Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:28:41 (1797820): wrapper (7.7.26015): starting
18:28:41 (1797820): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 18:28:41] Arguments: --nthreads 4
[2026-01-09 18:28:41] Threads: 4
[2026-01-09 18:28:41] Checking for CVMFS
[2026-01-09 18:28:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:28:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:28:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:28:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:28:41] 2.9.2.0 1035262 2457 94752 154951 2 56 21126257 36864000 0 130560 0 1727751 99.989 92076 4978 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 18:28:41] CVMFS is ok
[2026-01-09 18:28:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:28:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:28:41] Further information can be found at the LHC@home message board.
[2026-01-09 18:28:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:28:41] Checking for apptainer binary...
[2026-01-09 18:28:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:28:41] Running /usr/bin/apptainer --version
[2026-01-09 18:28:41] apptainer version 1.4.1-1.1
[2026-01-09 18:28:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:28:41] thA309
[2026-01-09 18:28:41] apptainer works
[2026-01-09 18:28:41] Set ATHENA_PROC_NUMBER=4
[2026-01-09 18:28:41] Set ATHENA_CORE_NUMBER=4
[2026-01-09 18:28:41] Starting ATLAS job with PandaID=6963156804
[2026-01-09 18:28:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:10:17]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:10:17] 2026-01-09 19:09:45,540 | INFO     | process IDs to be killed: [1808208] (in reverse order)
[2026-01-09 20:10:17] 2026-01-09 19:09:45,578 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:10:17] 2026-01-09 19:09:45,578 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:10:17] 2026-01-09 19:09:45,580 | INFO     | did not find any defunct processes belonging to 1808208
[2026-01-09 20:10:17] 2026-01-09 19:09:45,581 | INFO     | did not find any defunct processes belonging to 1808208
[2026-01-09 20:10:17] 2026-01-09 19:09:45,582 | INFO     | ready for new job
[2026-01-09 20:10:17] 2026-01-09 19:09:45,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:10:17] 2026-01-09 19:09:45,582 | INFO     | ***************************************
[2026-01-09 20:10:17] 2026-01-09 19:09:45,582 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:10:17] 2026-01-09 19:09:45,582 | INFO     | ***************************************
[2026-01-09 20:10:17] 2026-01-09 19:09:45,582 | INFO     | 
[2026-01-09 20:10:17] 2026-01-09 19:09:45,583 | INFO     | architecture information:
[2026-01-09 20:10:17] 2026-01-09 19:09:45,583 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:10:17] 2026-01-09 19:09:45,598 | INFO     | cat /etc/os-release:
[2026-01-09 20:10:17] NAME="CentOS Linux"
[2026-01-09 20:10:17] VERSION="7 (Core)"
[2026-01-09 20:10:17] ID="centos"
[2026-01-09 20:10:17] ID_LIKE="rhel fedora"
[2026-01-09 20:10:17] VERSION_ID="7"
[2026-01-09 20:10:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:10:17] ANSI_COLOR="0;31"
[2026-01-09 20:10:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:10:17] HOME_URL="https://www.centos.org/"
[2026-01-09 20:10:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:10:17] 
[2026-01-09 20:10:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:10:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:10:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:10:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:10:17] 
[2026-01-09 20:10:17] 2026-01-09 19:09:45,598 | INFO     | ***************************************
[2026-01-09 20:10:17] 2026-01-09 19:09:46,102 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 20:10:17] 2026-01-09 19:09:46,120 | INFO     | sufficient remaining disk space (238102249472 B)
[2026-01-09 20:10:17] 2026-01-09 19:09:46,120 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:10:17] 2026-01-09 19:09:46,120 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:10:17] 2026-01-09 19:09:46,120 | INFO     | update_server=False
