Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:25:54 (2939560): wrapper (7.7.26015): starting
16:25:54 (2939560): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 16:25:54] Arguments: --nthreads 3
[2026-01-09 16:25:54] Threads: 3
[2026-01-09 16:25:54] Checking for CVMFS
[2026-01-09 16:25:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:25:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:25:54] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:25:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:25:54] 2.9.2.0 2245490 2846 85256 154948 3 56 34903901 36864001 0 130560 0 1828534 99.988 109758 4247 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 16:25:54] CVMFS is ok
[2026-01-09 16:25:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:25:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:25:54] Further information can be found at the LHC@home message board.
[2026-01-09 16:25:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:25:54] Checking for apptainer binary...
[2026-01-09 16:25:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:25:54] Running /usr/bin/apptainer --version
[2026-01-09 16:25:54] apptainer version 1.4.1-1.1
[2026-01-09 16:25:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:25:54] thA331a
[2026-01-09 16:25:54] apptainer works
[2026-01-09 16:25:54] Set ATHENA_PROC_NUMBER=3
[2026-01-09 16:25:54] Set ATHENA_CORE_NUMBER=3
[2026-01-09 16:25:54] Starting ATLAS job with PandaID=6963147642
[2026-01-09 16:25:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:23:15]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:23:15] 2026-01-09 17:22:33,141 | INFO     | collected zombie processes
[2026-01-09 18:23:15] 2026-01-09 17:22:33,141 | INFO     | will attempt to kill all subprocesses of pid=2949719
[2026-01-09 18:23:15] 2026-01-09 17:22:33,183 | INFO     | process IDs to be killed: [2949719] (in reverse order)
[2026-01-09 18:23:15] 2026-01-09 17:22:33,205 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 18:23:15] 2026-01-09 17:22:33,206 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 18:23:15] 2026-01-09 17:22:33,207 | INFO     | did not find any defunct processes belonging to 2949719
[2026-01-09 18:23:15] 2026-01-09 17:22:33,208 | INFO     | did not find any defunct processes belonging to 2949719
[2026-01-09 18:23:15] 2026-01-09 17:22:33,208 | INFO     | ready for new job
[2026-01-09 18:23:15] 2026-01-09 17:22:33,208 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 18:23:15] 2026-01-09 17:22:33,209 | INFO     | ***************************************
[2026-01-09 18:23:15] 2026-01-09 17:22:33,209 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 18:23:15] 2026-01-09 17:22:33,209 | INFO     | ***************************************
[2026-01-09 18:23:15] 2026-01-09 17:22:33,209 | INFO     | 
[2026-01-09 18:23:15] 2026-01-09 17:22:33,209 | INFO     | architecture information:
[2026-01-09 18:23:15] 2026-01-09 17:22:33,209 | INFO     | executing command: cat /etc/os-release
[2026-01-09 18:23:15] 2026-01-09 17:22:33,218 | INFO     | cat /etc/os-release:
[2026-01-09 18:23:15] NAME="CentOS Linux"
[2026-01-09 18:23:15] VERSION="7 (Core)"
[2026-01-09 18:23:15] ID="centos"
[2026-01-09 18:23:15] ID_LIKE="rhel fedora"
[2026-01-09 18:23:15] VERSION_ID="7"
[2026-01-09 18:23:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 18:23:15] ANSI_COLOR="0;31"
[2026-01-09 18:23:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 18:23:15] HOME_URL="https://www.centos.org/"
[2026-01-09 18:23:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 18:23:15] 
[2026-01-09 18:23:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 18:23:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 18:23:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 18:23:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 18:23:15] 
[2026-01-09 18:23:15] 2026-01-09 17:22:33,218 | INFO     | ***************************************
[2026-01-09 18:23:15] 2026-01-09 17:22:33,721 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 18:23:15] 2026-01-09 17:22:33,734 | INFO     | sufficient remaining disk space (325118328832 B)
