Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:35:37 (3448623): wrapper (7.7.26015): starting
17:35:37 (3448623): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 17:35:37] Arguments: --nthreads 3
[2026-01-09 17:35:37] Threads: 3
[2026-01-09 17:35:37] Checking for CVMFS
[2026-01-09 17:35:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:35:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:35:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:35:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:35:38] 2.9.2.0 2973026 1918 85148 154950 1 57 22012156 36864001 0 130560 0 1236355 99.989 74015 4685 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 17:35:38] CVMFS is ok
[2026-01-09 17:35:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:35:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:35:38] Further information can be found at the LHC@home message board.
[2026-01-09 17:35:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:35:38] Checking for apptainer binary...
[2026-01-09 17:35:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:35:38] Running /usr/bin/apptainer --version
[2026-01-09 17:35:38] apptainer version 1.4.1-1.1
[2026-01-09 17:35:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:35:38] atlasA228b
[2026-01-09 17:35:38] apptainer works
[2026-01-09 17:35:38] Set ATHENA_PROC_NUMBER=3
[2026-01-09 17:35:38] Set ATHENA_CORE_NUMBER=3
[2026-01-09 17:35:38] Starting ATLAS job with PandaID=6963156952
[2026-01-09 17:35:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:23:57]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:23:57] 2026-01-09 18:23:11,529 | INFO     | collected zombie processes
[2026-01-09 19:23:57] 2026-01-09 18:23:11,529 | INFO     | will attempt to kill all subprocesses of pid=3458788
[2026-01-09 19:23:57] 2026-01-09 18:23:11,571 | INFO     | process IDs to be killed: [3458788] (in reverse order)
[2026-01-09 19:23:57] 2026-01-09 18:23:11,598 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:23:57] 2026-01-09 18:23:11,598 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:23:57] 2026-01-09 18:23:11,600 | INFO     | did not find any defunct processes belonging to 3458788
[2026-01-09 19:23:57] 2026-01-09 18:23:11,601 | INFO     | did not find any defunct processes belonging to 3458788
[2026-01-09 19:23:57] 2026-01-09 18:23:11,601 | INFO     | ready for new job
[2026-01-09 19:23:57] 2026-01-09 18:23:11,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:23:57] 2026-01-09 18:23:11,602 | INFO     | ***************************************
[2026-01-09 19:23:57] 2026-01-09 18:23:11,602 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:23:57] 2026-01-09 18:23:11,602 | INFO     | ***************************************
[2026-01-09 19:23:57] 2026-01-09 18:23:11,602 | INFO     | 
[2026-01-09 19:23:57] 2026-01-09 18:23:11,602 | INFO     | architecture information:
[2026-01-09 19:23:57] 2026-01-09 18:23:11,602 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:23:57] 2026-01-09 18:23:11,611 | INFO     | cat /etc/os-release:
[2026-01-09 19:23:57] NAME="CentOS Linux"
[2026-01-09 19:23:57] VERSION="7 (Core)"
[2026-01-09 19:23:57] ID="centos"
[2026-01-09 19:23:57] ID_LIKE="rhel fedora"
[2026-01-09 19:23:57] VERSION_ID="7"
[2026-01-09 19:23:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:23:57] ANSI_COLOR="0;31"
[2026-01-09 19:23:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:23:57] HOME_URL="https://www.centos.org/"
[2026-01-09 19:23:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:23:57] 
[2026-01-09 19:23:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:23:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:23:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:23:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:23:57] 
[2026-01-09 19:23:57] 2026-01-09 18:23:11,611 | INFO     | ***************************************
[2026-01-09 19:23:57] 2026-01-09 18:23:12,114 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 19:23:57] 2026-01-09 18:23:12,125 | INFO     | sufficient remaining disk space (282430799872 B)
[2026-01-09 19:23:57] 2026-01-09 18:23:12,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:23:57] 2026-01-09 18:23:12,125 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:23:57] 2026-01-09 18:23:12,125 | INFO     | update_server=False