[2026-01-09 20:10:17] 2026-01-09 19:09:46,121 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:10:17] 2026-01-09 19:09:46,121 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:10:17] 2026-01-09 19:09:46,121 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:10:17] 2026-01-09 19:09:46,351 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:10:17] 2026-01-09 19:09:46,351 | INFO     | aborting loop
[2026-01-09 20:10:17] 2026-01-09 19:09:46,556 | INFO     | all data control threads have been joined
[2026-01-09 20:10:17] 2026-01-09 19:09:46,811 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:10:17] 2026-01-09 19:09:47,126 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:47,127 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:47,155 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:47,340 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:47,357 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:47,459 | INFO     | all job control threads have been joined
[2026-01-09 20:10:17] 2026-01-09 19:09:47,516 | INFO     | all payload control threads have been joined
[2026-01-09 20:10:17] 2026-01-09 19:09:47,559 | INFO     | [data] control thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:47,611 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:47,619 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:47,831 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:48,104 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:48,465 | INFO     | [job] control thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:48,522 | INFO     | [payload] control thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:48,575 | INFO     | [job] validate thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:48,606 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:48,817 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:50,128 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:10:17] 2026-01-09 19:09:57,488 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:10:17] 2026-01-09 19:09:58,494 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140249515394880)>', '<ExcThread(monitor, started 140248734496512)>']
[2026-01-09 20:10:17] 2026-01-09 19:10:03,496 | INFO     | all workflow threads have been joined
[2026-01-09 20:10:17] 2026-01-09 19:10:03,497 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:10:17] 2026-01-09 19:10:03,497 | INFO     | traces error code: 0
[2026-01-09 20:10:17] 2026-01-09 19:10:03,497 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:10:17] 2026-01-09 19:10:16,863 | INFO     | PID=1801615 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:10:17] 2026-01-09 19:10:16,863 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:10:17] 2026-01-09 19:10:16,863 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:10:17] 2026-01-09 19:10:16,863 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:10:17] 2026-01-09 19:10:16,863 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:10:17] 2026-01-09 19:10:16,863 | INFO     | [monitor] control thread has ended
[2026-01-09 20:10:17] 2026-01-09 19:10:16,944 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:10:17] 2026-01-09 19:10:16,948 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:10:17] 2026-01-09 19:10:16,952 [wrapper] pilotpid: 1801615
[2026-01-09 20:10:17] 2026-01-09 19:10:16,956 [wrapper] Pilot exit status: 0
[2026-01-09 20:10:17] 2026-01-09 19:10:16,968 [wrapper] pandaids: 6963156804
[2026-01-09 20:10:17] 2026-01-09 19:10:16,992 [wrapper] cleanup supervisor_pilot 1823707 1801616
[2026-01-09 20:10:17] 2026-01-09 19:10:16,996 [wrapper] Test setup, not cleaning
[2026-01-09 20:10:17] 2026-01-09 19:10:17,000 [wrapper] apfmon messages muted
[2026-01-09 20:10:17] 2026-01-09 19:10:17,004 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:10:17] 2026-01-09 19:10:17,008 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:10:17]  *** Error codes and diagnostics ***
[2026-01-09 20:10:17]     "exeErrorCode": 0,
[2026-01-09 20:10:17]     "exeErrorDiag": "",
