Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:03:20 (13031): wrapper (7.7.26015): starting
09:03:20 (13031): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 09:03:20] Arguments: --nthreads 8
[2026-01-09 09:03:20] Threads: 8
[2026-01-09 09:03:20] Checking for CVMFS
[2026-01-09 09:03:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 09:03:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 09:03:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 09:03:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 09:03:21] 2.11.2.0 20308 35149 120452 154936 3 57 18349346 25165824 0 130560 0 16877682 99.820 10737787 2593 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 09:03:21] CVMFS is ok
[2026-01-09 09:03:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 09:03:21] Checking for apptainer binary...
[2026-01-09 09:03:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 09:03:21] Running /usr/bin/apptainer --version
[2026-01-09 09:03:21] apptainer version 1.3.2-1.el7
[2026-01-09 09:03:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 09:03:22] cg-vwn476.simple-grid.lan
[2026-01-09 09:03:22] apptainer works
[2026-01-09 09:03:22] Set ATHENA_PROC_NUMBER=8
[2026-01-09 09:03:22] Set ATHENA_CORE_NUMBER=8
[2026-01-09 09:03:22] Starting ATLAS job with PandaID=6963162063
[2026-01-09 09:03:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 11:33:59]  *** The last 200 lines of the pilot log: ***
[2026-01-09 11:33:59] 2026-01-09 10:33:10,930 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 11:33:59] 2026-01-09 10:33:10,932 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 11:33:59] 2026-01-09 10:33:10,933 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6963162063/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 11:33:59] 2026-01-09 10:33:10,934 | INFO     | extracted standard info from prmon json
[2026-01-09 11:33:59] 2026-01-09 10:33:10,934 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 11:33:59] 2026-01-09 10:33:10,934 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 11:33:59] 2026-01-09 10:33:10,935 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 11:33:59] 2026-01-09 10:33:10,935 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 11:33:59] 2026-01-09 10:33:10,938 | INFO     | fitting pss+swap vs Time
[2026-01-09 11:33:59] 2026-01-09 10:33:10,939 | INFO     | sum of square deviations: 984941258.0
[2026-01-09 11:33:59] 2026-01-09 10:33:10,940 | INFO     | sum of deviations: 14212657119.000004
[2026-01-09 11:33:59] 2026-01-09 10:33:10,940 | INFO     | mean x: 1767950305.0
[2026-01-09 11:33:59] 2026-01-09 10:33:10,940 | INFO     | mean y: 2455156.1156462585
[2026-01-09 11:33:59] 2026-01-09 10:33:10,940 | INFO     | intersect: -25508986550.99627
[2026-01-09 11:33:59] 2026-01-09 10:33:10,940 | INFO     | chi2: 2.1810962491676507
[2026-01-09 11:33:59] 2026-01-09 10:33:10,941 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 11:33:59] 2026-01-09 10:33:10,941 | INFO     | sum of deviations: 23097699593.0
[2026-01-09 11:33:59] 2026-01-09 10:33:10,942 | INFO     | mean x: 1767950152.5
[2026-01-09 11:33:59] 2026-01-09 10:33:10,942 | INFO     | mean y: 2468688.971830986
[2026-01-09 11:33:59] 2026-01-09 10:33:10,942 | INFO     | intersect: -45993188243.91722
[2026-01-09 11:33:59] 2026-01-09 10:33:10,942 | INFO     | chi2: 1.4187243249486923
[2026-01-09 11:33:59] 2026-01-09 10:33:10,942 | INFO     | current chi2=1.4187243249486923 (change=34.953612180567205 %)
[2026-01-09 11:33:59] 2026-01-09 10:33:10,943 | INFO     | sum of square deviations: 797291228.0