[2026-01-09 19:23:57] 2026-01-09 18:23:12,125 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:23:57] 2026-01-09 18:23:12,125 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:23:57] 2026-01-09 18:23:12,125 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:23:57] 2026-01-09 18:23:12,552 | INFO     | all job control threads have been joined
[2026-01-09 19:23:57] 2026-01-09 18:23:12,625 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 19:23:57] 2026-01-09 18:23:12,625 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 19:23:57] 2026-01-09 18:23:12,625 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:23:57] 2026-01-09 18:23:12,625 | INFO     | will abort loop
[2026-01-09 19:23:57] 2026-01-09 18:23:12,745 | INFO     | all data control threads have been joined
[2026-01-09 19:23:57] 2026-01-09 18:23:13,078 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:23:57] 2026-01-09 18:23:13,130 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:13,131 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:13,144 | INFO     | all payload control threads have been joined
[2026-01-09 19:23:57] 2026-01-09 18:23:13,557 | INFO     | [job] control thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:13,630 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:13,751 | INFO     | [data] control thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:13,775 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:14,112 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:14,149 | INFO     | [payload] control thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:14,222 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:14,546 | INFO     | [job] validate thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:14,546 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:14,590 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:14,594 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:15,084 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:16,131 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:22,743 | INFO     | job.realtimelogging is not enabled
[2026-01-09 19:23:57] 2026-01-09 18:23:23,749 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:23:57] 2026-01-09 18:23:42,720 | INFO     | PID=3452342 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 19:23:57] 2026-01-09 18:23:42,721 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:23:57] 2026-01-09 18:23:42,721 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:23:57] 2026-01-09 18:23:42,721 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:23:57] 2026-01-09 18:23:51,133 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:23:57] 2026-01-09 18:23:52,139 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140263851374400)>', '<ExcThread(monitor, started 140263230011136)>']
[2026-01-09 19:23:57] 2026-01-09 18:23:52,771 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:23:57] 2026-01-09 18:23:52,771 | INFO     | [monitor] control thread has ended
[2026-01-09 19:23:57] 2026-01-09 18:23:57,165 | INFO     | all workflow threads have been joined
[2026-01-09 19:23:57] 2026-01-09 18:23:57,165 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:23:57] 2026-01-09 18:23:57,166 | INFO     | traces error code: 0
[2026-01-09 19:23:57] 2026-01-09 18:23:57,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:23:57] 2026-01-09 18:23:57,216 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:23:57] 2026-01-09 18:23:57,219 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:23:57] 2026-01-09 18:23:57,221 [wrapper] pilotpid: 3452342
[2026-01-09 19:23:57] 2026-01-09 18:23:57,224 [wrapper] Pilot exit status: 0
[2026-01-09 19:23:57] 2026-01-09 18:23:57,231 [wrapper] pandaids: 6963156952
[2026-01-09 19:23:57] 2026-01-09 18:23:57,250 [wrapper] cleanup supervisor_pilot 3473270 3452343
[2026-01-09 19:23:57] 2026-01-09 18:23:57,252 [wrapper] Test setup, not cleaning
[2026-01-09 19:23:57] 2026-01-09 18:23:57,255 [wrapper] apfmon messages muted
[2026-01-09 19:23:57] 2026-01-09 18:23:57,257 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:23:57] 2026-01-09 18:23:57,260 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:23:57]  *** Error codes and diagnostics ***
