Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:44:19 (3632248): wrapper (7.7.26015): starting
19:44:19 (3632248): wrapper: running run_atlas (--nthreads 2)
[2026-01-09 19:44:19] Arguments: --nthreads 2
[2026-01-09 19:44:19] Threads: 2
[2026-01-09 19:44:19] Checking for CVMFS
[2026-01-09 19:44:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 19:44:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 19:44:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 19:44:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 19:44:19] 2.9.2.0 3288549 1461 56000 154953 2 12 19838284 36864000 0 130560 0 690546 99.985 54653 3746 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 19:44:19] CVMFS is ok
[2026-01-09 19:44:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 19:44:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 19:44:19] Further information can be found at the LHC@home message board.
[2026-01-09 19:44:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 19:44:19] Checking for apptainer binary...
[2026-01-09 19:44:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 19:44:19] Running /usr/bin/apptainer --version
[2026-01-09 19:44:19] apptainer version 1.4.1-1.1
[2026-01-09 19:44:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 19:44:19] thA369
[2026-01-09 19:44:19] apptainer works
[2026-01-09 19:44:19] Set ATHENA_PROC_NUMBER=2
[2026-01-09 19:44:19] Set ATHENA_CORE_NUMBER=2
[2026-01-09 19:44:20] Starting ATLAS job with PandaID=6963162303
[2026-01-09 19:44:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 22:48:14]  *** The last 200 lines of the pilot log: ***
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | job 6963162303 has completed (purged errors)
[2026-01-09 22:48:14] 2026-01-09 21:47:41,725 | INFO     | overall cleanup function is called
[2026-01-09 22:48:14] 2026-01-09 21:47:42,730 | INFO     | --- collectZombieJob: --- 10, [3642394]
[2026-01-09 22:48:14] 2026-01-09 21:47:42,731 | INFO     | zombie collector waiting for pid 3642394
[2026-01-09 22:48:14] 2026-01-09 21:47:42,731 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 22:48:14] 2026-01-09 21:47:42,731 | INFO     | collected zombie processes
[2026-01-09 22:48:14] 2026-01-09 21:47:42,731 | INFO     | will attempt to kill all subprocesses of pid=3642394
[2026-01-09 22:48:14] 2026-01-09 21:47:42,800 | INFO     | process IDs to be killed: [3642394] (in reverse order)
[2026-01-09 22:48:14] 2026-01-09 21:47:42,833 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 22:48:14] 2026-01-09 21:47:42,833 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 22:48:14] 2026-01-09 21:47:42,841 | INFO     | did not find any defunct processes belonging to 3642394
[2026-01-09 22:48:14] 2026-01-09 21:47:42,847 | INFO     | did not find any defunct processes belonging to 3642394
[2026-01-09 22:48:14] 2026-01-09 21:47:42,848 | INFO     | ready for new job
[2026-01-09 22:48:14] 2026-01-09 21:47:42,848 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 22:48:14] 2026-01-09 21:47:42,850 | INFO     | ***************************************
[2026-01-09 22:48:14] 2026-01-09 21:47:42,850 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 22:48:14] 2026-01-09 21:47:42,850 | INFO     | ***************************************
[2026-01-09 22:48:14] 2026-01-09 21:47:42,850 | INFO     | 
[2026-01-09 22:48:14] 2026-01-09 21:47:42,851 | INFO     | architecture information:
[2026-01-09 22:48:14] 2026-01-09 21:47:42,852 | INFO     | executing command: cat /etc/os-release
[2026-01-09 22:48:14] 2026-01-09 21:47:42,868 | INFO     | cat /etc/os-release:
[2026-01-09 22:48:14] NAME="CentOS Linux"
[2026-01-09 22:48:14] VERSION="7 (Core)"
[2026-01-09 22:48:14] ID="centos"
[2026-01-09 22:48:14] ID_LIKE="rhel fedora"
[2026-01-09 22:48:14] VERSION_ID="7"
[2026-01-09 22:48:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 22:48:14] ANSI_COLOR="0;31"
[2026-01-09 22:48:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 22:48:14] HOME_URL="https://www.centos.org/"
[2026-01-09 22:48:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 22:48:14] 
[2026-01-09 22:48:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 22:48:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 22:48:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 22:48:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 22:48:14] 
[2026-01-09 22:48:14] 2026-01-09 21:47:42,868 | INFO     | ***************************************