[2026-01-09 11:33:59] 2026-01-09 10:33:10,943 | INFO     | sum of deviations: 22200748333.999992
[2026-01-09 11:33:59] 2026-01-09 10:33:10,944 | INFO     | mean x: 1767950000.0
[2026-01-09 11:33:59] 2026-01-09 10:33:10,944 | INFO     | mean y: 2467177.3576642335
[2026-01-09 11:33:59] 2026-01-09 10:33:10,944 | INFO     | intersect: -49226486608.51703
[2026-01-09 11:33:59] 2026-01-09 10:33:10,944 | INFO     | chi2: 1.4198564708178392
[2026-01-09 11:33:59] 2026-01-09 10:33:10,944 | INFO     | current chi2=1.4198564708178392 (change=-0.07980027192300647 %)
[2026-01-09 11:33:59] 2026-01-09 10:33:10,944 | INFO     | right removable region: 136
[2026-01-09 11:33:59] 2026-01-09 10:33:10,945 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 11:33:59] 2026-01-09 10:33:10,946 | INFO     | sum of deviations: -6674889833.5
[2026-01-09 11:33:59] 2026-01-09 10:33:10,946 | INFO     | mean x: 1767950457.5
[2026-01-09 11:33:59] 2026-01-09 10:33:10,946 | INFO     | mean y: 2487399.3591549294
[2026-01-09 11:33:59] 2026-01-09 10:33:10,946 | INFO     | intersect: 13294546834.782581
[2026-01-09 11:33:59] 2026-01-09 10:33:10,946 | INFO     | chi2: 0.8077361223726566
[2026-01-09 11:33:59] 2026-01-09 10:33:10,946 | INFO     | current chi2=0.8077361223726566 (change=62.966507201096476 %)
[2026-01-09 11:33:59] 2026-01-09 10:33:10,947 | INFO     | sum of square deviations: 797291228.0
[2026-01-09 11:33:59] 2026-01-09 10:33:10,948 | INFO     | sum of deviations: -5731967236.000001
[2026-01-09 11:33:59] 2026-01-09 10:33:10,948 | INFO     | mean x: 1767950610.0
[2026-01-09 11:33:59] 2026-01-09 10:33:10,948 | INFO     | mean y: 2485719.6277372264
[2026-01-09 11:33:59] 2026-01-09 10:33:10,948 | INFO     | intersect: 12712816167.89678
[2026-01-09 11:33:59] 2026-01-09 10:33:10,948 | INFO     | chi2: 0.7911604736620677
[2026-01-09 11:33:59] 2026-01-09 10:33:10,948 | INFO     | current chi2=0.7911604736620677 (change=2.0521118532992375 %)
[2026-01-09 11:33:59] 2026-01-09 10:33:10,948 | INFO     | left removable region: 20
[2026-01-09 11:33:59] 2026-01-09 10:33:10,949 | INFO     | sum of square deviations: 483971865.0
[2026-01-09 11:33:59] 2026-01-09 10:33:10,949 | INFO     | sum of deviations: 1672454934.0000002
[2026-01-09 11:33:59] 2026-01-09 10:33:10,950 | INFO     | mean x: 1767950579.5
[2026-01-09 11:33:59] 2026-01-09 10:33:10,950 | INFO     | mean y: 2503983.206896552
[2026-01-09 11:33:59] 2026-01-09 10:33:10,950 | INFO     | intersect: -6106978578.869175
[2026-01-09 11:33:59] 2026-01-09 10:33:10,950 | INFO     | chi2: 0.00020630916543974579
[2026-01-09 11:33:59] 2026-01-09 10:33:10,950 | INFO     | current memory leak: 3.46 B/s (using 116 data points, chi2=0.00)
[2026-01-09 11:33:59] 2026-01-09 10:33:10,951 | INFO     | could have reported an average CPU frequency of 2249 MHz (8 samples)
[2026-01-09 11:33:59] 2026-01-09 10:33:10,951 | INFO     | ..............................
[2026-01-09 11:33:59] 2026-01-09 10:33:10,951 | INFO     | . Timing measurements:
[2026-01-09 11:33:59] 2026-01-09 10:33:10,951 | INFO     | . get job = 0 s
[2026-01-09 11:33:59] 2026-01-09 10:33:10,951 | INFO     | . initial setup = 2 s
[2026-01-09 11:33:59] 2026-01-09 10:33:10,951 | INFO     | . payload setup = 7 s
[2026-01-09 11:33:59] 2026-01-09 10:33:10,951 | INFO     | . stage-in = 0 s
[2026-01-09 11:33:59] 2026-01-09 10:33:10,952 | INFO     | . payload execution = 8932 s
[2026-01-09 11:33:59] 2026-01-09 10:33:10,952 | INFO     | . stage-out = 1 s
[2026-01-09 11:33:59] 2026-01-09 10:33:10,952 | INFO     | . log creation = 0 s
[2026-01-09 11:33:59] 2026-01-09 10:33:10,952 | INFO     | ..............................
