Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:52:37 (4190999): wrapper (7.7.26015): starting
18:52:37 (4190999): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 18:52:37] Arguments: --nthreads 3
[2026-01-09 18:52:37] Threads: 3
[2026-01-09 18:52:37] Checking for CVMFS
[2026-01-09 18:52:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:52:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:52:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:52:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:52:37] 2.9.2.0 185998 137158 107800 154951 2 57 20237355 36864001 12 130560 1 42647129 99.970 4677339 1603 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 18:52:37] CVMFS is ok
[2026-01-09 18:52:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:52:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:52:37] Further information can be found at the LHC@home message board.
[2026-01-09 18:52:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:52:37] Checking for apptainer binary...
[2026-01-09 18:52:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:52:37] Running /usr/bin/apptainer --version
[2026-01-09 18:52:37] apptainer version 1.4.1-1.1
[2026-01-09 18:52:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:52:37] thA387a
[2026-01-09 18:52:37] apptainer works
[2026-01-09 18:52:37] Set ATHENA_PROC_NUMBER=3
[2026-01-09 18:52:37] Set ATHENA_CORE_NUMBER=3
[2026-01-09 18:52:37] Starting ATLAS job with PandaID=6963151773
[2026-01-09 18:52:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:47:56]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:47:56] 2026-01-09 19:47:39,881 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:47:56] 2026-01-09 19:47:39,881 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:47:56] 2026-01-09 19:47:39,881 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:47:56] 2026-01-09 19:47:39,881 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:47:56] 2026-01-09 19:47:39,881 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:47:56] 2026-01-09 19:47:39,881 | INFO     | job 6963151773 has completed (purged errors)
[2026-01-09 20:47:56] 2026-01-09 19:47:39,881 | INFO     | overall cleanup function is called
[2026-01-09 20:47:56] 2026-01-09 19:47:40,569 | INFO     | PID=743 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-01-09 20:47:56] 2026-01-09 19:47:40,887 | INFO     | --- collectZombieJob: --- 10, [7408]
[2026-01-09 20:47:56] 2026-01-09 19:47:40,888 | INFO     | zombie collector waiting for pid 7408
[2026-01-09 20:47:56] 2026-01-09 19:47:40,888 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:47:56] 2026-01-09 19:47:40,888 | INFO     | collected zombie processes
[2026-01-09 20:47:56] 2026-01-09 19:47:40,888 | INFO     | will attempt to kill all subprocesses of pid=7408
[2026-01-09 20:47:56] 2026-01-09 19:47:40,928 | INFO     | process IDs to be killed: [7408] (in reverse order)
[2026-01-09 20:47:56] 2026-01-09 19:47:40,952 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:47:56] 2026-01-09 19:47:40,952 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:47:56] 2026-01-09 19:47:40,954 | INFO     | did not find any defunct processes belonging to 7408
[2026-01-09 20:47:56] 2026-01-09 19:47:40,955 | INFO     | did not find any defunct processes belonging to 7408
[2026-01-09 20:47:56] 2026-01-09 19:47:40,955 | INFO     | ready for new job
[2026-01-09 20:47:56] 2026-01-09 19:47:40,955 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:47:56] 2026-01-09 19:47:40,956 | INFO     | ***************************************
[2026-01-09 20:47:56] 2026-01-09 19:47:40,956 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:47:56] 2026-01-09 19:47:40,956 | INFO     | ***************************************
[2026-01-09 20:47:56] 2026-01-09 19:47:40,956 | INFO     | 
[2026-01-09 20:47:56] 2026-01-09 19:47:40,957 | INFO     | architecture information:
[2026-01-09 20:47:56] 2026-01-09 19:47:40,957 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:47:56] 2026-01-09 19:47:40,966 | INFO     | cat /etc/os-release:
[2026-01-09 20:47:56] NAME="CentOS Linux"
[2026-01-09 20:47:56] VERSION="7 (Core)"
[2026-01-09 20:47:56] ID="centos"
[2026-01-09 20:47:56] ID_LIKE="rhel fedora"
[2026-01-09 20:47:56] VERSION_ID="7"
[2026-01-09 20:47:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:47:56] ANSI_COLOR="0;31"
[2026-01-09 20:47:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:47:56] HOME_URL="https://www.centos.org/"
[2026-01-09 20:47:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:47:56] 
