Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:04:31 (326938): wrapper (7.7.26015): starting
09:04:31 (326938): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 09:04:31] Arguments: --nthreads 4
[2026-01-09 09:04:31] Threads: 4
[2026-01-09 09:04:31] Checking for CVMFS
[2026-01-09 09:04:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:04:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:04:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:04:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:04:31] 2.9.2.0 3067 1110 82404 154936 3 57 20972858 36864001 0 130560 0 844159 99.991 38496 2706 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 09:04:31] CVMFS is ok
[2026-01-09 09:04:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 09:04:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 09:04:31] Further information can be found at the LHC@home message board.
[2026-01-09 09:04:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:04:31] Checking for apptainer binary...
[2026-01-09 09:04:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 09:04:31] Running /usr/bin/apptainer --version
[2026-01-09 09:04:31] apptainer version 1.4.1-1.1
[2026-01-09 09:04:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:04:31] thA383a
[2026-01-09 09:04:31] apptainer works
[2026-01-09 09:04:31] Set ATHENA_PROC_NUMBER=4
[2026-01-09 09:04:31] Set ATHENA_CORE_NUMBER=4
[2026-01-09 09:04:31] Starting ATLAS job with PandaID=6963157561
[2026-01-09 09:04:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 09:12:46]  *** The last 200 lines of the pilot log: ***
[2026-01-09 09:12:46] 2026-01-09 08:11:53,055 | INFO     | all job control threads have been joined
[2026-01-09 09:12:46] 2026-01-09 08:11:53,158 | INFO     | all payload control threads have been joined
[2026-01-09 09:12:46] 2026-01-09 08:11:53,460 | INFO     | all data control threads have been joined
[2026-01-09 09:12:46] 2026-01-09 08:11:53,534 | INFO     | [job] queue monitor thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:53,534 | INFO     | [job] retrieve thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:53,534 | INFO     | [job] job monitor thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:53,567 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:53,660 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:53,777 | INFO     | [payload] failed_post thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:54,059 | INFO     | [job] control thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:54,059 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:54,144 | INFO     | [data] copytool_in thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:54,163 | INFO     | [payload] control thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:54,465 | INFO     | [data] control thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:54,540 | INFO     | [payload] validate_post thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:54,642 | INFO     | [data] copytool_out thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:54,980 | INFO     | [job] validate thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:55,010 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:11:55,376 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 09:12:46] 2026-01-09 08:11:59,383 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 09:12:46] 2026-01-09 08:12:23,395 | INFO     | PID=330742 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 09:12:46] 2026-01-09 08:12:23,395 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 09:12:46] 2026-01-09 08:12:23,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 09:12:46] 2026-01-09 08:12:23,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 09:12:46] 2026-01-09 08:12:39,668 | INFO     | [monitor] cgroup control has ended
[2026-01-09 09:12:46] 2026-01-09 08:12:40,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140471424763712)>', '<ExcThread(monitor, started 140470051137280)>']
[2026-01-09 09:12:46] 2026-01-09 08:12:41,490 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 09:12:46] 2026-01-09 08:12:41,491 | INFO     | [monitor] control thread has ended
[2026-01-09 09:12:46] 2026-01-09 08:12:46,012 | INFO     | all workflow threads have been joined
[2026-01-09 09:12:46] 2026-01-09 08:12:46,012 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 09:12:46] 2026-01-09 08:12:46,013 | INFO     | traces error code: 0
[2026-01-09 09:12:46] 2026-01-09 08:12:46,013 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 09:12:46] 2026-01-09 08:12:46,089 [wrapper] ==== pilot stdout END ====
