Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:50:38 (561): wrapper (7.7.26015): starting
08:50:38 (561): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 08:50:38] Arguments: --nthreads 8
[2026-01-09 08:50:38] Threads: 8
[2026-01-09 08:50:38] Checking for CVMFS
[2026-01-09 08:50:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 08:50:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 08:50:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 08:50:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 08:50:38] 2.11.2.0 32220 35138 97548 154936 0 57 17074864 25165824 0 130560 0 15179022 99.812 9291551 3928 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 08:50:38] CVMFS is ok
[2026-01-09 08:50:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 08:50:38] Checking for apptainer binary...
[2026-01-09 08:50:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 08:50:38] Running /usr/bin/apptainer --version
[2026-01-09 08:50:38] apptainer version 1.3.2-1.el7
[2026-01-09 08:50:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 08:50:40] cg-vwn447.simple-grid.lan
[2026-01-09 08:50:40] apptainer works
[2026-01-09 08:50:40] Set ATHENA_PROC_NUMBER=8
[2026-01-09 08:50:40] Set ATHENA_CORE_NUMBER=8
[2026-01-09 08:50:40] Starting ATLAS job with PandaID=6963161134
[2026-01-09 08:50:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 11:43:19]  *** The last 200 lines of the pilot log: ***
[2026-01-09 11:43:19] 2026-01-09 10:42:08,889 | INFO     | PID=4366 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 11:43:19] 2026-01-09 10:42:09,050 | WARNING  | process 10795 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 11:43:19] 2026-01-09 10:42:09,051 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6963161134/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 11:43:19] 2026-01-09 10:42:09,114 | INFO     | number of running child processes to parent process 10795: 1
[2026-01-09 11:43:19] 2026-01-09 10:42:09,115 | INFO     | maximum number of monitored processes: 6
[2026-01-09 11:43:19] 2026-01-09 10:42:09,889 | INFO     | time since job start (10274s) is within the limit (349056.0s)
[2026-01-09 11:43:19] 2026-01-09 10:42:11,617 | INFO     | monitor loop #695: job 0:6963161134 is in state 'finished'
[2026-01-09 11:43:19] 2026-01-09 10:42:11,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 11:43:19] 2026-01-09 10:42:11,895 | INFO     | time since job start (10276s) is within the limit (349056.0s)
[2026-01-09 11:43:19] 2026-01-09 10:42:13,040 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 11:43:19] 2026-01-09 10:42:13,041 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 11:43:19] 2026-01-09 10:42:13,043 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6963161134/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 11:43:19] 2026-01-09 10:42:13,044 | INFO     | extracted standard info from prmon json
[2026-01-09 11:43:19] 2026-01-09 10:42:13,044 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 11:43:19] 2026-01-09 10:42:13,044 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 11:43:19] 2026-01-09 10:42:13,045 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 11:43:19] 2026-01-09 10:42:13,045 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 11:43:19] 2026-01-09 10:42:13,049 | INFO     | fitting pss+swap vs Time
[2026-01-09 11:43:19] 2026-01-09 10:42:13,049 | INFO     | sum of square deviations: 1470248962.0
[2026-01-09 11:43:19] 2026-01-09 10:42:13,051 | INFO     | sum of deviations: 12337519925.000002
[2026-01-09 11:43:19] 2026-01-09 10:42:13,051 | INFO     | mean x: 1767950180.5
[2026-01-09 11:43:19] 2026-01-09 10:42:13,051 | INFO     | mean y: 2494831.964285714
[2026-01-09 11:43:19] 2026-01-09 10:42:13,051 | INFO     | intersect: -14833169835.776592