[2026-01-09 20:47:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:47:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:47:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:47:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:47:56] 
[2026-01-09 20:47:56] 2026-01-09 19:47:40,966 | INFO     | ***************************************
[2026-01-09 20:47:56] 2026-01-09 19:47:41,469 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 20:47:56] 2026-01-09 19:47:41,480 | INFO     | sufficient remaining disk space (238035140608 B)
[2026-01-09 20:47:56] 2026-01-09 19:47:41,481 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:47:56] 2026-01-09 19:47:41,481 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:47:56] 2026-01-09 19:47:41,481 | INFO     | update_server=False
[2026-01-09 20:47:56] 2026-01-09 19:47:41,481 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:47:56] 2026-01-09 19:47:41,481 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 20:47:56] 2026-01-09 19:47:41,481 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:47:56] 2026-01-09 19:47:41,481 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:47:56] 2026-01-09 19:47:41,481 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:47:56] 2026-01-09 19:47:41,481 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:47:56] 2026-01-09 19:47:41,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:47:56] 2026-01-09 19:47:41,683 | INFO     | all job control threads have been joined
[2026-01-09 20:47:56] 2026-01-09 19:47:41,819 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 20:47:56] 2026-01-09 19:47:41,819 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 20:47:56] 2026-01-09 19:47:41,819 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:47:56] 2026-01-09 19:47:41,819 | INFO     | will abort loop
[2026-01-09 20:47:56] 2026-01-09 19:47:41,988 | INFO     | all payload control threads have been joined
[2026-01-09 20:47:56] 2026-01-09 19:47:41,999 | INFO     | all data control threads have been joined
[2026-01-09 20:47:56] 2026-01-09 19:47:42,486 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:42,487 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:42,520 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:42,573 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:42,689 | INFO     | [job] control thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:42,825 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:42,829 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:47:56] 2026-01-09 19:47:42,994 | INFO     | [payload] control thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:43,003 | INFO     | [data] control thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:43,060 | INFO     | [job] validate thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:43,098 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:43,122 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:43,198 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:43,734 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:43,835 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:44,836 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:45,488 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:47:56] 2026-01-09 19:47:50,971 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:47:56] 2026-01-09 19:47:51,471 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140472156931904)>', '<ExcThread(monitor, started 140471510746880)>']
[2026-01-09 20:47:56] 2026-01-09 19:47:51,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:47:56] 2026-01-09 19:47:51,534 | INFO     | [monitor] control thread has ended
[2026-01-09 20:47:56] 2026-01-09 19:47:56,492 | INFO     | all workflow threads have been joined
[2026-01-09 20:47:56] 2026-01-09 19:47:56,492 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:47:56] 2026-01-09 19:47:56,492 | INFO     | traces error code: 0
[2026-01-09 20:47:56] 2026-01-09 19:47:56,492 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:47:56] 2026-01-09 19:47:56,543 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:47:56] 2026-01-09 19:47:56,546 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:47:56] 2026-01-09 19:47:56,548 [wrapper] pilotpid: 743
[2026-01-09 20:47:56] 2026-01-09 19:47:56,550 [wrapper] Pilot exit status: 0
[2026-01-09 20:47:56] 2026-01-09 19:47:56,557 [wrapper] pandaids: 6963151773
[2026-01-09 20:47:56] 2026-01-09 19:47:56,573 [wrapper] cleanup supervisor_pilot   21850 744
[2026-01-09 20:47:56] 2026-01-09 19:47:56,575 [wrapper] Test setup, not cleaning