[2026-01-09 22:48:14] 2026-01-09 21:47:43,371 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 22:48:14] 2026-01-09 21:47:43,402 | INFO     | sufficient remaining disk space (340802928640 B)
[2026-01-09 22:48:14] 2026-01-09 21:47:43,403 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 22:48:14] 2026-01-09 21:47:43,403 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 22:48:14] 2026-01-09 21:47:43,403 | INFO     | update_server=False
[2026-01-09 22:48:14] 2026-01-09 21:47:43,403 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 22:48:14] 2026-01-09 21:47:43,404 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 22:48:14] 2026-01-09 21:47:43,404 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:48:14] 2026-01-09 21:47:43,405 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 22:48:14] 2026-01-09 21:47:43,460 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 22:48:14] 2026-01-09 21:47:43,461 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 22:48:14] 2026-01-09 21:47:43,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 22:48:14] 2026-01-09 21:47:43,461 | INFO     | will abort loop
[2026-01-09 22:48:14] 2026-01-09 21:47:43,610 | INFO     | all payload control threads have been joined
[2026-01-09 22:48:14] 2026-01-09 21:47:43,727 | INFO     | all data control threads have been joined
[2026-01-09 22:48:14] 2026-01-09 21:47:44,312 | INFO     | all job control threads have been joined
[2026-01-09 22:48:14] 2026-01-09 21:47:44,409 | INFO     | [job] retrieve thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:44,410 | INFO     | [job] queue monitor thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:44,467 | INFO     | [job] job monitor thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:44,616 | INFO     | [payload] control thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:44,663 | INFO     | [payload] validate_post thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:44,732 | INFO     | [data] control thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:44,850 | INFO     | [payload] failed_post thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:45,263 | INFO     | [data] copytool_in thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:45,317 | INFO     | [job] control thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:45,411 | INFO     | [data] copytool_out thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:45,541 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:45,543 | INFO     | [job] validate thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:45,544 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:45,556 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:47,409 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:50,221 | INFO     | [monitor] cgroup control has ended
[2026-01-09 22:48:14] 2026-01-09 21:47:54,328 | INFO     | job.realtimelogging is not enabled
[2026-01-09 22:48:14] 2026-01-09 21:47:55,329 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 22:48:14] 2026-01-09 21:47:55,433 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140012429608768)>', '<ExcThread(monitor, started 140011924068096)>']
[2026-01-09 22:48:14] 2026-01-09 21:48:00,448 | INFO     | all workflow threads have been joined
[2026-01-09 22:48:14] 2026-01-09 21:48:00,449 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 22:48:14] 2026-01-09 21:48:00,450 | INFO     | traces error code: 0
[2026-01-09 22:48:14] 2026-01-09 21:48:00,450 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 22:48:14] 2026-01-09 21:48:14,055 | INFO     | PID=3635960 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 22:48:14] 2026-01-09 21:48:14,055 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 22:48:14] 2026-01-09 21:48:14,055 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 22:48:14] 2026-01-09 21:48:14,055 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 22:48:14] 2026-01-09 21:48:14,055 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 22:48:14] 2026-01-09 21:48:14,055 | INFO     | [monitor] control thread has ended
[2026-01-09 22:48:14] 2026-01-09 21:48:14,097 [wrapper] ==== pilot stdout END ====
[2026-01-09 22:48:14] 2026-01-09 21:48:14,100 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 22:48:14] 2026-01-09 21:48:14,103 [wrapper] pilotpid: 3635960
[2026-01-09 22:48:14] 2026-01-09 21:48:14,105 [wrapper] Pilot exit status: 0
[2026-01-09 22:48:14] 2026-01-09 21:48:14,111 [wrapper] pandaids: 6963162303
[2026-01-09 22:48:14] 2026-01-09 21:48:14,129 [wrapper] cleanup supervisor_pilot 3668739 3635961
