Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:19:00 (20058): wrapper (7.7.26015): starting
07:19:00 (20058): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 07:19:00] Arguments: --nthreads 8
[2026-01-09 07:19:00] Threads: 8
[2026-01-09 07:19:00] Checking for CVMFS
[2026-01-09 07:19:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:19:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:19:00] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:19:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:19:01] 2.11.2.0 773 35028 114324 154934 2 56 16498944 25165824 0 130560 0 15752541 99.777 10738238 4187 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 07:19:01] CVMFS is ok
[2026-01-09 07:19:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:19:01] Checking for apptainer binary...
[2026-01-09 07:19:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:19:01] Running /usr/bin/apptainer --version
[2026-01-09 07:19:01] apptainer version 1.3.2-1.el7
[2026-01-09 07:19:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:19:02] cg-vwn384.simple-grid.lan
[2026-01-09 07:19:02] apptainer works
[2026-01-09 07:19:02] Set ATHENA_PROC_NUMBER=8
[2026-01-09 07:19:02] Set ATHENA_CORE_NUMBER=8
[2026-01-09 07:19:02] Starting ATLAS job with PandaID=6963151485
[2026-01-09 07:19:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 10:07:42]  *** The last 200 lines of the pilot log: ***
[2026-01-09 10:07:42] 2026-01-09 09:06:34,789 | INFO     | time since job start (10035s) is within the limit (349056.0s)
[2026-01-09 10:07:42] 2026-01-09 09:06:36,791 | INFO     | time since job start (10037s) is within the limit (349056.0s)
[2026-01-09 10:07:42] 2026-01-09 09:06:37,066 | INFO     | monitor loop #688: job 0:6963151485 is in state 'finished'
[2026-01-09 10:07:42] 2026-01-09 09:06:37,066 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 10:07:42] 2026-01-09 09:06:38,796 | INFO     | time since job start (10039s) is within the limit (349056.0s)
[2026-01-09 10:07:42] 2026-01-09 09:06:39,569 | INFO     | monitor loop #689: job 0:6963151485 is in state 'finished'
[2026-01-09 10:07:42] 2026-01-09 09:06:39,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 10:07:42] 2026-01-09 09:06:39,791 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 10:07:42] 2026-01-09 09:06:39,793 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 10:07:42] 2026-01-09 09:06:39,795 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6963151485/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 10:07:42] 2026-01-09 09:06:39,796 | INFO     | extracted standard info from prmon json
[2026-01-09 10:07:42] 2026-01-09 09:06:39,796 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 10:07:42] 2026-01-09 09:06:39,797 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 10:07:42] 2026-01-09 09:06:39,797 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 10:07:42] 2026-01-09 09:06:39,797 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 10:07:42] 2026-01-09 09:06:39,801 | INFO     | fitting pss+swap vs Time
[2026-01-09 10:07:42] 2026-01-09 09:06:39,802 | INFO     | sum of square deviations: 1367709365.0
[2026-01-09 10:07:42] 2026-01-09 09:06:39,803 | INFO     | sum of deviations: -8018878555.5
[2026-01-09 10:07:42] 2026-01-09 09:06:39,803 | INFO     | mean x: 1767944563.5
[2026-01-09 10:07:42] 2026-01-09 09:06:39,804 | INFO     | mean y: 2544358.8597560977
[2026-01-09 10:07:42] 2026-01-09 09:06:39,804 | INFO     | intersect: 10368001458.41172
[2026-01-09 10:07:42] 2026-01-09 09:06:39,804 | INFO     | chi2: 1.7196446004929986
[2026-01-09 10:07:42] 2026-01-09 09:06:39,805 | INFO     | sum of square deviations: 1246386160.0