[2026-01-09 11:43:19] 2026-01-09 10:42:13,051 | INFO     | chi2: 1.5910431747554574
[2026-01-09 11:43:19] 2026-01-09 10:42:13,052 | INFO     | sum of square deviations: 1342841922.0
[2026-01-09 11:43:19] 2026-01-09 10:42:13,053 | INFO     | sum of deviations: 11925783406.0
[2026-01-09 11:43:19] 2026-01-09 10:42:13,053 | INFO     | mean x: 1767950028.0
[2026-01-09 11:43:19] 2026-01-09 10:42:13,053 | INFO     | mean y: 2494339.042944785
[2026-01-09 11:43:19] 2026-01-09 10:42:13,054 | INFO     | intersect: -15698675516.569916
[2026-01-09 11:43:19] 2026-01-09 10:42:13,054 | INFO     | chi2: 1.5924168442335718
[2026-01-09 11:43:19] 2026-01-09 10:42:13,054 | INFO     | current chi2=1.5924168442335718 (change=-0.08633766197611073 %)
[2026-01-09 11:43:19] 2026-01-09 10:42:13,054 | INFO     | right removable region: 162
[2026-01-09 11:43:19] 2026-01-09 10:42:13,055 | INFO     | sum of square deviations: 1342841922.0
[2026-01-09 11:43:19] 2026-01-09 10:42:13,056 | INFO     | sum of deviations: -12725733745.999998
[2026-01-09 11:43:19] 2026-01-09 10:42:13,056 | INFO     | mean x: 1767950333.0
[2026-01-09 11:43:19] 2026-01-09 10:42:13,056 | INFO     | mean y: 2524410.4969325154
[2026-01-09 11:43:19] 2026-01-09 10:42:13,056 | INFO     | intersect: 16756890539.014355
[2026-01-09 11:43:19] 2026-01-09 10:42:13,057 | INFO     | chi2: 0.13328506580443616
[2026-01-09 11:43:19] 2026-01-09 10:42:13,057 | INFO     | current chi2=0.13328506580443616 (change=91.62278762014601 %)
[2026-01-09 11:43:19] 2026-01-09 10:42:13,057 | INFO     | sum of square deviations: 1223016419.5
[2026-01-09 11:43:19] 2026-01-09 10:42:13,058 | INFO     | sum of deviations: -13956875060.499998
[2026-01-09 11:43:19] 2026-01-09 10:42:13,059 | INFO     | mean x: 1767950485.5
[2026-01-09 11:43:19] 2026-01-09 10:42:13,059 | INFO     | mean y: 2525932.8164556962
[2026-01-09 11:43:19] 2026-01-09 10:42:13,059 | INFO     | intersect: 20178104646.11092
[2026-01-09 11:43:19] 2026-01-09 10:42:13,059 | INFO     | chi2: 0.11506335721849878
[2026-01-09 11:43:19] 2026-01-09 10:42:13,060 | INFO     | current chi2=0.11506335721849878 (change=13.671230513306995 %)
[2026-01-09 11:43:19] 2026-01-09 10:42:13,060 | INFO     | left removable region: 20
[2026-01-09 11:43:19] 2026-01-09 10:42:13,060 | INFO     | sum of square deviations: 887813855.5
[2026-01-09 11:43:19] 2026-01-09 10:42:13,061 | INFO     | sum of deviations: -2682695698.0
[2026-01-09 11:43:19] 2026-01-09 10:42:13,061 | INFO     | mean x: 1767950607.5
[2026-01-09 11:43:19] 2026-01-09 10:42:13,061 | INFO     | mean y: 2510014.3943661973
[2026-01-09 11:43:19] 2026-01-09 10:42:13,062 | INFO     | intersect: 5344703605.57868
[2026-01-09 11:43:19] 2026-01-09 10:42:13,062 | INFO     | chi2: 0.04970793846169389
[2026-01-09 11:43:19] 2026-01-09 10:42:13,062 | INFO     | current memory leak: -3.02 B/s (using 142 data points, chi2=0.05)
[2026-01-09 11:43:19] 2026-01-09 10:42:13,063 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-01-09 11:43:19] 2026-01-09 10:42:13,063 | INFO     | ..............................
[2026-01-09 11:43:19] 2026-01-09 10:42:13,063 | INFO     | . Timing measurements:
[2026-01-09 11:43:19] 2026-01-09 10:42:13,063 | INFO     | . get job = 0 s
[2026-01-09 11:43:19] 2026-01-09 10:42:13,064 | INFO     | . initial setup = 1 s
[2026-01-09 11:43:19] 2026-01-09 10:42:13,064 | INFO     | . payload setup = 7 s
[2026-01-09 11:43:19] 2026-01-09 10:42:13,064 | INFO     | . stage-in = 0 s
[2026-01-09 11:43:19] 2026-01-09 10:42:13,064 | INFO     | . payload execution = 10239 s
[2026-01-09 11:43:19] 2026-01-09 10:42:13,064 | INFO     | . stage-out = 1 s
[2026-01-09 11:43:19] 2026-01-09 10:42:13,064 | INFO     | . log creation = 0 s
[2026-01-09 11:43:19] 2026-01-09 10:42:13,064 | INFO     | ..............................