[2026-01-09 18:23:15] 2026-01-09 17:22:33,734 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 18:23:15] 2026-01-09 17:22:33,734 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 18:23:15] 2026-01-09 17:22:33,734 | INFO     | update_server=False
[2026-01-09 18:23:15] 2026-01-09 17:22:33,734 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 18:23:15] 2026-01-09 17:22:33,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:23:15] 2026-01-09 17:22:33,744 | INFO     | all data control threads have been joined
[2026-01-09 18:23:15] 2026-01-09 17:22:34,048 | INFO     | all job control threads have been joined
[2026-01-09 18:23:15] 2026-01-09 17:22:34,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:23:15] 2026-01-09 17:22:34,675 | INFO     | aborting loop
[2026-01-09 18:23:15] 2026-01-09 17:22:34,740 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:34,740 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:34,749 | INFO     | [data] control thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:34,919 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:23:15] 2026-01-09 17:22:35,035 | INFO     | all payload control threads have been joined
[2026-01-09 18:23:15] 2026-01-09 17:22:35,053 | INFO     | [job] control thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:35,063 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:35,485 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:35,593 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:35,681 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:35,797 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:35,887 | INFO     | [job] validate thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:35,896 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:36,014 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:36,041 | INFO     | [payload] control thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:36,331 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:36,773 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:23:15] 2026-01-09 17:22:36,926 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:22:40,780 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:23:15] 2026-01-09 17:23:03,805 | INFO     | PID=2943278 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 18:23:15] 2026-01-09 17:23:03,806 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:23:15] 2026-01-09 17:23:03,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:23:15] 2026-01-09 17:23:03,806 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:23:15] 2026-01-09 17:23:08,095 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:23:15] 2026-01-09 17:23:09,969 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140076705658688)>', '<ExcThread(monitor, started 140076348577536)>']
[2026-01-09 18:23:15] 2026-01-09 17:23:10,843 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:23:15] 2026-01-09 17:23:10,843 | INFO     | [monitor] control thread has ended
[2026-01-09 18:23:15] 2026-01-09 17:23:14,970 | INFO     | all workflow threads have been joined
[2026-01-09 18:23:15] 2026-01-09 17:23:14,971 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:23:15] 2026-01-09 17:23:14,971 | INFO     | traces error code: 0
[2026-01-09 18:23:15] 2026-01-09 17:23:14,971 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:23:15] 2026-01-09 17:23:15,020 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:23:15] 2026-01-09 17:23:15,023 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:23:15] 2026-01-09 17:23:15,025 [wrapper] pilotpid: 2943278
[2026-01-09 18:23:15] 2026-01-09 17:23:15,027 [wrapper] Pilot exit status: 0
[2026-01-09 18:23:15] 2026-01-09 17:23:15,033 [wrapper] pandaids: 6963147642
[2026-01-09 18:23:15] 2026-01-09 17:23:15,049 [wrapper] cleanup supervisor_pilot 2964200 2943279
[2026-01-09 18:23:15] 2026-01-09 17:23:15,052 [wrapper] Test setup, not cleaning
[2026-01-09 18:23:15] 2026-01-09 17:23:15,054 [wrapper] apfmon messages muted
[2026-01-09 18:23:15] 2026-01-09 17:23:15,056 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:23:15] 2026-01-09 17:23:15,059 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:23:15]  *** Error codes and diagnostics ***
[2026-01-09 18:23:15]     "exeErrorCode": 0,