[2026-01-09 22:48:14] 2026-01-09 21:48:14,131 [wrapper] Test setup, not cleaning
[2026-01-09 22:48:14] 2026-01-09 21:48:14,133 [wrapper] apfmon messages muted
[2026-01-09 22:48:14] 2026-01-09 21:48:14,135 [wrapper] ==== wrapper stdout END ====
[2026-01-09 22:48:14] 2026-01-09 21:48:14,137 [wrapper] ==== wrapper stderr END ====
[2026-01-09 22:48:14]  *** Error codes and diagnostics ***
[2026-01-09 22:48:14]     "exeErrorCode": 0,
[2026-01-09 22:48:14]     "exeErrorDiag": "",
[2026-01-09 22:48:14]     "pilotErrorCode": 0,
[2026-01-09 22:48:14]     "pilotErrorDiag": "",
[2026-01-09 22:48:14]  *** Listing of results directory ***
[2026-01-09 22:48:14] total 439568
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 22:48:14] -rwx------ 1 boinc boinc     36322 Jan  8 22:46 runpilot2-wrapper.sh
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:47 queuedata.json
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc       100 Jan  9 19:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 22:48:14] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 19:44 run_atlas
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc       105 Jan  9 19:44 job.xml
[2026-01-09 22:48:14] -rw-r--r-- 2 boinc boinc 226772031 Jan  9 19:44 EVNT.47898824._001293.pool.root.1
[2026-01-09 22:48:14] drwxrwx--x 2 boinc boinc      4096 Jan  9 19:44 shared
[2026-01-09 22:48:14] -rw-r--r-- 2 boinc boinc    592392 Jan  9 19:44 input.tar.gz
[2026-01-09 22:48:14] -rw-r--r-- 2 boinc boinc     15847 Jan  9 19:44 start_atlas.sh
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc         0 Jan  9 19:44 boinc_setup_complete
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc      6205 Jan  9 19:44 init_data.xml
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc         0 Jan  9 19:44 boinc_lockfile
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc      2516 Jan  9 19:44 pandaJob.out
[2026-01-09 22:48:14] -rw------- 1 boinc boinc    989372 Jan  9 19:44 agis_schedconf.cvmfs.json
[2026-01-09 22:48:14] drwx------ 5 boinc boinc      4096 Jan  9 19:44 pilot3
[2026-01-09 22:48:14] -rw------- 1 boinc boinc 215714889 Jan  9 22:47 HITS.47898826._033924.pool.root.1
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc       530 Jan  9 22:47 boinc_task_state.xml
[2026-01-09 22:48:14] -rw------- 1 boinc boinc      1017 Jan  9 22:47 memory_monitor_summary.json
[2026-01-09 22:48:14] -rw------- 1 boinc boinc   1516240 Jan  9 22:47 agis_ddmendpoints.agis.ALL.json
[2026-01-09 22:48:14] -rw------- 1 boinc boinc    309113 Jan  9 22:47 log.47898826._033924.job.log.tgz.1
[2026-01-09 22:48:14] -rw------- 1 boinc boinc      7754 Jan  9 22:47 heartbeat.json
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc      8192 Jan  9 22:48 boinc_mmap_file
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc        28 Jan  9 22:48 wrapper_checkpoint.txt
[2026-01-09 22:48:14] -rw------- 1 boinc boinc       747 Jan  9 22:48 pilotlog.txt
[2026-01-09 22:48:14] -rw------- 1 boinc boinc        95 Jan  9 22:48 pilot_heartbeat.json
[2026-01-09 22:48:14] -rw------- 1 boinc boinc   1555226 Jan  9 22:48 log.47898826._033924.job.log.1
[2026-01-09 22:48:14] -rw------- 1 boinc boinc       357 Jan  9 22:48 output.list
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc       620 Jan  9 22:48 runtime_log
[2026-01-09 22:48:14] -rw------- 1 boinc boinc   1884160 Jan  9 22:48 result.tar.gz
[2026-01-09 22:48:14] -rw------- 1 boinc boinc       662 Jan  9 22:48 upaKDmT1Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhXlKDmU0CBtm.diag
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc      8898 Jan  9 22:48 runtime_log.err
[2026-01-09 22:48:14] -rw-r--r-- 1 boinc boinc     12357 Jan  9 22:48 stderr.txt
[2026-01-09 22:48:14] HITS file was successfully produced:
[2026-01-09 22:48:14] -rw------- 1 boinc boinc 215714889 Jan  9 22:47 shared/HITS.pool.root.1
[2026-01-09 22:48:14]  *** Contents of shared directory: ***
[2026-01-09 22:48:14] total 434564
[2026-01-09 22:48:14] -rw-r--r-- 2 boinc boinc 226772031 Jan  9 19:44 ATLAS.root_0
[2026-01-09 22:48:14] -rw-r--r-- 2 boinc boinc    592392 Jan  9 19:44 input.tar.gz
[2026-01-09 22:48:14] -rw-r--r-- 2 boinc boinc     15847 Jan  9 19:44 start_atlas.sh
[2026-01-09 22:48:14] -rw------- 1 boinc boinc 215714889 Jan  9 22:47 HITS.pool.root.1
[2026-01-09 22:48:14] -rw------- 1 boinc boinc   1884160 Jan  9 22:48 result.tar.gz
22:48:15 (3632248): run_atlas exited; CPU time 21605.040680
22:48:15 (3632248): called boinc_finish(0)

</stderr_txt>
]]>

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