[2026-01-09 11:43:19] 2026-01-09 10:42:13,343 | INFO     | 
[2026-01-09 11:43:19] 2026-01-09 10:42:13,344 | INFO     | job summary report
[2026-01-09 11:43:19] 2026-01-09 10:42:13,344 | INFO     | --------------------------------------------------
[2026-01-09 11:43:19] 2026-01-09 10:42:13,344 | INFO     | PanDA job id: 6963161134
[2026-01-09 11:43:19] 2026-01-09 10:42:13,344 | INFO     | task id: 47898826
[2026-01-09 11:43:19] 2026-01-09 10:42:13,344 | INFO     | errors: (none)
[2026-01-09 11:43:19] 2026-01-09 10:42:13,344 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 11:43:19] 2026-01-09 10:42:13,344 | INFO     | pilot state: finished 
[2026-01-09 11:43:19] 2026-01-09 10:42:13,344 | INFO     | transexitcode: 0
[2026-01-09 11:43:19] 2026-01-09 10:42:13,344 | INFO     | exeerrorcode: 0
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | exeerrordiag: 
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | exitcode: 0
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | exitmsg: OK
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | cpuconsumptiontime: 76894 s
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | nevents: 400
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | neventsw: 0
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | pid: 10795
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | pgrp: 10795
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | corecount: 8
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | event service: False
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | sizes: {0: 2283143, 1: 2283999, 6: 2284261, 12: 2284289, 10251: 2312716, 10252: 2321714, 10253: 2321898, 10261: 2322156}
[2026-01-09 11:43:19] 2026-01-09 10:42:13,345 | INFO     | --------------------------------------------------
[2026-01-09 11:43:19] 2026-01-09 10:42:13,346 | INFO     | 
[2026-01-09 11:43:19] 2026-01-09 10:42:13,346 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-01-09 11:43:19] 2026-01-09 10:42:13,445 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,445 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,445 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,446 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,446 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,446 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,446 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,446 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,446 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,446 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,446 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,446 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,447 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,447 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,447 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,447 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,447 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,447 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 11:43:19] 2026-01-09 10:42:13,447 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,447 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 11:43:19] 2026-01-09 10:42:13,448 | INFO     | job 6963161134 has completed (purged errors)
[2026-01-09 11:43:19] 2026-01-09 10:42:13,448 | INFO     | overall cleanup function is called
[2026-01-09 11:43:19] 2026-01-09 10:42:14,456 | INFO     | --- collectZombieJob: --- 10, [10795]
[2026-01-09 11:43:19] 2026-01-09 10:42:14,456 | INFO     | zombie collector waiting for pid 10795
[2026-01-09 11:43:19] 2026-01-09 10:42:14,457 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 11:43:19] 2026-01-09 10:42:14,457 | INFO     | collected zombie processes
[2026-01-09 11:43:19] 2026-01-09 10:42:14,457 | INFO     | will attempt to kill all subprocesses of pid=10795
[2026-01-09 11:43:19] 2026-01-09 10:42:14,517 | INFO     | process IDs to be killed: [10795] (in reverse order)
[2026-01-09 11:43:19] 2026-01-09 10:42:14,584 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 11:43:19] 2026-01-09 10:42:14,584 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 11:43:19] 2026-01-09 10:42:14,586 | INFO     | did not find any defunct processes belonging to 10795
[2026-01-09 11:43:19] 2026-01-09 10:42:14,588 | INFO     | did not find any defunct processes belonging to 10795
[2026-01-09 11:43:19] 2026-01-09 10:42:14,588 | INFO     | ready for new job
[2026-01-09 11:43:19] 2026-01-09 10:42:14,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 11:43:19] 2026-01-09 10:42:14,590 | INFO     | ***************************************
[2026-01-09 11:43:19] 2026-01-09 10:42:14,590 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 11:43:19] 2026-01-09 10:42:14,590 | INFO     | ***************************************
[2026-01-09 11:43:19] 2026-01-09 10:42:14,590 | INFO     | 
[2026-01-09 11:43:19] 2026-01-09 10:42:14,591 | INFO     | pilot is running in a VM
