Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:39:06 (967344): wrapper (7.7.26015): starting
23:39:06 (967344): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 23:39:06] Arguments: --nthreads 8
[2026-01-08 23:39:06] Threads: 8
[2026-01-08 23:39:06] Checking for CVMFS
[2026-01-08 23:39:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 23:39:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 23:39:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 23:39:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 23:39:07] 2.13.3.0 11754 92895 234504 154931 0 538 17125061 32935936 21955 16776704 0 482898615 99.518 633572138 17613 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 23:39:07] CVMFS is ok
[2026-01-08 23:39:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 23:39:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 23:39:07] Further information can be found at the LHC@home message board.
[2026-01-08 23:39:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 23:39:07] Checking for apptainer binary...
[2026-01-08 23:39:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 23:39:07] Running /usr/bin/apptainer --version
[2026-01-08 23:39:07] apptainer version 1.4.5-2.el9
[2026-01-08 23:39:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 23:39:07] c7-2-38.aglt2.org
[2026-01-08 23:39:07] apptainer works
[2026-01-08 23:39:07] Set ATHENA_PROC_NUMBER=8
[2026-01-08 23:39:07] Set ATHENA_CORE_NUMBER=8
[2026-01-08 23:39:07] Starting ATLAS job with PandaID=6963147650
[2026-01-08 23:39:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 07:53:49]  *** The last 200 lines of the pilot log: ***
[2026-01-09 07:53:49] 2026-01-09 12:53:10,201 | INFO     | time since job start (29618s) is within the limit (349056.0s)
[2026-01-09 07:53:49] 2026-01-09 12:53:12,214 | INFO     | time since job start (29620s) is within the limit (349056.0s)
[2026-01-09 07:53:49] 2026-01-09 12:53:12,330 | INFO     | monitor loop #1846: job 0:6963147650 is in state 'finished'
[2026-01-09 07:53:49] 2026-01-09 12:53:12,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 07:53:49] 2026-01-09 12:53:14,221 | INFO     | time since job start (29622s) is within the limit (349056.0s)
[2026-01-09 07:53:49] 2026-01-09 12:53:14,846 | INFO     | monitor loop #1847: job 0:6963147650 is in state 'finished'
[2026-01-09 07:53:49] 2026-01-09 12:53:14,846 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 07:53:49] 2026-01-09 12:53:15,561 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 07:53:49] 2026-01-09 12:53:15,599 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3235.7547395833335
[2026-01-09 07:53:49] 2026-01-09 12:53:15,689 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963147650/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 07:53:49] 2026-01-09 12:53:15,710 | INFO     | extracted standard info from prmon json
[2026-01-09 07:53:49] 2026-01-09 12:53:15,710 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 07:53:49] 2026-01-09 12:53:15,710 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 07:53:49] 2026-01-09 12:53:15,710 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 07:53:49] 2026-01-09 12:53:15,710 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 07:53:49] 2026-01-09 12:53:15,739 | INFO     | fitting pss+swap vs Time
[2026-01-09 07:53:49] 2026-01-09 12:53:15,761 | INFO     | sum of square deviations: 35375819833.63707
[2026-01-09 07:53:49] 2026-01-09 12:53:15,788 | INFO     | sum of deviations: 147913528483.1733
[2026-01-09 07:53:49] 2026-01-09 12:53:15,789 | INFO     | mean x: 1767948392.0948453
[2026-01-09 07:53:49] 2026-01-09 12:53:15,789 | INFO     | mean y: 2485842.9092783504
[2026-01-09 07:53:49] 2026-01-09 12:53:15,789 | INFO     | intersect: -7389667500.269244
[2026-01-09 07:53:49] 2026-01-09 12:53:15,789 | INFO     | chi2: 3.0810955896978687