[2026-01-09 09:12:46] 2026-01-09 08:12:46,093 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 09:12:46] 2026-01-09 08:12:46,097 [wrapper] pilotpid: 330742
[2026-01-09 09:12:46] 2026-01-09 08:12:46,101 [wrapper] Pilot exit status: 0
[2026-01-09 09:12:46] 2026-01-09 08:12:46,113 [wrapper] pandaids: 6963157561
[2026-01-09 09:12:46] 2026-01-09 08:12:46,135 [wrapper] cleanup supervisor_pilot  330748 330743
[2026-01-09 09:12:46] 2026-01-09 08:12:46,139 [wrapper] Test setup, not cleaning
[2026-01-09 09:12:46] 2026-01-09 08:12:46,143 [wrapper] apfmon messages muted
[2026-01-09 09:12:46] 2026-01-09 08:12:46,147 [wrapper] ==== wrapper stdout END ====
[2026-01-09 09:12:46] 2026-01-09 08:12:46,151 [wrapper] ==== wrapper stderr END ====
[2026-01-09 09:12:46]  *** Error codes and diagnostics ***
[2026-01-09 09:12:46]     "exeErrorCode": 65,
[2026-01-09 09:12:46]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 7696.26 KB/s",
[2026-01-09 09:12:46]     "pilotErrorCode": 1305,
[2026-01-09 09:12:46]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2026-01-09 09:12:46]  *** Listing of results directory ***
[2026-01-09 09:12:46] total 223240
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:47 queuedata.json
[2026-01-09 09:12:46] -rwx------ 1 boinc boinc     36322 Jan  8 22:47 runpilot2-wrapper.sh
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc       100 Jan  9 09:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 09:12:46] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 09:04 run_atlas
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc       105 Jan  9 09:04 job.xml
[2026-01-09 09:12:46] -rw-r--r-- 2 boinc boinc 224174361 Jan  9 09:04 EVNT.47898824._001252.pool.root.1
[2026-01-09 09:12:46] drwxrwx--x 2 boinc boinc      4096 Jan  9 09:04 shared
[2026-01-09 09:12:46] -rw-r--r-- 2 boinc boinc    592399 Jan  9 09:04 input.tar.gz
[2026-01-09 09:12:46] -rw-r--r-- 2 boinc boinc     15847 Jan  9 09:04 start_atlas.sh
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc         0 Jan  9 09:04 boinc_setup_complete
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc      6377 Jan  9 09:04 init_data.xml
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc         0 Jan  9 09:04 boinc_lockfile
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc      2520 Jan  9 09:04 pandaJob.out
[2026-01-09 09:12:46] -rw------- 1 boinc boinc    989771 Jan  9 09:04 agis_schedconf.cvmfs.json
[2026-01-09 09:12:46] -rw------- 1 boinc boinc   1516240 Jan  9 09:04 agis_ddmendpoints.agis.ALL.json
[2026-01-09 09:12:46] drwx------ 5 boinc boinc      4096 Jan  9 09:04 pilot3
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc       526 Jan  9 09:09 boinc_task_state.xml
[2026-01-09 09:12:46] -rw------- 1 boinc boinc      1002 Jan  9 09:09 memory_monitor_summary.json
[2026-01-09 09:12:46] -rw------- 1 boinc boinc    143352 Jan  9 09:09 log.47898826._032422.job.log.tgz.1
[2026-01-09 09:12:46] -rw------- 1 boinc boinc        95 Jan  9 09:11 pilot_heartbeat.json
[2026-01-09 09:12:46] -rw------- 1 boinc boinc      9849 Jan  9 09:11 heartbeat.json
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc        24 Jan  9 09:12 wrapper_checkpoint.txt
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc      8192 Jan  9 09:12 boinc_mmap_file
[2026-01-09 09:12:46] -rw------- 1 boinc boinc      4751 Jan  9 09:12 pilotlog.txt
[2026-01-09 09:12:46] -rw------- 1 boinc boinc    118577 Jan  9 09:12 log.47898826._032422.job.log.1
[2026-01-09 09:12:46] -rw------- 1 boinc boinc       188 Jan  9 09:12 output.list
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc       620 Jan  9 09:12 runtime_log
[2026-01-09 09:12:46] -rw------- 1 boinc boinc    286720 Jan  9 09:12 result.tar.gz
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc      8749 Jan  9 09:12 runtime_log.err
[2026-01-09 09:12:46] -rw------- 1 boinc boinc       651 Jan  9 09:12 roQLDmO2Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmoYlKDmOjh6Nm.diag
[2026-01-09 09:12:46] -rw-r--r-- 1 boinc boinc      7222 Jan  9 09:12 stderr.txt
[2026-01-09 09:12:46] No HITS result produced
[2026-01-09 09:12:46]  *** Contents of shared directory: ***
[2026-01-09 09:12:46] total 219804
[2026-01-09 09:12:46] -rw-r--r-- 2 boinc boinc 224174361 Jan  9 09:04 ATLAS.root_0
[2026-01-09 09:12:46] -rw-r--r-- 2 boinc boinc    592399 Jan  9 09:04 input.tar.gz
[2026-01-09 09:12:46] -rw-r--r-- 2 boinc boinc     15847 Jan  9 09:04 start_atlas.sh
[2026-01-09 09:12:46] -rw------- 1 boinc boinc    286720 Jan  9 09:12 result.tar.gz
09:12:47 (326938): run_atlas exited; CPU time 173.596895
09:12:47 (326938): called boinc_finish(0)

</stderr_txt>
]]>

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