Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:40:34 (3375261): wrapper (7.7.26015): starting
16:40:34 (3375261): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 16:40:34] Arguments: --nthreads 3
[2026-01-09 16:40:34] Threads: 3
[2026-01-09 16:40:34] Checking for CVMFS
[2026-01-09 16:40:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:40:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:40:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:40:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:40:35] 2.9.2.0 2791136 2346 79744 154948 2 57 21426982 36864001 0 130560 0 1502657 99.989 87937 4922 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 16:40:35] CVMFS is ok
[2026-01-09 16:40:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:40:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:40:35] Further information can be found at the LHC@home message board.
[2026-01-09 16:40:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:40:35] Checking for apptainer binary...
[2026-01-09 16:40:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:40:35] Running /usr/bin/apptainer --version
[2026-01-09 16:40:35] apptainer version 1.4.1-1.1
[2026-01-09 16:40:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:40:35] thA337a
[2026-01-09 16:40:35] apptainer works
[2026-01-09 16:40:35] Set ATHENA_PROC_NUMBER=3
[2026-01-09 16:40:35] Set ATHENA_CORE_NUMBER=3
[2026-01-09 16:40:35] Starting ATLAS job with PandaID=6963160866
[2026-01-09 16:40:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:29:04]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:29:04] 2026-01-09 17:28:34,151 | INFO     | all data control threads have been joined
[2026-01-09 18:29:04] 2026-01-09 17:28:34,220 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:34,220 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:34,220 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:34,245 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:34,527 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:34,528 | INFO     | all payload control threads have been joined
[2026-01-09 18:29:04] 2026-01-09 17:28:34,609 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:29:04] 2026-01-09 17:28:34,630 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:35,025 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:29:04] 2026-01-09 17:28:35,054 | INFO     | [job] validate thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:35,055 | INFO     | [job] control thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:35,111 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:35,156 | INFO     | [data] control thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:35,211 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:35,264 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:35,534 | INFO     | [payload] control thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:36,615 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:39,033 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:44,125 | INFO     | job.realtimelogging is not enabled
[2026-01-09 18:29:04] 2026-01-09 17:28:45,130 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:29:04] 2026-01-09 17:28:48,611 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:29:04] 2026-01-09 17:28:49,011 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140122590025536)>', '<ExcThread(monitor, started 140121814849280)>']
[2026-01-09 18:29:04] 2026-01-09 17:28:54,036 | INFO     | all workflow threads have been joined
[2026-01-09 18:29:04] 2026-01-09 17:28:54,037 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:29:04] 2026-01-09 17:28:54,037 | INFO     | traces error code: 0
[2026-01-09 18:29:04] 2026-01-09 17:28:54,037 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:29:04] 2026-01-09 17:29:03,914 | INFO     | PID=3378982 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 18:29:04] 2026-01-09 17:29:03,914 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:29:04] 2026-01-09 17:29:03,914 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:29:04] 2026-01-09 17:29:03,914 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:29:04] 2026-01-09 17:29:03,914 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:29:04] 2026-01-09 17:29:03,914 | INFO     | [monitor] control thread has ended
[2026-01-09 18:29:04] 2026-01-09 17:29:03,960 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:29:04] 2026-01-09 17:29:03,962 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:29:04] 2026-01-09 17:29:03,964 [wrapper] pilotpid: 3378982
[2026-01-09 18:29:04] 2026-01-09 17:29:03,967 [wrapper] Pilot exit status: 0