[2026-01-09 07:53:49] 2026-01-09 12:53:15,790 | INFO     | sum of square deviations: 34292985653.591614
[2026-01-09 07:53:49] 2026-01-09 12:53:15,794 | INFO     | sum of deviations: 176626791341.1376
[2026-01-09 07:53:49] 2026-01-09 12:53:15,795 | INFO     | mean x: 1767948239.5958333
[2026-01-09 07:53:49] 2026-01-09 12:53:15,795 | INFO     | mean y: 2489850.76875
[2026-01-09 07:53:49] 2026-01-09 12:53:15,795 | INFO     | intersect: -9103367188.666954
[2026-01-09 07:53:49] 2026-01-09 12:53:15,795 | INFO     | chi2: 2.3943952666595147
[2026-01-09 07:53:49] 2026-01-09 12:53:15,795 | INFO     | current chi2=2.3943952666595147 (change=22.28753711291676 %)
[2026-01-09 07:53:49] 2026-01-09 12:53:15,795 | INFO     | right removable region: 479
[2026-01-09 07:53:49] 2026-01-09 12:53:15,796 | INFO     | sum of square deviations: 34292957593.59161
[2026-01-09 07:53:49] 2026-01-09 12:53:15,800 | INFO     | sum of deviations: 32889686378.85833
[2026-01-09 07:53:49] 2026-01-09 12:53:15,800 | INFO     | mean x: 1767948544.5958333
[2026-01-09 07:53:49] 2026-01-09 12:53:15,801 | INFO     | mean y: 2502006.3291666666
[2026-01-09 07:53:49] 2026-01-09 12:53:15,801 | INFO     | intersect: -1693101909.052634
[2026-01-09 07:53:49] 2026-01-09 12:53:15,801 | INFO     | chi2: 0.8151514928551817
[2026-01-09 07:53:49] 2026-01-09 12:53:15,801 | INFO     | current chi2=0.8151514928551817 (change=73.54345332287743 %)
[2026-01-09 07:53:49] 2026-01-09 12:53:15,802 | INFO     | sum of square deviations: 33232421353.54517
[2026-01-09 07:53:49] 2026-01-09 12:53:15,806 | INFO     | sum of deviations: 10632448474.562103
[2026-01-09 07:53:49] 2026-01-09 12:53:15,806 | INFO     | mean x: 1767948697.096842
[2026-01-09 07:53:49] 2026-01-09 12:53:15,806 | INFO     | mean y: 2505201.574736842
[2026-01-09 07:53:49] 2026-01-09 12:53:15,806 | INFO     | intersect: -563135900.1545563
[2026-01-09 07:53:49] 2026-01-09 12:53:15,807 | INFO     | chi2: 0.7411682183790753
[2026-01-09 07:53:49] 2026-01-09 12:53:15,807 | INFO     | current chi2=0.7411682183790753 (change=9.076015332680026 %)
[2026-01-09 07:53:49] 2026-01-09 12:53:15,807 | INFO     | left removable region: 20
[2026-01-09 07:53:49] 2026-01-09 12:53:15,808 | INFO     | sum of square deviations: 29986060889.390175
[2026-01-09 07:53:49] 2026-01-09 12:53:15,812 | INFO     | sum of deviations: 42354763784.629654
[2026-01-09 07:53:49] 2026-01-09 12:53:15,812 | INFO     | mean x: 1767948819.1002178
[2026-01-09 07:53:49] 2026-01-09 12:53:15,812 | INFO     | mean y: 2509105.703703704
[2026-01-09 07:53:49] 2026-01-09 12:53:15,812 | INFO     | intersect: -2494686337.623081
[2026-01-09 07:53:49] 2026-01-09 12:53:15,812 | INFO     | chi2: 0.03484007068677451
[2026-01-09 07:53:49] 2026-01-09 12:53:15,813 | INFO     | current memory leak: 1.41 B/s (using 459 data points, chi2=0.03)
[2026-01-09 07:53:49] 2026-01-09 12:53:15,813 | INFO     | could have reported an average CPU frequency of 3245 MHz (20 samples)
[2026-01-09 07:53:49] 2026-01-09 12:53:15,813 | INFO     | ..............................
[2026-01-09 07:53:49] 2026-01-09 12:53:15,813 | INFO     | . Timing measurements:
[2026-01-09 07:53:49] 2026-01-09 12:53:15,813 | INFO     | . get job = 0 s
[2026-01-09 07:53:49] 2026-01-09 12:53:15,814 | INFO     | . initial setup = 4 s
[2026-01-09 07:53:49] 2026-01-09 12:53:15,814 | INFO     | . payload setup = 14 s
[2026-01-09 07:53:49] 2026-01-09 12:53:15,814 | INFO     | . stage-in = 0 s
[2026-01-09 07:53:49] 2026-01-09 12:53:15,814 | INFO     | . payload execution = 29551 s
[2026-01-09 07:53:49] 2026-01-09 12:53:15,814 | INFO     | . stage-out = 3 s
[2026-01-09 07:53:49] 2026-01-09 12:53:15,814 | INFO     | . log creation = 0 s
[2026-01-09 07:53:49] 2026-01-09 12:53:15,814 | INFO     | ..............................