[2026-01-09 10:07:42] 2026-01-09 09:06:39,806 | INFO     | sum of deviations: -7315587320.999994
[2026-01-09 10:07:42] 2026-01-09 09:06:39,806 | INFO     | mean x: 1767944411.0
[2026-01-09 10:07:42] 2026-01-09 09:06:39,806 | INFO     | mean y: 2545243.176100629
[2026-01-09 10:07:42] 2026-01-09 09:06:39,806 | INFO     | intersect: 10379386813.163048
[2026-01-09 10:07:42] 2026-01-09 09:06:39,807 | INFO     | chi2: 1.7196183088336887
[2026-01-09 10:07:42] 2026-01-09 09:06:39,807 | INFO     | current chi2=1.7196183088336887 (change=0.0015289007567237218 %)
[2026-01-09 10:07:42] 2026-01-09 09:06:39,807 | INFO     | right removable region: 158
[2026-01-09 10:07:42] 2026-01-09 09:06:39,807 | INFO     | sum of square deviations: 1246386160.0
[2026-01-09 10:07:42] 2026-01-09 09:06:39,808 | INFO     | sum of deviations: -33913730556.0
[2026-01-09 10:07:42] 2026-01-09 09:06:39,809 | INFO     | mean x: 1767944716.0
[2026-01-09 10:07:42] 2026-01-09 09:06:39,809 | INFO     | mean y: 2576464.6415094337
[2026-01-09 10:07:42] 2026-01-09 09:06:39,809 | INFO     | intersect: 48107732523.44109
[2026-01-09 10:07:42] 2026-01-09 09:06:39,809 | INFO     | chi2: 0.17301222119269677
[2026-01-09 10:07:42] 2026-01-09 09:06:39,809 | INFO     | current chi2=0.17301222119269677 (change=89.9390710648528 %)
[2026-01-09 10:07:42] 2026-01-09 09:06:39,810 | INFO     | sum of square deviations: 1132458442.5
[2026-01-09 10:07:42] 2026-01-09 09:06:39,811 | INFO     | sum of deviations: -33622993027.0
[2026-01-09 10:07:42] 2026-01-09 09:06:39,811 | INFO     | mean x: 1767944868.5
[2026-01-09 10:07:42] 2026-01-09 09:06:39,811 | INFO     | mean y: 2575999.727272727
[2026-01-09 10:07:42] 2026-01-09 09:06:39,811 | INFO     | intersect: 52493330410.51964
[2026-01-09 10:07:42] 2026-01-09 09:06:39,812 | INFO     | chi2: 0.14812603751398085
[2026-01-09 10:07:42] 2026-01-09 09:06:39,812 | INFO     | current chi2=0.14812603751398085 (change=14.384061141552712 %)
[2026-01-09 10:07:42] 2026-01-09 09:06:39,812 | INFO     | left removable region: 20
[2026-01-09 10:07:42] 2026-01-09 09:06:39,813 | INFO     | sum of square deviations: 814878534.5
[2026-01-09 10:07:42] 2026-01-09 09:06:39,814 | INFO     | sum of deviations: -23574189137.0
[2026-01-09 10:07:42] 2026-01-09 09:06:39,814 | INFO     | mean x: 1767944990.5
[2026-01-09 10:07:42] 2026-01-09 09:06:39,814 | INFO     | mean y: 2564956.1304347827
[2026-01-09 10:07:42] 2026-01-09 09:06:39,814 | INFO     | intersect: 51148677935.32643
[2026-01-09 10:07:42] 2026-01-09 09:06:39,814 | INFO     | chi2: 0.136984842991191
[2026-01-09 10:07:42] 2026-01-09 09:06:39,815 | INFO     | current memory leak: -28.93 B/s (using 138 data points, chi2=0.14)
[2026-01-09 10:07:42] 2026-01-09 09:06:39,815 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-01-09 10:07:42] 2026-01-09 09:06:39,815 | INFO     | ..............................
[2026-01-09 10:07:42] 2026-01-09 09:06:39,815 | INFO     | . Timing measurements:
[2026-01-09 10:07:42] 2026-01-09 09:06:39,816 | INFO     | . get job = 0 s
[2026-01-09 10:07:42] 2026-01-09 09:06:39,816 | INFO     | . initial setup = 2 s
[2026-01-09 10:07:42] 2026-01-09 09:06:39,816 | INFO     | . payload setup = 7 s
[2026-01-09 10:07:42] 2026-01-09 09:06:39,816 | INFO     | . stage-in = 0 s
[2026-01-09 10:07:42] 2026-01-09 09:06:39,816 | INFO     | . payload execution = 9999 s
[2026-01-09 10:07:42] 2026-01-09 09:06:39,816 | INFO     | . stage-out = 1 s
[2026-01-09 10:07:42] 2026-01-09 09:06:39,816 | INFO     | . log creation = 0 s
[2026-01-09 10:07:42] 2026-01-09 09:06:39,816 | INFO     | ..............................