[2026-01-09 18:23:15]     "exeErrorDiag": "",
[2026-01-09 18:23:15]     "pilotErrorCode": 0,
[2026-01-09 18:23:15]     "pilotErrorDiag": "",
[2026-01-09 18:23:15]  *** Listing of results directory ***
[2026-01-09 18:23:15] total 445064
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc    579449 Jan  8 17:02 pilot3.tar.gz
[2026-01-09 18:23:15] -rwx------ 1 boinc boinc     36322 Jan  8 17:05 runpilot2-wrapper.sh
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc      5112 Jan  8 17:07 queuedata.json
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc       100 Jan  9 16:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:23:15] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 16:25 run_atlas
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc       105 Jan  9 16:25 job.xml
[2026-01-09 18:23:15] -rw-r--r-- 2 boinc boinc 225756203 Jan  9 16:25 EVNT.47898824._000816.pool.root.1
[2026-01-09 18:23:15] -rw-r--r-- 2 boinc boinc    592403 Jan  9 16:25 input.tar.gz
[2026-01-09 18:23:15] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:25 start_atlas.sh
[2026-01-09 18:23:15] drwxrwx--x 2 boinc boinc      4096 Jan  9 16:25 shared
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:25 boinc_setup_complete
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc      6441 Jan  9 16:25 init_data.xml
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:25 boinc_lockfile
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc      2519 Jan  9 16:25 pandaJob.out
[2026-01-09 18:23:15] -rw------- 1 boinc boinc    989377 Jan  9 16:25 agis_schedconf.cvmfs.json
[2026-01-09 18:23:15] -rw------- 1 boinc boinc   1516240 Jan  9 16:25 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:23:15] drwx------ 5 boinc boinc      4096 Jan  9 16:26 pilot3
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc       529 Jan  9 18:22 boinc_task_state.xml
[2026-01-09 18:23:15] -rw------- 1 boinc boinc 223504085 Jan  9 18:22 HITS.47898826._027760.pool.root.1
[2026-01-09 18:23:15] -rw------- 1 boinc boinc      1016 Jan  9 18:22 memory_monitor_summary.json
[2026-01-09 18:23:15] -rw------- 1 boinc boinc    282142 Jan  9 18:22 log.47898826._027760.job.log.tgz.1
[2026-01-09 18:23:15] -rw------- 1 boinc boinc      7758 Jan  9 18:22 heartbeat.json
[2026-01-09 18:23:15] -rw------- 1 boinc boinc        95 Jan  9 18:23 pilot_heartbeat.json
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc      8192 Jan  9 18:23 boinc_mmap_file
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc        27 Jan  9 18:23 wrapper_checkpoint.txt
[2026-01-09 18:23:15] -rw------- 1 boinc boinc      4752 Jan  9 18:23 pilotlog.txt
[2026-01-09 18:23:15] -rw------- 1 boinc boinc   1007842 Jan  9 18:23 log.47898826._027760.job.log.1
[2026-01-09 18:23:15] -rw------- 1 boinc boinc       357 Jan  9 18:23 output.list
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc       620 Jan  9 18:23 runtime_log
[2026-01-09 18:23:15] -rw------- 1 boinc boinc   1310720 Jan  9 18:23 result.tar.gz
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc      8902 Jan  9 18:23 runtime_log.err
[2026-01-09 18:23:15] -rw------- 1 boinc boinc       660 Jan  9 18:23 8o1MDm1g7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6mfKDm4IEv8n.diag
[2026-01-09 18:23:15] -rw-r--r-- 1 boinc boinc     10283 Jan  9 18:23 stderr.txt
[2026-01-09 18:23:15] HITS file was successfully produced:
[2026-01-09 18:23:15] -rw------- 1 boinc boinc 223504085 Jan  9 18:22 shared/HITS.pool.root.1
[2026-01-09 18:23:15]  *** Contents of shared directory: ***
[2026-01-09 18:23:15] total 440620
[2026-01-09 18:23:15] -rw-r--r-- 2 boinc boinc 225756203 Jan  9 16:25 ATLAS.root_0
[2026-01-09 18:23:15] -rw-r--r-- 2 boinc boinc    592403 Jan  9 16:25 input.tar.gz
[2026-01-09 18:23:15] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:25 start_atlas.sh
[2026-01-09 18:23:15] -rw------- 1 boinc boinc 223504085 Jan  9 18:22 HITS.pool.root.1
[2026-01-09 18:23:15] -rw------- 1 boinc boinc   1310720 Jan  9 18:23 result.tar.gz
18:23:16 (2939560): run_atlas exited; CPU time 20252.792443
18:23:16 (2939560): called boinc_finish(0)

</stderr_txt>
]]>

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