[2026-01-09 20:10:17]     "pilotErrorCode": 0,
[2026-01-09 20:10:17]     "pilotErrorDiag": "",
[2026-01-09 20:10:17]  *** Listing of results directory ***
[2026-01-09 20:10:17] total 441248
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-09 20:10:17] -rwx------ 1 boinc boinc     36322 Jan  8 22:45 runpilot2-wrapper.sh
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:45 queuedata.json
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc       100 Jan  9 18:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:10:17] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 18:28 run_atlas
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc       105 Jan  9 18:28 job.xml
[2026-01-09 20:10:17] -rw-r--r-- 2 boinc boinc 224123456 Jan  9 18:28 EVNT.47898824._001214.pool.root.1
[2026-01-09 20:10:17] -rw-r--r-- 2 boinc boinc    592402 Jan  9 18:28 input.tar.gz
[2026-01-09 20:10:17] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:28 start_atlas.sh
[2026-01-09 20:10:17] drwxrwx--x 2 boinc boinc      4096 Jan  9 18:28 shared
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:28 boinc_setup_complete
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc      6377 Jan  9 18:28 init_data.xml
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc         0 Jan  9 18:28 boinc_lockfile
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc      2520 Jan  9 18:28 pandaJob.out
[2026-01-09 20:10:17] -rw------- 1 boinc boinc    989356 Jan  9 18:28 agis_schedconf.cvmfs.json
[2026-01-09 20:10:17] -rw------- 1 boinc boinc   1516240 Jan  9 18:28 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:10:17] drwx------ 5 boinc boinc      4096 Jan  9 18:28 pilot3
[2026-01-09 20:10:17] -rw------- 1 boinc boinc 221500297 Jan  9 20:09 HITS.47898826._031953.pool.root.1
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc       529 Jan  9 20:09 boinc_task_state.xml
[2026-01-09 20:10:17] -rw------- 1 boinc boinc        95 Jan  9 20:09 pilot_heartbeat.json
[2026-01-09 20:10:17] -rw------- 1 boinc boinc      1022 Jan  9 20:09 memory_monitor_summary.json
[2026-01-09 20:10:17] -rw------- 1 boinc boinc    276672 Jan  9 20:09 log.47898826._031953.job.log.tgz.1
[2026-01-09 20:10:17] -rw------- 1 boinc boinc      7766 Jan  9 20:09 heartbeat.json
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc      8192 Jan  9 20:09 boinc_mmap_file
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc        27 Jan  9 20:09 wrapper_checkpoint.txt
[2026-01-09 20:10:17] -rw------- 1 boinc boinc       747 Jan  9 20:10 pilotlog.txt
[2026-01-09 20:10:17] -rw------- 1 boinc boinc    876891 Jan  9 20:10 log.47898826._031953.job.log.1
[2026-01-09 20:10:17] -rw------- 1 boinc boinc       357 Jan  9 20:10 output.list
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc       620 Jan  9 20:10 runtime_log
[2026-01-09 20:10:17] -rw------- 1 boinc boinc   1177600 Jan  9 20:10 result.tar.gz
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc      8897 Jan  9 20:10 runtime_log.err
[2026-01-09 20:10:17] -rw------- 1 boinc boinc       659 Jan  9 20:10 Z7KKDmP0Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRBgKDm9GeB6m.diag
[2026-01-09 20:10:17] -rw-r--r-- 1 boinc boinc     10083 Jan  9 20:10 stderr.txt
[2026-01-09 20:10:17] HITS file was successfully produced:
[2026-01-09 20:10:17] -rw------- 1 boinc boinc 221500297 Jan  9 20:09 shared/HITS.pool.root.1
[2026-01-09 20:10:17]  *** Contents of shared directory: ***
[2026-01-09 20:10:17] total 436940
[2026-01-09 20:10:17] -rw-r--r-- 2 boinc boinc 224123456 Jan  9 18:28 ATLAS.root_0
[2026-01-09 20:10:17] -rw-r--r-- 2 boinc boinc    592402 Jan  9 18:28 input.tar.gz
[2026-01-09 20:10:17] -rw-r--r-- 2 boinc boinc     15847 Jan  9 18:28 start_atlas.sh
[2026-01-09 20:10:17] -rw------- 1 boinc boinc 221500297 Jan  9 20:09 HITS.pool.root.1
[2026-01-09 20:10:17] -rw------- 1 boinc boinc   1177600 Jan  9 20:10 result.tar.gz
20:10:18 (1797820): run_atlas exited; CPU time 23028.569425
20:10:18 (1797820): called boinc_finish(0)

</stderr_txt>
]]>

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