[2026-01-09 10:07:42] 2026-01-09 09:06:40,295 | INFO     | 
[2026-01-09 10:07:42] 2026-01-09 09:06:40,295 | INFO     | job summary report
[2026-01-09 10:07:42] 2026-01-09 09:06:40,295 | INFO     | --------------------------------------------------
[2026-01-09 10:07:42] 2026-01-09 09:06:40,295 | INFO     | PanDA job id: 6963151485
[2026-01-09 10:07:42] 2026-01-09 09:06:40,295 | INFO     | task id: 47898826
[2026-01-09 10:07:42] 2026-01-09 09:06:40,295 | INFO     | errors: (none)
[2026-01-09 10:07:42] 2026-01-09 09:06:40,296 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 10:07:42] 2026-01-09 09:06:40,296 | INFO     | pilot state: finished 
[2026-01-09 10:07:42] 2026-01-09 09:06:40,296 | INFO     | transexitcode: 0
[2026-01-09 10:07:42] 2026-01-09 09:06:40,296 | INFO     | exeerrorcode: 0
[2026-01-09 10:07:42] 2026-01-09 09:06:40,296 | INFO     | exeerrordiag: 
[2026-01-09 10:07:42] 2026-01-09 09:06:40,296 | INFO     | exitcode: 0
[2026-01-09 10:07:42] 2026-01-09 09:06:40,296 | INFO     | exitmsg: OK
[2026-01-09 10:07:42] 2026-01-09 09:06:40,296 | INFO     | cpuconsumptiontime: 75462 s
[2026-01-09 10:07:42] 2026-01-09 09:06:40,296 | INFO     | nevents: 400
[2026-01-09 10:07:42] 2026-01-09 09:06:40,297 | INFO     | neventsw: 0
[2026-01-09 10:07:42] 2026-01-09 09:06:40,297 | INFO     | pid: 30217
[2026-01-09 10:07:42] 2026-01-09 09:06:40,297 | INFO     | pgrp: 30217
[2026-01-09 10:07:42] 2026-01-09 09:06:40,297 | INFO     | corecount: 8
[2026-01-09 10:07:42] 2026-01-09 09:06:40,297 | INFO     | event service: False
[2026-01-09 10:07:42] 2026-01-09 09:06:40,297 | INFO     | sizes: {0: 2283739, 1: 2283994, 6: 2284256, 12: 2284284, 10011: 2312653, 10013: 2321653, 10015: 2321837, 10023: 2322095}
[2026-01-09 10:07:42] 2026-01-09 09:06:40,297 | INFO     | --------------------------------------------------
[2026-01-09 10:07:42] 2026-01-09 09:06:40,298 | INFO     | 
[2026-01-09 10:07:42] 2026-01-09 09:06:40,298 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2026-01-09 10:07:42] 2026-01-09 09:06:40,323 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,324 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,324 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,324 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,324 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,324 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,324 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,324 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,324 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,325 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,325 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,325 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,325 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,325 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,325 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,325 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,325 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,326 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 10:07:42] 2026-01-09 09:06:40,326 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,326 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 10:07:42] 2026-01-09 09:06:40,326 | INFO     | job 6963151485 has completed (purged errors)
[2026-01-09 10:07:42] 2026-01-09 09:06:40,326 | INFO     | overall cleanup function is called
[2026-01-09 10:07:42] 2026-01-09 09:06:41,333 | INFO     | --- collectZombieJob: --- 10, [30217]
[2026-01-09 10:07:42] 2026-01-09 09:06:41,334 | INFO     | zombie collector waiting for pid 30217
[2026-01-09 10:07:42] 2026-01-09 09:06:41,334 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 10:07:42] 2026-01-09 09:06:41,334 | INFO     | collected zombie processes
[2026-01-09 10:07:42] 2026-01-09 09:06:41,334 | INFO     | will attempt to kill all subprocesses of pid=30217
[2026-01-09 10:07:42] 2026-01-09 09:06:41,400 | INFO     | process IDs to be killed: [30217] (in reverse order)
[2026-01-09 10:07:42] 2026-01-09 09:06:41,447 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 10:07:42] 2026-01-09 09:06:41,448 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 10:07:42] 2026-01-09 09:06:41,450 | INFO     | did not find any defunct processes belonging to 30217
[2026-01-09 10:07:42] 2026-01-09 09:06:41,452 | INFO     | did not find any defunct processes belonging to 30217
[2026-01-09 10:07:42] 2026-01-09 09:06:41,452 | INFO     | ready for new job
[2026-01-09 10:07:42] 2026-01-09 09:06:41,452 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 10:07:42] 2026-01-09 09:06:41,454 | INFO     | ***************************************
[2026-01-09 10:07:42] 2026-01-09 09:06:41,454 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 10:07:42] 2026-01-09 09:06:41,454 | INFO     | ***************************************