[2026-01-09 20:47:56] 2026-01-09 19:47:56,578 [wrapper] apfmon messages muted
[2026-01-09 20:47:56] 2026-01-09 19:47:56,580 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:47:56] 2026-01-09 19:47:56,583 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:47:56]  *** Error codes and diagnostics ***
[2026-01-09 20:47:56]     "exeErrorCode": 0,
[2026-01-09 20:47:56]     "exeErrorDiag": "",
[2026-01-09 20:47:56]     "pilotErrorCode": 0,
[2026-01-09 20:47:56]     "pilotErrorDiag": "",
[2026-01-09 20:47:56]  *** Listing of results directory ***
[2026-01-09 20:47:56] total 448416
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc      5112 Jan  8 17:02 queuedata.json
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc    579449 Jan  8 17:02 pilot3.tar.gz
[2026-01-09 20:47:56] -rwx------ 1 boinc boinc     36322 Jan  8 17:02 runpilot2-wrapper.sh
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc       100 Jan  9 18:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:47:56] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 18:52 run_atlas
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc       105 Jan  9 18:52 job.xml
[2026-01-09 20:47:56] -rw-r--r-- 2 boinc boinc 225454622 Jan  9 18:52 EVNT.47898824._001125.pool.root.1
[2026-01-09 20:47:56] -rw-r--r-- 2 boinc boinc    592394 Jan  9 18:52 input.tar.gz
[2026-01-09 20:47:56] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:52 start_atlas.sh
[2026-01-09 20:47:56] drwxrwx--x 2 boinc boinc      4096 Jan  9 18:52 shared
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:52 boinc_setup_complete
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc      6440 Jan  9 18:52 init_data.xml
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:52 boinc_lockfile
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc      2519 Jan  9 18:52 pandaJob.out
[2026-01-09 20:47:56] -rw------- 1 boinc boinc    989356 Jan  9 18:52 agis_schedconf.cvmfs.json
[2026-01-09 20:47:56] -rw------- 1 boinc boinc   1516240 Jan  9 18:52 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:47:56] drwx------ 5 boinc boinc      4096 Jan  9 18:52 pilot3
[2026-01-09 20:47:56] -rw------- 1 boinc boinc 227295801 Jan  9 20:47 HITS.47898826._028724.pool.root.1
[2026-01-09 20:47:56] -rw------- 1 boinc boinc        95 Jan  9 20:47 pilot_heartbeat.json
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc       529 Jan  9 20:47 boinc_task_state.xml
[2026-01-09 20:47:56] -rw------- 1 boinc boinc      1023 Jan  9 20:47 memory_monitor_summary.json
[2026-01-09 20:47:56] -rw------- 1 boinc boinc    271025 Jan  9 20:47 log.47898826._028724.job.log.tgz.1
[2026-01-09 20:47:56] -rw------- 1 boinc boinc      7761 Jan  9 20:47 heartbeat.json
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc      8192 Jan  9 20:47 boinc_mmap_file
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc        27 Jan  9 20:47 wrapper_checkpoint.txt
[2026-01-09 20:47:56] -rw------- 1 boinc boinc      4742 Jan  9 20:47 pilotlog.txt
[2026-01-09 20:47:56] -rw------- 1 boinc boinc    990538 Jan  9 20:47 log.47898826._028724.job.log.1
[2026-01-09 20:47:56] -rw------- 1 boinc boinc       357 Jan  9 20:47 output.list
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc       620 Jan  9 20:47 runtime_log
[2026-01-09 20:47:56] -rw------- 1 boinc boinc   1280000 Jan  9 20:47 result.tar.gz
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc      8902 Jan  9 20:47 runtime_log.err
[2026-01-09 20:47:56] -rw------- 1 boinc boinc       660 Jan  9 20:47 7XYMDmMe7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqskKDmzvwv4m.diag
[2026-01-09 20:47:56] -rw-r--r-- 1 boinc boinc     11671 Jan  9 20:47 stderr.txt
[2026-01-09 20:47:56] HITS file was successfully produced:
[2026-01-09 20:47:56] -rw------- 1 boinc boinc 227295801 Jan  9 20:47 shared/HITS.pool.root.1
[2026-01-09 20:47:56]  *** Contents of shared directory: ***
[2026-01-09 20:47:56] total 444000
[2026-01-09 20:47:56] -rw-r--r-- 2 boinc boinc 225454622 Jan  9 18:52 ATLAS.root_0
[2026-01-09 20:47:56] -rw-r--r-- 2 boinc boinc    592394 Jan  9 18:52 input.tar.gz
[2026-01-09 20:47:56] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:52 start_atlas.sh
[2026-01-09 20:47:56] -rw------- 1 boinc boinc 227295801 Jan  9 20:47 HITS.pool.root.1
[2026-01-09 20:47:56] -rw------- 1 boinc boinc   1280000 Jan  9 20:47 result.tar.gz
20:47:57 (4190999): run_atlas exited; CPU time 19924.043459
20:47:57 (4190999): called boinc_finish(0)

</stderr_txt>
]]>

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