[2026-01-09 18:29:04] 2026-01-09 17:29:03,974 [wrapper] pandaids: 6963160866
[2026-01-09 18:29:04] 2026-01-09 17:29:03,990 [wrapper] cleanup supervisor_pilot 3399811 3378983
[2026-01-09 18:29:04] 2026-01-09 17:29:03,992 [wrapper] Test setup, not cleaning
[2026-01-09 18:29:04] 2026-01-09 17:29:03,994 [wrapper] apfmon messages muted
[2026-01-09 18:29:04] 2026-01-09 17:29:03,997 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:29:04] 2026-01-09 17:29:03,999 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:29:04]  *** Error codes and diagnostics ***
[2026-01-09 18:29:04]     "exeErrorCode": 0,
[2026-01-09 18:29:04]     "exeErrorDiag": "",
[2026-01-09 18:29:04]     "pilotErrorCode": 0,
[2026-01-09 18:29:04]     "pilotErrorDiag": "",
[2026-01-09 18:29:04]  *** Listing of results directory ***
[2026-01-09 18:29:04] total 437768
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 18:29:04] -rwx------ 1 boinc boinc     36322 Jan  8 22:46 runpilot2-wrapper.sh
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:47 queuedata.json
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc       100 Jan  9 16:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:29:04] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 16:40 run_atlas
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc       105 Jan  9 16:40 job.xml
[2026-01-09 18:29:04] -rw-r--r-- 2 boinc boinc 223013485 Jan  9 16:40 EVNT.47898824._001263.pool.root.1
[2026-01-09 18:29:04] -rw-r--r-- 2 boinc boinc    592402 Jan  9 16:40 input.tar.gz
[2026-01-09 18:29:04] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:40 start_atlas.sh
[2026-01-09 18:29:04] drwxrwx--x 2 boinc boinc      4096 Jan  9 16:40 shared
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:40 boinc_setup_complete
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc      6446 Jan  9 16:40 init_data.xml
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:40 boinc_lockfile
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc      2520 Jan  9 16:40 pandaJob.out
[2026-01-09 18:29:04] -rw------- 1 boinc boinc    989377 Jan  9 16:40 agis_schedconf.cvmfs.json
[2026-01-09 18:29:04] -rw------- 1 boinc boinc   1516240 Jan  9 16:40 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:29:04] drwx------ 5 boinc boinc      4096 Jan  9 16:40 pilot3
[2026-01-09 18:29:04] -rw------- 1 boinc boinc 218930342 Jan  9 18:28 HITS.47898826._032689.pool.root.1
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc       529 Jan  9 18:28 boinc_task_state.xml
[2026-01-09 18:29:04] -rw------- 1 boinc boinc        95 Jan  9 18:28 pilot_heartbeat.json
[2026-01-09 18:29:04] -rw------- 1 boinc boinc      1015 Jan  9 18:28 memory_monitor_summary.json
[2026-01-09 18:29:04] -rw------- 1 boinc boinc    282615 Jan  9 18:28 log.47898826._032689.job.log.tgz.1
[2026-01-09 18:29:04] -rw------- 1 boinc boinc      7750 Jan  9 18:28 heartbeat.json
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc      8192 Jan  9 18:28 boinc_mmap_file
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc        27 Jan  9 18:28 wrapper_checkpoint.txt
[2026-01-09 18:29:04] -rw------- 1 boinc boinc       747 Jan  9 18:29 pilotlog.txt
[2026-01-09 18:29:04] -rw------- 1 boinc boinc    937657 Jan  9 18:29 log.47898826._032689.job.log.1
[2026-01-09 18:29:04] -rw------- 1 boinc boinc       357 Jan  9 18:29 output.list
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc       620 Jan  9 18:29 runtime_log
[2026-01-09 18:29:04] -rw------- 1 boinc boinc   1239040 Jan  9 18:29 result.tar.gz
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc      8902 Jan  9 18:29 runtime_log.err
[2026-01-09 18:29:04] -rw------- 1 boinc boinc       660 Jan  9 18:29 7llNDmq0Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBSlKDmRnOZWo.diag
[2026-01-09 18:29:04] -rw-r--r-- 1 boinc boinc      6860 Jan  9 18:29 stderr.txt
[2026-01-09 18:29:04] HITS file was successfully produced:
[2026-01-09 18:29:04] -rw------- 1 boinc boinc 218930342 Jan  9 18:28 shared/HITS.pool.root.1
[2026-01-09 18:29:04]  *** Contents of shared directory: ***
[2026-01-09 18:29:04] total 433404
[2026-01-09 18:29:04] -rw-r--r-- 2 boinc boinc 223013485 Jan  9 16:40 ATLAS.root_0
[2026-01-09 18:29:04] -rw-r--r-- 2 boinc boinc    592402 Jan  9 16:40 input.tar.gz
[2026-01-09 18:29:04] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:40 start_atlas.sh
[2026-01-09 18:29:04] -rw------- 1 boinc boinc 218930342 Jan  9 18:28 HITS.pool.root.1
[2026-01-09 18:29:04] -rw------- 1 boinc boinc   1239040 Jan  9 18:29 result.tar.gz
18:29:05 (3375261): run_atlas exited; CPU time 18728.610967
18:29:05 (3375261): called boinc_finish(0)

</stderr_txt>
]]>

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