[2026-01-09 10:07:42] 2026-01-09 09:06:41,454 | INFO     | 
[2026-01-09 10:07:42] 2026-01-09 09:06:41,455 | INFO     | pilot is running in a VM
[2026-01-09 10:07:42] 2026-01-09 09:06:41,455 | INFO     | architecture information:
[2026-01-09 10:07:42] 2026-01-09 09:06:41,456 | INFO     | executing command: cat /etc/os-release
[2026-01-09 10:07:42] 2026-01-09 09:06:41,479 | INFO     | cat /etc/os-release:
[2026-01-09 10:07:42] NAME="CentOS Linux"
[2026-01-09 10:07:42] VERSION="7 (Core)"
[2026-01-09 10:07:42] ID="centos"
[2026-01-09 10:07:42] ID_LIKE="rhel fedora"
[2026-01-09 10:07:42] VERSION_ID="7"
[2026-01-09 10:07:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 10:07:42] ANSI_COLOR="0;31"
[2026-01-09 10:07:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 10:07:42] HOME_URL="https://www.centos.org/"
[2026-01-09 10:07:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 10:07:42] 
[2026-01-09 10:07:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 10:07:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 10:07:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 10:07:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 10:07:42] 
[2026-01-09 10:07:42] 2026-01-09 09:06:41,479 | INFO     | ***************************************
[2026-01-09 10:07:42] 2026-01-09 09:06:41,983 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2026-01-09 10:07:42] 2026-01-09 09:06:42,007 | INFO     | sufficient remaining disk space (498099814400 B)
[2026-01-09 10:07:42] 2026-01-09 09:06:42,008 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 10:07:42] 2026-01-09 09:06:42,008 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 10:07:42] 2026-01-09 09:06:42,008 | INFO     | update_server=False
[2026-01-09 10:07:42] 2026-01-09 09:06:42,008 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 10:07:42] 2026-01-09 09:06:42,073 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 10:07:42] 2026-01-09 09:06:42,073 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 10:07:42] 2026-01-09 09:06:42,073 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 10:07:42] 2026-01-09 09:06:42,074 | INFO     | will abort loop
[2026-01-09 10:07:42] 2026-01-09 09:06:42,146 | INFO     | all payload control threads have been joined
[2026-01-09 10:07:42] 2026-01-09 09:06:42,278 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 10:07:42] 2026-01-09 09:06:42,456 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 10:07:42] 2026-01-09 09:06:42,811 | INFO     | all data control threads have been joined
[2026-01-09 10:07:42] 2026-01-09 09:06:43,014 | INFO     | [job] retrieve thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:43,079 | INFO     | [job] job monitor thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:43,134 | INFO     | [payload] validate_post thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:43,152 | INFO     | [payload] control thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:43,321 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:43,354 | INFO     | all job control threads have been joined
[2026-01-09 10:07:42] 2026-01-09 09:06:43,557 | INFO     | [payload] failed_post thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:43,562 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:43,816 | INFO     | [data] control thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:43,964 | INFO     | [job] validate thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:44,058 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:44,148 | INFO     | [data] copytool_in thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:44,284 | INFO     | [data] copytool_out thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:44,314 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:44,359 | INFO     | [job] control thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:44,947 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 10:07:42] 2026-01-09 09:06:45,953 | INFO     | [job] queue monitor thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:06:46,462 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 10:07:42] 2026-01-09 09:07:11,907 | INFO     | PID=23775 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 10:07:42] 2026-01-09 09:07:11,907 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 10:07:42] 2026-01-09 09:07:11,908 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 10:07:42] 2026-01-09 09:07:11,908 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 10:07:42] 2026-01-09 09:07:36,339 | INFO     | [monitor] cgroup control has ended
[2026-01-09 10:07:42] 2026-01-09 09:07:37,270 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139693783004992)>', '<ExcThread(monitor, started 139693173749504)>']
[2026-01-09 10:07:42] 2026-01-09 09:07:38,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 10:07:42] 2026-01-09 09:07:38,042 | INFO     | [monitor] control thread has ended