[2026-01-09 11:43:19] 2026-01-09 10:42:14,591 | INFO     | architecture information:
[2026-01-09 11:43:19] 2026-01-09 10:42:14,593 | INFO     | executing command: cat /etc/os-release
[2026-01-09 11:43:19] 2026-01-09 10:42:14,620 | INFO     | cat /etc/os-release:
[2026-01-09 11:43:19] NAME="CentOS Linux"
[2026-01-09 11:43:19] VERSION="7 (Core)"
[2026-01-09 11:43:19] ID="centos"
[2026-01-09 11:43:19] ID_LIKE="rhel fedora"
[2026-01-09 11:43:19] VERSION_ID="7"
[2026-01-09 11:43:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 11:43:19] ANSI_COLOR="0;31"
[2026-01-09 11:43:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 11:43:19] HOME_URL="https://www.centos.org/"
[2026-01-09 11:43:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 11:43:19] 
[2026-01-09 11:43:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 11:43:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 11:43:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 11:43:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 11:43:19] 
[2026-01-09 11:43:19] 2026-01-09 10:42:14,620 | INFO     | ***************************************
[2026-01-09 11:43:19] 2026-01-09 10:42:15,123 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-01-09 11:43:19] 2026-01-09 10:42:15,149 | INFO     | sufficient remaining disk space (498270732288 B)
[2026-01-09 11:43:19] 2026-01-09 10:42:15,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 11:43:19] 2026-01-09 10:42:15,149 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 11:43:19] 2026-01-09 10:42:15,149 | INFO     | update_server=False
[2026-01-09 11:43:19] 2026-01-09 10:42:15,150 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 11:43:19] 2026-01-09 10:42:15,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:43:19] 2026-01-09 10:42:15,150 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:43:19] 2026-01-09 10:42:15,151 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 11:43:19] 2026-01-09 10:42:15,151 | INFO     | aborting loop
[2026-01-09 11:43:19] 2026-01-09 10:42:15,602 | INFO     | all job control threads have been joined
[2026-01-09 11:43:19] 2026-01-09 10:42:15,787 | INFO     | all data control threads have been joined
[2026-01-09 11:43:19] 2026-01-09 10:42:16,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 11:43:19] 2026-01-09 10:42:16,155 | INFO     | [job] retrieve thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:16,156 | INFO     | [job] job monitor thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:16,157 | INFO     | [job] queue monitor thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:16,247 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:16,342 | INFO     | all payload control threads have been joined
[2026-01-09 11:43:19] 2026-01-09 10:42:16,608 | INFO     | [job] control thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:16,693 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:16,793 | INFO     | [data] control thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:16,909 | INFO     | [payload] validate_post thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:17,157 | INFO     | [data] copytool_out thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:17,190 | INFO     | [payload] failed_post thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:17,307 | INFO     | [data] copytool_in thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:17,348 | INFO     | [payload] control thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:17,507 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:17,525 | INFO     | [job] validate thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:17,598 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:20,012 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 11:43:19] 2026-01-09 10:42:44,991 | INFO     | PID=4366 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-09 11:43:19] 2026-01-09 10:42:44,992 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 11:43:19] 2026-01-09 10:42:44,992 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 11:43:19] 2026-01-09 10:42:44,992 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 11:43:19] 2026-01-09 10:43:12,106 | INFO     | [monitor] cgroup control has ended
[2026-01-09 11:43:19] 2026-01-09 10:43:14,187 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140372821002048)>', '<ExcThread(monitor, started 140372382562048)>']
[2026-01-09 11:43:19] 2026-01-09 10:43:15,144 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 11:43:19] 2026-01-09 10:43:15,144 | INFO     | [monitor] control thread has ended
[2026-01-09 11:43:19] 2026-01-09 10:43:19,212 | INFO     | all workflow threads have been joined
[2026-01-09 11:43:19] 2026-01-09 10:43:19,213 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 11:43:19] 2026-01-09 10:43:19,213 | INFO     | traces error code: 0
[2026-01-09 11:43:19] 2026-01-09 10:43:19,214 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 11:43:19] 2026-01-09 10:43:19,372 [wrapper] ==== pilot stdout END ====