[2026-01-09 19:23:57]     "exeErrorCode": 0,
[2026-01-09 19:23:57]     "exeErrorDiag": "",
[2026-01-09 19:23:57]     "pilotErrorCode": 0,
[2026-01-09 19:23:57]     "pilotErrorDiag": "",
[2026-01-09 19:23:57]  *** Listing of results directory ***
[2026-01-09 19:23:57] total 442328
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 19:23:57] -rwx------ 1 boinc boinc     36322 Jan  8 22:47 runpilot2-wrapper.sh
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:50 queuedata.json
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc       100 Jan  9 17:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:23:57] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 17:35 run_atlas
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc       105 Jan  9 17:35 job.xml
[2026-01-09 19:23:57] -rw-r--r-- 2 boinc boinc 227555741 Jan  9 17:35 EVNT.47898824._001219.pool.root.1
[2026-01-09 19:23:57] -rw-r--r-- 2 boinc boinc    592401 Jan  9 17:35 input.tar.gz
[2026-01-09 19:23:57] -rw-r--r-- 2 boinc boinc     15847 Jan  9 17:35 start_atlas.sh
[2026-01-09 19:23:57] drwxrwx--x 2 boinc boinc      4096 Jan  9 17:35 shared
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc         0 Jan  9 17:35 boinc_setup_complete
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc      6449 Jan  9 17:35 init_data.xml
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc         0 Jan  9 17:35 boinc_lockfile
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc      2520 Jan  9 17:35 pandaJob.out
[2026-01-09 19:23:57] -rw------- 1 boinc boinc    989356 Jan  9 17:35 agis_schedconf.cvmfs.json
[2026-01-09 19:23:57] -rw------- 1 boinc boinc   1516240 Jan  9 17:35 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:23:57] drwx------ 5 boinc boinc      4096 Jan  9 17:35 pilot3
[2026-01-09 19:23:57] -rw------- 1 boinc boinc 219067029 Jan  9 19:22 HITS.47898826._032081.pool.root.1
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc       529 Jan  9 19:22 boinc_task_state.xml
[2026-01-09 19:23:57] -rw------- 1 boinc boinc      1013 Jan  9 19:22 memory_monitor_summary.json
[2026-01-09 19:23:57] -rw------- 1 boinc boinc    271025 Jan  9 19:23 log.47898826._032081.job.log.tgz.1
[2026-01-09 19:23:57] -rw------- 1 boinc boinc      7753 Jan  9 19:23 heartbeat.json
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc      8192 Jan  9 19:23 boinc_mmap_file
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc        27 Jan  9 19:23 wrapper_checkpoint.txt
[2026-01-09 19:23:57] -rw------- 1 boinc boinc        95 Jan  9 19:23 pilot_heartbeat.json
[2026-01-09 19:23:57] -rw------- 1 boinc boinc      5010 Jan  9 19:23 pilotlog.txt
[2026-01-09 19:23:57] -rw------- 1 boinc boinc    933912 Jan  9 19:23 log.47898826._032081.job.log.1
[2026-01-09 19:23:57] -rw------- 1 boinc boinc       357 Jan  9 19:23 output.list
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc       620 Jan  9 19:23 runtime_log
[2026-01-09 19:23:57] -rw------- 1 boinc boinc   1228800 Jan  9 19:23 result.tar.gz
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc      8917 Jan  9 19:23 runtime_log.err
[2026-01-09 19:23:57] -rw------- 1 boinc boinc       662 Jan  9 19:23 8KuMDmM2Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9KgKDmkw3izm.diag
[2026-01-09 19:23:57] -rw-r--r-- 1 boinc boinc     10609 Jan  9 19:23 stderr.txt
[2026-01-09 19:23:57] HITS file was successfully produced:
[2026-01-09 19:23:57] -rw------- 1 boinc boinc 219067029 Jan  9 19:22 shared/HITS.pool.root.1
[2026-01-09 19:23:57]  *** Contents of shared directory: ***
[2026-01-09 19:23:57] total 437964
[2026-01-09 19:23:57] -rw-r--r-- 2 boinc boinc 227555741 Jan  9 17:35 ATLAS.root_0
[2026-01-09 19:23:57] -rw-r--r-- 2 boinc boinc    592401 Jan  9 17:35 input.tar.gz
[2026-01-09 19:23:57] -rw-r--r-- 2 boinc boinc     15847 Jan  9 17:35 start_atlas.sh
[2026-01-09 19:23:57] -rw------- 1 boinc boinc 219067029 Jan  9 19:22 HITS.pool.root.1
[2026-01-09 19:23:57] -rw------- 1 boinc boinc   1228800 Jan  9 19:23 result.tar.gz
19:23:58 (3448623): run_atlas exited; CPU time 18620.093443
19:23:58 (3448623): called boinc_finish(0)

</stderr_txt>
]]>

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