[2026-01-09 07:53:49] 2026-01-09 12:53:15,946 | INFO     | 
[2026-01-09 07:53:49] 2026-01-09 12:53:15,946 | INFO     | job summary report
[2026-01-09 07:53:49] 2026-01-09 12:53:15,946 | INFO     | --------------------------------------------------
[2026-01-09 07:53:49] 2026-01-09 12:53:15,946 | INFO     | PanDA job id: 6963147650
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | task id: 47898826
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | errors: (none)
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | pilot state: finished 
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | transexitcode: 0
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | exeerrorcode: 0
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | exeerrordiag: 
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | exitcode: 0
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | exitmsg: OK
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | cpuconsumptiontime: 45303 s
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | nevents: 400
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | neventsw: 0
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | pid: 981173
[2026-01-09 07:53:49] 2026-01-09 12:53:15,947 | INFO     | pgrp: 981173
[2026-01-09 07:53:49] 2026-01-09 12:53:15,948 | INFO     | corecount: 8
[2026-01-09 07:53:49] 2026-01-09 12:53:15,948 | INFO     | event service: False
[2026-01-09 07:53:49] 2026-01-09 12:53:15,948 | INFO     | sizes: {0: 2283969, 1: 2283997, 11: 2283997, 12: 2284287, 22: 2284315, 29570: 2322276, 29571: 2322403, 29574: 2331457, 29575: 2331513, 29590: 2331707}
[2026-01-09 07:53:49] 2026-01-09 12:53:15,948 | INFO     | --------------------------------------------------
[2026-01-09 07:53:49] 2026-01-09 12:53:15,948 | INFO     | 
[2026-01-09 07:53:49] 2026-01-09 12:53:15,948 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 07:53:49] 2026-01-09 12:53:16,101 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,101 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,101 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,101 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,101 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,101 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,101 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 07:53:49] 2026-01-09 12:53:16,102 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,103 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 07:53:49] 2026-01-09 12:53:16,103 | INFO     | job 6963147650 has completed (purged errors)
[2026-01-09 07:53:49] 2026-01-09 12:53:16,103 | INFO     | overall cleanup function is called
[2026-01-09 07:53:49] 2026-01-09 12:53:17,124 | INFO     | --- collectZombieJob: --- 10, [981173]
[2026-01-09 07:53:49] 2026-01-09 12:53:17,124 | INFO     | zombie collector waiting for pid 981173
[2026-01-09 07:53:49] 2026-01-09 12:53:17,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 07:53:49] 2026-01-09 12:53:17,125 | INFO     | collected zombie processes
[2026-01-09 07:53:49] 2026-01-09 12:53:17,125 | INFO     | will attempt to kill all subprocesses of pid=981173
[2026-01-09 07:53:49] 2026-01-09 12:53:19,089 | INFO     | process IDs to be killed: [981173] (in reverse order)
[2026-01-09 07:53:49] 2026-01-09 12:53:19,248 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 07:53:49] 2026-01-09 12:53:19,248 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 07:53:49] 2026-01-09 12:53:19,277 | INFO     | did not find any defunct processes belonging to 981173
[2026-01-09 07:53:49] 2026-01-09 12:53:19,294 | INFO     | did not find any defunct processes belonging to 981173
[2026-01-09 07:53:49] 2026-01-09 12:53:19,295 | INFO     | ready for new job
[2026-01-09 07:53:49] 2026-01-09 12:53:19,295 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 07:53:49] 2026-01-09 12:53:19,297 | INFO     | ***************************************
[2026-01-09 07:53:49] 2026-01-09 12:53:19,297 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 07:53:49] 2026-01-09 12:53:19,298 | INFO     | ***************************************
[2026-01-09 07:53:49] 2026-01-09 12:53:19,298 | INFO     | 
[2026-01-09 07:53:49] 2026-01-09 12:53:19,302 | INFO     | architecture information:
[2026-01-09 07:53:49] 2026-01-09 12:53:19,303 | INFO     | executing command: cat /etc/os-release
[2026-01-09 07:53:49] 2026-01-09 12:53:19,318 | INFO     | cat /etc/os-release:
[2026-01-09 07:53:49] NAME="CentOS Linux"
[2026-01-09 07:53:49] VERSION="7 (Core)"
[2026-01-09 07:53:49] ID="centos"
[2026-01-09 07:53:49] ID_LIKE="rhel fedora"
[2026-01-09 07:53:49] VERSION_ID="7"
[2026-01-09 07:53:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 07:53:49] ANSI_COLOR="0;31"
[2026-01-09 07:53:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 07:53:49] HOME_URL="https://www.centos.org/"