[2026-01-09 11:43:19] 2026-01-09 10:43:19,379 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 11:43:19] 2026-01-09 10:43:19,386 [wrapper] pilotpid: 4366
[2026-01-09 11:43:19] 2026-01-09 10:43:19,394 [wrapper] Pilot exit status: 0
[2026-01-09 11:43:19] 2026-01-09 10:43:19,426 [wrapper] pandaids: 6963161134
[2026-01-09 11:43:19] 2026-01-09 10:43:19,498 [wrapper] cleanup supervisor_pilot 28157 4367
[2026-01-09 11:43:19] 2026-01-09 10:43:19,505 [wrapper] Test setup, not cleaning
[2026-01-09 11:43:19] 2026-01-09 10:43:19,509 [wrapper] apfmon messages muted
[2026-01-09 11:43:19] 2026-01-09 10:43:19,517 [wrapper] ==== wrapper stdout END ====
[2026-01-09 11:43:19] 2026-01-09 10:43:19,523 [wrapper] ==== wrapper stderr END ====
[2026-01-09 11:43:19]  *** Error codes and diagnostics ***
[2026-01-09 11:43:19]     "exeErrorCode": 0,
[2026-01-09 11:43:19]     "exeErrorDiag": "",
[2026-01-09 11:43:19]     "pilotErrorCode": 0,
[2026-01-09 11:43:19]     "pilotErrorDiag": "",
[2026-01-09 11:43:19]  *** Listing of results directory ***
[2026-01-09 11:43:19] total 445188
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 11:43:19] -rwx------. 1 boinc boinc     36322 Jan  8 22:46 runpilot2-wrapper.sh
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc      5112 Jan  8 22:47 queuedata.json
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc       100 Jan  9 08:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 11:43:19] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 08:50 run_atlas
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc       105 Jan  9 08:50 job.xml
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc      6388 Jan  9 08:50 init_data.xml
[2026-01-09 11:43:19] -rw-r--r--. 2 boinc boinc 225847090 Jan  9 08:50 EVNT.47898824._001269.pool.root.1
[2026-01-09 11:43:19] -rw-r--r--. 2 boinc boinc     15847 Jan  9 08:50 start_atlas.sh
[2026-01-09 11:43:19] drwxrwx--x. 2 boinc boinc        68 Jan  9 08:50 shared
[2026-01-09 11:43:19] -rw-r--r--. 2 boinc boinc    592399 Jan  9 08:50 input.tar.gz
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc         0 Jan  9 08:50 boinc_lockfile
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc      2520 Jan  9 08:50 pandaJob.out
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc    989771 Jan  9 08:50 agis_schedconf.cvmfs.json
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc   1516240 Jan  9 08:50 agis_ddmendpoints.agis.ALL.json
[2026-01-09 11:43:19] drwx------. 5 boinc boinc      4096 Jan  9 08:50 pilot3
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc 222560303 Jan  9 11:41 HITS.47898826._032843.pool.root.1
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc       531 Jan  9 11:41 boinc_task_state.xml
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc      1014 Jan  9 11:41 memory_monitor_summary.json
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc    408000 Jan  9 11:42 log.47898826._032843.job.log.tgz.1
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc        95 Jan  9 11:42 pilot_heartbeat.json
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc      7771 Jan  9 11:42 heartbeat.json
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc        28 Jan  9 11:43 wrapper_checkpoint.txt
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc      8192 Jan  9 11:43 boinc_mmap_file
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc      4808 Jan  9 11:43 pilotlog.txt
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc   1373246 Jan  9 11:43 log.47898826._032843.job.log.1
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc       357 Jan  9 11:43 output.list
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc       620 Jan  9 11:43 runtime_log
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc   1802240 Jan  9 11:43 result.tar.gz
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc      8817 Jan  9 11:43 runtime_log.err
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc       655 Jan  9 11:43 0B8MDm20Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNGgKDmQXFjWn.diag
[2026-01-09 11:43:19] -rw-r--r--. 1 boinc boinc     21095 Jan  9 11:43 stderr.txt
[2026-01-09 11:43:19] HITS file was successfully produced:
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc 222560303 Jan  9 11:41 shared/HITS.pool.root.1
[2026-01-09 11:43:19]  *** Contents of shared directory: ***
[2026-01-09 11:43:19] total 440260
[2026-01-09 11:43:19] -rw-r--r--. 2 boinc boinc 225847090 Jan  9 08:50 ATLAS.root_0
[2026-01-09 11:43:19] -rw-r--r--. 2 boinc boinc     15847 Jan  9 08:50 start_atlas.sh
[2026-01-09 11:43:19] -rw-r--r--. 2 boinc boinc    592399 Jan  9 08:50 input.tar.gz
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc 222560303 Jan  9 11:41 HITS.pool.root.1
[2026-01-09 11:43:19] -rw-------. 1 boinc boinc   1802240 Jan  9 11:43 result.tar.gz
11:43:21 (561): run_atlas exited; CPU time 76966.104625
11:43:21 (561): called boinc_finish(0)

</stderr_txt>
]]>

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