[2026-01-09 11:33:59] 2026-01-09 10:33:11,372 | INFO     | 
[2026-01-09 11:33:59] 2026-01-09 10:33:11,373 | INFO     | job summary report
[2026-01-09 11:33:59] 2026-01-09 10:33:11,373 | INFO     | --------------------------------------------------
[2026-01-09 11:33:59] 2026-01-09 10:33:11,373 | INFO     | PanDA job id: 6963162063
[2026-01-09 11:33:59] 2026-01-09 10:33:11,373 | INFO     | task id: 47898826
[2026-01-09 11:33:59] 2026-01-09 10:33:11,373 | INFO     | errors: (none)
[2026-01-09 11:33:59] 2026-01-09 10:33:11,373 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 11:33:59] 2026-01-09 10:33:11,373 | INFO     | pilot state: finished 
[2026-01-09 11:33:59] 2026-01-09 10:33:11,373 | INFO     | transexitcode: 0
[2026-01-09 11:33:59] 2026-01-09 10:33:11,373 | INFO     | exeerrorcode: 0
[2026-01-09 11:33:59] 2026-01-09 10:33:11,373 | INFO     | exeerrordiag: 
[2026-01-09 11:33:59] 2026-01-09 10:33:11,374 | INFO     | exitcode: 0
[2026-01-09 11:33:59] 2026-01-09 10:33:11,374 | INFO     | exitmsg: OK
[2026-01-09 11:33:59] 2026-01-09 10:33:11,374 | INFO     | cpuconsumptiontime: 66743 s
[2026-01-09 11:33:59] 2026-01-09 10:33:11,374 | INFO     | nevents: 400
[2026-01-09 11:33:59] 2026-01-09 10:33:11,374 | INFO     | neventsw: 0
[2026-01-09 11:33:59] 2026-01-09 10:33:11,374 | INFO     | pid: 23215
[2026-01-09 11:33:59] 2026-01-09 10:33:11,374 | INFO     | pgrp: 23215
[2026-01-09 11:33:59] 2026-01-09 10:33:11,374 | INFO     | corecount: 8
[2026-01-09 11:33:59] 2026-01-09 10:33:11,374 | INFO     | event service: False
[2026-01-09 11:33:59] 2026-01-09 10:33:11,374 | INFO     | sizes: {0: 2283971, 6: 2284233, 11: 2284261, 8943: 2312057, 8944: 2321057, 8948: 2321113, 8955: 2321435}
[2026-01-09 11:33:59] 2026-01-09 10:33:11,375 | INFO     | --------------------------------------------------
[2026-01-09 11:33:59] 2026-01-09 10:33:11,375 | INFO     | 
[2026-01-09 11:33:59] 2026-01-09 10:33:11,375 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-09 11:33:59] 2026-01-09 10:33:11,404 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,404 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,404 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,404 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,405 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,405 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,405 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,405 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,405 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,405 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,405 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,405 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,405 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,406 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,406 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 11:33:59] 2026-01-09 10:33:11,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,406 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 11:33:59] 2026-01-09 10:33:11,406 | INFO     | job 6963162063 has completed (purged errors)
[2026-01-09 11:33:59] 2026-01-09 10:33:11,407 | INFO     | overall cleanup function is called
[2026-01-09 11:33:59] 2026-01-09 10:33:11,720 | INFO     | PID=16751 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 11:33:59] 2026-01-09 10:33:12,415 | INFO     | --- collectZombieJob: --- 10, [23215]
[2026-01-09 11:33:59] 2026-01-09 10:33:12,415 | INFO     | zombie collector waiting for pid 23215
[2026-01-09 11:33:59] 2026-01-09 10:33:12,415 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 11:33:59] 2026-01-09 10:33:12,415 | INFO     | collected zombie processes
[2026-01-09 11:33:59] 2026-01-09 10:33:12,415 | INFO     | will attempt to kill all subprocesses of pid=23215
[2026-01-09 11:33:59] 2026-01-09 10:33:12,474 | INFO     | process IDs to be killed: [23215] (in reverse order)
[2026-01-09 11:33:59] 2026-01-09 10:33:12,532 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 11:33:59] 2026-01-09 10:33:12,532 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 11:33:59] 2026-01-09 10:33:12,534 | INFO     | did not find any defunct processes belonging to 23215
[2026-01-09 11:33:59] 2026-01-09 10:33:12,535 | INFO     | did not find any defunct processes belonging to 23215
[2026-01-09 11:33:59] 2026-01-09 10:33:12,536 | INFO     | ready for new job
[2026-01-09 11:33:59] 2026-01-09 10:33:12,536 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 11:33:59] 2026-01-09 10:33:12,538 | INFO     | ***************************************
[2026-01-09 11:33:59] 2026-01-09 10:33:12,538 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 11:33:59] 2026-01-09 10:33:12,538 | INFO     | ***************************************
[2026-01-09 11:33:59] 2026-01-09 10:33:12,538 | INFO     | 
[2026-01-09 11:33:59] 2026-01-09 10:33:12,539 | INFO     | pilot is running in a VM
[2026-01-09 11:33:59] 2026-01-09 10:33:12,539 | INFO     | architecture information:
[2026-01-09 11:33:59] 2026-01-09 10:33:12,539 | INFO     | executing command: cat /etc/os-release
[2026-01-09 11:33:59] 2026-01-09 10:33:12,557 | INFO     | cat /etc/os-release:
[2026-01-09 11:33:59] NAME="CentOS Linux"
[2026-01-09 11:33:59] VERSION="7 (Core)"
[2026-01-09 11:33:59] ID="centos"
[2026-01-09 11:33:59] ID_LIKE="rhel fedora"
[2026-01-09 11:33:59] VERSION_ID="7"
[2026-01-09 11:33:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 11:33:59] ANSI_COLOR="0;31"
[2026-01-09 11:33:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 11:33:59] HOME_URL="https://www.centos.org/"
[2026-01-09 11:33:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 11:33:59] 
[2026-01-09 11:33:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 11:33:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 11:33:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 11:33:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 11:33:59] 
[2026-01-09 11:33:59] 2026-01-09 10:33:12,558 | INFO     | ***************************************
[2026-01-09 11:33:59] 2026-01-09 10:33:13,061 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-09 11:33:59] 2026-01-09 10:33:13,088 | INFO     | sufficient remaining disk space (498054725632 B)
[2026-01-09 11:33:59] 2026-01-09 10:33:13,089 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 11:33:59] 2026-01-09 10:33:13,089 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 11:33:59] 2026-01-09 10:33:13,089 | INFO     | update_server=False
[2026-01-09 11:33:59] 2026-01-09 10:33:13,089 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 11:33:59] 2026-01-09 10:33:13,089 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:33:59] 2026-01-09 10:33:13,090 | INFO     | aborting loop
[2026-01-09 11:33:59] 2026-01-09 10:33:13,247 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 11:33:59] 2026-01-09 10:33:13,683 | INFO     | all payload control threads have been joined
[2026-01-09 11:33:59] 2026-01-09 10:33:13,779 | INFO     | all data control threads have been joined
[2026-01-09 11:33:59] 2026-01-09 10:33:14,003 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 11:33:59] 2026-01-09 10:33:14,095 | INFO     | [job] retrieve thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:14,095 | INFO     | [job] job monitor thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:14,243 | INFO     | [payload] failed_post thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:14,255 | INFO     | [job] validate thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:14,287 | INFO     | all job control threads have been joined
[2026-01-09 11:33:59] 2026-01-09 10:33:14,348 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:14,526 | INFO     | [payload] validate_post thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:14,543 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:14,689 | INFO     | [payload] control thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:14,784 | INFO     | [data] control thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:14,884 | INFO     | [data] copytool_in thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:15,026 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:15,253 | INFO     | [data] copytool_out thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:15,293 | INFO     | [job] control thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:15,538 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:16,072 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:33:59] 2026-01-09 10:33:17,077 | INFO     | [job] queue monitor thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:18,009 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 11:33:59] 2026-01-09 10:33:43,801 | INFO     | PID=16751 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 11:33:59] 2026-01-09 10:33:43,802 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 11:33:59] 2026-01-09 10:33:43,802 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 11:33:59] 2026-01-09 10:33:43,802 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 11:33:59] 2026-01-09 10:33:45,533 [wrapper] supervise_pilot (15 min periods counter: 11)
[2026-01-09 11:33:59] 2026-01-09 10:33:52,433 | INFO     | [monitor] cgroup control has ended
[2026-01-09 11:33:59] 2026-01-09 10:33:54,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140114206521152)>', '<ExcThread(monitor, started 140113736607488)>']
[2026-01-09 11:33:59] 2026-01-09 10:33:54,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 11:33:59] 2026-01-09 10:33:54,856 | INFO     | [monitor] control thread has ended
[2026-01-09 11:33:59] 2026-01-09 10:33:59,526 | INFO     | all workflow threads have been joined
[2026-01-09 11:33:59] 2026-01-09 10:33:59,526 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 11:33:59] 2026-01-09 10:33:59,526 | INFO     | traces error code: 0
[2026-01-09 11:33:59] 2026-01-09 10:33:59,527 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 11:33:59] 2026-01-09 10:33:59,665 [wrapper] ==== pilot stdout END ====