[2026-01-09 07:53:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 07:53:49] 
[2026-01-09 07:53:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 07:53:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 07:53:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 07:53:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 07:53:49] 
[2026-01-09 07:53:49] 2026-01-09 12:53:19,319 | INFO     | ***************************************
[2026-01-09 07:53:49] 2026-01-09 12:53:19,822 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 07:53:49] 2026-01-09 12:53:19,857 | INFO     | sufficient remaining disk space (74255958016 B)
[2026-01-09 07:53:49] 2026-01-09 12:53:19,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 07:53:49] 2026-01-09 12:53:19,858 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 07:53:49] 2026-01-09 12:53:19,858 | INFO     | update_server=False
[2026-01-09 07:53:49] 2026-01-09 12:53:19,858 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 07:53:49] 2026-01-09 12:53:19,866 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 07:53:49] 2026-01-09 12:53:19,866 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 07:53:49] 2026-01-09 12:53:19,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:53:49] 2026-01-09 12:53:19,867 | INFO     | will abort loop
[2026-01-09 07:53:49] 2026-01-09 12:53:20,124 | INFO     | all job control threads have been joined
[2026-01-09 07:53:49] 2026-01-09 12:53:20,198 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 07:53:49] 2026-01-09 12:53:20,393 | INFO     | all data control threads have been joined
[2026-01-09 07:53:49] 2026-01-09 12:53:20,698 | INFO     | all payload control threads have been joined
[2026-01-09 07:53:49] 2026-01-09 12:53:20,864 | INFO     | [job] retrieve thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:20,871 | INFO     | [job] job monitor thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:20,875 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 07:53:49] 2026-01-09 12:53:20,957 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:20,962 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:53:49] 2026-01-09 12:53:21,132 | INFO     | [job] control thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:21,329 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:21,354 | INFO     | [data] copytool_in thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:21,399 | INFO     | [data] control thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:21,458 | INFO     | [payload] failed_post thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:21,704 | INFO     | [payload] control thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:21,806 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:21,968 | INFO     | [job] queue monitor thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:22,180 | INFO     | [payload] validate_post thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:22,213 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:22,214 | INFO     | [job] validate thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:22,882 | INFO     | [data] copytool_out thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:24,013 | INFO     | [monitor] cgroup control has ended
[2026-01-09 07:53:49] 2026-01-09 12:53:24,207 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 07:53:49] 2026-01-09 12:53:25,590 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140575388333888)>', '<ExcThread(monitor, started 140574682248960)>']
[2026-01-09 07:53:49] 2026-01-09 12:53:30,616 | INFO     | all workflow threads have been joined
[2026-01-09 07:53:49] 2026-01-09 12:53:30,616 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 07:53:49] 2026-01-09 12:53:30,617 | INFO     | traces error code: 0
[2026-01-09 07:53:49] 2026-01-09 12:53:30,617 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 07:53:49] 2026-01-09 12:53:48,837 | INFO     | PID=972291 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 07:53:49] 2026-01-09 12:53:48,837 | INFO     | .. there are 29 such processes running
[2026-01-09 07:53:49] 2026-01-09 12:53:48,838 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 07:53:49] 2026-01-09 12:53:48,838 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 07:53:49] 2026-01-09 12:53:48,838 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 07:53:49] 2026-01-09 12:53:48,838 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 07:53:49] 2026-01-09 12:53:48,838 | INFO     | [monitor] control thread has ended
[2026-01-09 07:53:49] 2026-01-09 12:53:48,940 [wrapper] ==== pilot stdout END ====
[2026-01-09 07:53:49] 2026-01-09 12:53:48,947 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 07:53:49] 2026-01-09 12:53:48,959 [wrapper] pilotpid: 972291
[2026-01-09 07:53:49] 2026-01-09 12:53:48,973 [wrapper] Pilot exit status: 0
