | [monitor] control thread has ended
[2026-01-09 00:53:05] 2026-01-09 05:53:05,047 [wrapper] ==== pilot stdout END ====
[2026-01-09 00:53:05] 2026-01-09 05:53:05,051 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 00:53:05] 2026-01-09 05:53:05,055 [wrapper] pilotpid: 24078
[2026-01-09 00:53:05] 2026-01-09 05:53:05,058 [wrapper] Pilot exit status: 0
[2026-01-09 00:53:05] 2026-01-09 05:53:05,073 [wrapper] pandaids: 6963160779
[2026-01-09 00:53:05] 2026-01-09 05:53:05,114 [wrapper] cleanup supervisor_pilot 11455 24079
[2026-01-09 00:53:05] 2026-01-09 05:53:05,117 [wrapper] Test setup, not cleaning
[2026-01-09 00:53:05] 2026-01-09 05:53:05,121 [wrapper] apfmon messages muted
[2026-01-09 00:53:05] 2026-01-09 05:53:05,125 [wrapper] ==== wrapper stdout END ====
[2026-01-09 00:53:05] 2026-01-09 05:53:05,129 [wrapper] ==== wrapper stderr END ====
[2026-01-09 00:53:05]  *** Error codes and diagnostics ***
[2026-01-09 00:53:05]     "exeErrorCode": 0,
[2026-01-09 00:53:05]     "exeErrorDiag": "",
[2026-01-09 00:53:05]     "pilotErrorCode": 0,
[2026-01-09 00:53:05]     "pilotErrorDiag": "",
[2026-01-09 00:53:05]  *** Listing of results directory ***
[2026-01-09 00:53:05] total 443208
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 00:53:05] -rwx------ 1 boincer umatlas     36322 Jan  8 16:47 runpilot2-wrapper.sh
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 16:50 queuedata.json
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas       100 Jan  8 23:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 00:53:05] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 23:19 run_atlas
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas       105 Jan  8 23:19 job.xml
[2026-01-09 00:53:05] -rw-r--r-- 2 boincer umatlas 225330466 Jan  8 23:19 EVNT.47898824._001260.pool.root.1
[2026-01-09 00:53:05] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 23:19 start_atlas.sh
[2026-01-09 00:53:05] drwxrwx--x 2 boincer umatlas      4096 Jan  8 23:19 shared
[2026-01-09 00:53:05] -rw-r--r-- 2 boincer umatlas    592395 Jan  8 23:19 input.tar.gz
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas         0 Jan  8 23:19 boinc_lockfile
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas      2520 Jan  8 23:19 pandaJob.out
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas        57 Jan  8 23:19 setup.sh.local
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas    989771 Jan  8 23:19 agis_schedconf.cvmfs.json
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas   1516240 Jan  8 23:19 agis_ddmendpoints.agis.ALL.json
[2026-01-09 00:53:05] drwx------ 5 boincer umatlas      4096 Jan  8 23:19 pilot3
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas      5954 Jan  9 00:47 init_data.xml
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas 222218773 Jan  9 00:51 HITS.47898826._032602.pool.root.1
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas       530 Jan  9 00:52 boinc_task_state.xml
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas      1047 Jan  9 00:52 memory_monitor_summary.json
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas    389945 Jan  9 00:52 log.47898826._032602.job.log.tgz.1
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas      7857 Jan  9 00:52 heartbeat.json
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas      8192 Jan  9 00:53 boinc_mmap_file
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas        27 Jan  9 00:53 wrapper_checkpoint.txt
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas        95 Jan  9 00:53 pilot_heartbeat.json
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas       745 Jan  9 00:53 pilotlog.txt
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas    798824 Jan  9 00:53 log.47898826._032602.job.log.1
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas       357 Jan  9 00:53 output.list
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas       620 Jan  9 00:53 runtime_log
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas   1208320 Jan  9 00:53 result.tar.gz
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas      9344 Jan  9 00:53 runtime_log.err
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas       659 Jan  9 00:53 rkHMDmO2Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWZlKDmfDhGqn.diag
[2026-01-09 00:53:05] -rw-r--r-- 1 boincer umatlas     21767 Jan  9 00:53 stderr.txt
[2026-01-09 00:53:05] HITS file was successfully produced:
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas 222218773 Jan  9 00:51 shared/HITS.pool.root.1
[2026-01-09 00:53:05]  *** Contents of shared directory: ***
[2026-01-09 00:53:05] total 438848
[2026-01-09 00:53:05] -rw-r--r-- 2 boincer umatlas 225330466 Jan  8 23:19 ATLAS.root_0
[2026-01-09 00:53:05] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 23:19 start_atlas.sh
[2026-01-09 00:53:05] -rw-r--r-- 2 boincer umatlas    592395 Jan  8 23:19 input.tar.gz
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas 222218773 Jan  9 00:51 HITS.pool.root.1
[2026-01-09 00:53:05] -rw------- 1 boincer umatlas   1208320 Jan  9 00:53 result.tar.gz
00:53:06 (20397): run_atlas exited; CPU time 60488.571572
00:53:06 (20397): called boinc_finish(0)

</stderr_txt>
]]>

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