[2026-01-09 11:33:59] 2026-01-09 10:33:59,668 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 11:33:59] 2026-01-09 10:33:59,674 [wrapper] pilotpid: 16751
[2026-01-09 11:33:59] 2026-01-09 10:33:59,685 [wrapper] Pilot exit status: 0
[2026-01-09 11:33:59] 2026-01-09 10:33:59,703 [wrapper] pandaids: 6963162063
[2026-01-09 11:33:59] 2026-01-09 10:33:59,739 [wrapper] cleanup supervisor_pilot  9699 16752
[2026-01-09 11:33:59] 2026-01-09 10:33:59,747 [wrapper] Test setup, not cleaning
[2026-01-09 11:33:59] 2026-01-09 10:33:59,752 [wrapper] apfmon messages muted
[2026-01-09 11:33:59] 2026-01-09 10:33:59,755 [wrapper] ==== wrapper stdout END ====
[2026-01-09 11:33:59] 2026-01-09 10:33:59,759 [wrapper] ==== wrapper stderr END ====
[2026-01-09 11:33:59]  *** Error codes and diagnostics ***
[2026-01-09 11:33:59]     "exeErrorCode": 0,
[2026-01-09 11:33:59]     "exeErrorDiag": "",
[2026-01-09 11:33:59]     "pilotErrorCode": 0,
[2026-01-09 11:33:59]     "pilotErrorDiag": "",
[2026-01-09 11:33:59]  *** Listing of results directory ***
[2026-01-09 11:33:59] total 440484
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 11:33:59] -rwx------. 1 boinc boinc     36322 Jan  8 22:46 runpilot2-wrapper.sh
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc      5112 Jan  8 22:47 queuedata.json
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc       100 Jan  9 09:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 11:33:59] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 09:03 run_atlas
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc       105 Jan  9 09:03 job.xml
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc      6391 Jan  9 09:03 init_data.xml
[2026-01-09 11:33:59] -rw-r--r--. 2 boinc boinc 223845866 Jan  9 09:03 EVNT.47898824._001236.pool.root.1
[2026-01-09 11:33:59] -rw-r--r--. 2 boinc boinc     15847 Jan  9 09:03 start_atlas.sh
[2026-01-09 11:33:59] drwxrwx--x. 2 boinc boinc        68 Jan  9 09:03 shared
[2026-01-09 11:33:59] -rw-r--r--. 2 boinc boinc    592400 Jan  9 09:03 input.tar.gz
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc         0 Jan  9 09:03 boinc_lockfile
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc      2519 Jan  9 09:03 pandaJob.out
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc    989771 Jan  9 09:03 agis_schedconf.cvmfs.json
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc   1516240 Jan  9 09:03 agis_ddmendpoints.agis.ALL.json
[2026-01-09 11:33:59] drwx------. 5 boinc boinc      4096 Jan  9 09:03 pilot3
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc 220122288 Jan  9 11:32 HITS.47898826._033690.pool.root.1
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc       529 Jan  9 11:32 boinc_task_state.xml
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc      1016 Jan  9 11:32 memory_monitor_summary.json
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc    388225 Jan  9 11:32 log.47898826._033690.job.log.tgz.1
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc      7766 Jan  9 11:33 heartbeat.json
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc      8192 Jan  9 11:33 boinc_mmap_file
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc        27 Jan  9 11:33 wrapper_checkpoint.txt
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc        95 Jan  9 11:33 pilot_heartbeat.json
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc      4810 Jan  9 11:33 pilotlog.txt
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc   1207488 Jan  9 11:33 log.47898826._033690.job.log.1
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc       357 Jan  9 11:33 output.list
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc       620 Jan  9 11:33 runtime_log
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc   1617920 Jan  9 11:33 result.tar.gz
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc      8832 Jan  9 11:33 runtime_log.err
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc       652 Jan  9 11:33 CSjNDmS1Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvWlKDmA5rt1m.diag
[2026-01-09 11:33:59] -rw-r--r--. 1 boinc boinc     20823 Jan  9 11:33 stderr.txt
[2026-01-09 11:33:59] HITS file was successfully produced:
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc 220122288 Jan  9 11:32 shared/HITS.pool.root.1
[2026-01-09 11:33:59]  *** Contents of shared directory: ***
[2026-01-09 11:33:59] total 435740
[2026-01-09 11:33:59] -rw-r--r--. 2 boinc boinc 223845866 Jan  9 09:03 ATLAS.root_0
[2026-01-09 11:33:59] -rw-r--r--. 2 boinc boinc     15847 Jan  9 09:03 start_atlas.sh
[2026-01-09 11:33:59] -rw-r--r--. 2 boinc boinc    592400 Jan  9 09:03 input.tar.gz
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc 220122288 Jan  9 11:32 HITS.pool.root.1
[2026-01-09 11:33:59] -rw-------. 1 boinc boinc   1617920 Jan  9 11:33 result.tar.gz
11:34:01 (13031): run_atlas exited; CPU time 66798.615480
11:34:01 (13031): called boinc_finish(0)

</stderr_txt>
]]>

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