[2026-01-09 07:53:49] 2026-01-09 12:53:49,057 [wrapper] pandaids: 6963147650
[2026-01-09 07:53:49] 2026-01-09 12:53:49,216 [wrapper] cleanup supervisor_pilot 3323294 972292
[2026-01-09 07:53:49] 2026-01-09 12:53:49,219 [wrapper] Test setup, not cleaning
[2026-01-09 07:53:49] 2026-01-09 12:53:49,221 [wrapper] apfmon messages muted
[2026-01-09 07:53:49] 2026-01-09 12:53:49,223 [wrapper] ==== wrapper stdout END ====
[2026-01-09 07:53:49] 2026-01-09 12:53:49,225 [wrapper] ==== wrapper stderr END ====
[2026-01-09 07:53:49]  *** Error codes and diagnostics ***
[2026-01-09 07:53:49]     "exeErrorCode": 0,
[2026-01-09 07:53:49]     "exeErrorDiag": "",
[2026-01-09 07:53:49]     "pilotErrorCode": 0,
[2026-01-09 07:53:49]     "pilotErrorDiag": "",
[2026-01-09 07:53:49]  *** Listing of results directory ***
[2026-01-09 07:53:49] total 454252
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 07:53:49] -rwx------. 1 boincer umatlas     36322 Jan  8 11:05 runpilot2-wrapper.sh
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:07 queuedata.json
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas       100 Jan  8 23:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 07:53:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 23:39 run_atlas
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas       105 Jan  8 23:39 job.xml
[2026-01-09 07:53:49] -rw-r--r--. 2 boincer umatlas 225756203 Jan  8 23:39 EVNT.47898824._000816.pool.root.1
[2026-01-09 07:53:49] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 23:39 start_atlas.sh
[2026-01-09 07:53:49] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 23:39 shared
[2026-01-09 07:53:49] -rw-r--r--. 2 boincer umatlas    592402 Jan  8 23:39 input.tar.gz
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas         0 Jan  8 23:39 boinc_lockfile
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas      2519 Jan  8 23:39 pandaJob.out
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas        57 Jan  8 23:39 setup.sh.local
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas    989771 Jan  8 23:39 agis_schedconf.cvmfs.json
[2026-01-09 07:53:49] drwx------. 5 boincer umatlas      4096 Jan  8 23:39 pilot3
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas      6944 Jan  9 07:46 init_data.xml
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas 226570639 Jan  9 07:52 HITS.47898826._027768.pool.root.1
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas       530 Jan  9 07:52 boinc_task_state.xml
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas      1035 Jan  9 07:52 memory_monitor_summary.json
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas   1516240 Jan  9 07:52 agis_ddmendpoints.agis.ALL.json
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas    667481 Jan  9 07:52 log.47898826._027768.job.log.tgz.1
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas      7776 Jan  9 07:53 heartbeat.json
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas        28 Jan  9 07:53 wrapper_checkpoint.txt
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 07:53 boinc_mmap_file
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas        95 Jan  9 07:53 pilot_heartbeat.json
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas       822 Jan  9 07:53 pilotlog.txt
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas   3788030 Jan  9 07:53 log.47898826._027768.job.log.1
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas       357 Jan  9 07:53 output.list
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas       620 Jan  9 07:53 runtime_log
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas   4474880 Jan  9 07:53 result.tar.gz
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 07:53 runtime_log.err
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas       657 Jan  9 07:53 CW8MDm1g7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAnfKDmdbNO6n.diag
[2026-01-09 07:53:49] -rw-r--r--. 1 boincer umatlas     21401 Jan  9 07:53 stderr.txt
[2026-01-09 07:53:49] HITS file was successfully produced:
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas 226570639 Jan  9 07:52 shared/HITS.pool.root.1
[2026-01-09 07:53:49]  *** Contents of shared directory: ***
[2026-01-09 07:53:49] total 446708
[2026-01-09 07:53:49] -rw-r--r--. 2 boincer umatlas 225756203 Jan  8 23:39 ATLAS.root_0
[2026-01-09 07:53:49] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 23:39 start_atlas.sh
[2026-01-09 07:53:49] -rw-r--r--. 2 boincer umatlas    592402 Jan  8 23:39 input.tar.gz
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas 226570639 Jan  9 07:52 HITS.pool.root.1
[2026-01-09 07:53:49] -rw-------. 1 boincer umatlas   4474880 Jan  9 07:53 result.tar.gz
07:53:51 (967344): run_atlas exited; CPU time 46506.461075
07:53:51 (967344): called boinc_finish(0)

</stderr_txt>
]]>

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