[2026-01-09 10:07:42] 2026-01-09 09:07:42,296 | INFO     | all workflow threads have been joined
[2026-01-09 10:07:42] 2026-01-09 09:07:42,296 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 10:07:42] 2026-01-09 09:07:42,296 | INFO     | traces error code: 0
[2026-01-09 10:07:42] 2026-01-09 09:07:42,297 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 10:07:42] 2026-01-09 09:07:42,442 [wrapper] ==== pilot stdout END ====
[2026-01-09 10:07:42] 2026-01-09 09:07:42,447 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 10:07:42] 2026-01-09 09:07:42,450 [wrapper] pilotpid: 23775
[2026-01-09 10:07:42] 2026-01-09 09:07:42,454 [wrapper] Pilot exit status: 0
[2026-01-09 10:07:42] 2026-01-09 09:07:42,475 [wrapper] pandaids: 6963151485
[2026-01-09 10:07:42] 2026-01-09 09:07:42,512 [wrapper] cleanup supervisor_pilot 16733 23776
[2026-01-09 10:07:42] 2026-01-09 09:07:42,518 [wrapper] Test setup, not cleaning
[2026-01-09 10:07:42] 2026-01-09 09:07:42,522 [wrapper] apfmon messages muted
[2026-01-09 10:07:42] 2026-01-09 09:07:42,526 [wrapper] ==== wrapper stdout END ====
[2026-01-09 10:07:42] 2026-01-09 09:07:42,530 [wrapper] ==== wrapper stderr END ====
[2026-01-09 10:07:42]  *** Error codes and diagnostics ***
[2026-01-09 10:07:42]     "exeErrorCode": 0,
[2026-01-09 10:07:42]     "exeErrorDiag": "",
[2026-01-09 10:07:42]     "pilotErrorCode": 0,
[2026-01-09 10:07:42]     "pilotErrorDiag": "",
[2026-01-09 10:07:42]  *** Listing of results directory ***
[2026-01-09 10:07:42] total 447992
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc      5112 Jan  8 17:02 queuedata.json
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc    579449 Jan  8 17:02 pilot3.tar.gz
[2026-01-09 10:07:42] -rwx------. 1 boinc boinc     36322 Jan  8 17:02 runpilot2-wrapper.sh
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc       100 Jan  9 07:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 10:07:42] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 07:19 run_atlas
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc       105 Jan  9 07:19 job.xml
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc      6390 Jan  9 07:19 init_data.xml
[2026-01-09 10:07:42] -rw-r--r--. 2 boinc boinc 226519136 Jan  9 07:19 EVNT.47898824._001093.pool.root.1
[2026-01-09 10:07:42] -rw-r--r--. 2 boinc boinc     15847 Jan  9 07:19 start_atlas.sh
[2026-01-09 10:07:42] drwxrwx--x. 2 boinc boinc        68 Jan  9 07:19 shared
[2026-01-09 10:07:42] -rw-r--r--. 2 boinc boinc    592397 Jan  9 07:19 input.tar.gz
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc         0 Jan  9 07:19 boinc_lockfile
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc      2517 Jan  9 07:19 pandaJob.out
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc    989771 Jan  9 07:19 agis_schedconf.cvmfs.json
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc   1516240 Jan  9 07:19 agis_ddmendpoints.agis.ALL.json
[2026-01-09 10:07:42] drwx------. 5 boinc boinc      4096 Jan  9 07:19 pilot3
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc 224860808 Jan  9 10:05 HITS.47898826._028523.pool.root.1
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc       531 Jan  9 10:05 boinc_task_state.xml
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc        95 Jan  9 10:06 pilot_heartbeat.json
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc      1009 Jan  9 10:06 memory_monitor_summary.json
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc    381743 Jan  9 10:06 log.47898826._028523.job.log.tgz.1
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc      7766 Jan  9 10:06 heartbeat.json
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc        28 Jan  9 10:07 wrapper_checkpoint.txt
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc      8192 Jan  9 10:07 boinc_mmap_file
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc      4996 Jan  9 10:07 pilotlog.txt
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc   1351272 Jan  9 10:07 log.47898826._028523.job.log.1
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc       357 Jan  9 10:07 output.list
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc       620 Jan  9 10:07 runtime_log
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc   1751040 Jan  9 10:07 result.tar.gz
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc      8833 Jan  9 10:07 runtime_log.err
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc       655 Jan  9 10:07 HyxMDmKe7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmmrkKDmIccfWm.diag
[2026-01-09 10:07:42] -rw-r--r--. 1 boinc boinc     20960 Jan  9 10:07 stderr.txt
[2026-01-09 10:07:42] HITS file was successfully produced:
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc 224860808 Jan  9 10:05 shared/HITS.pool.root.1
[2026-01-09 10:07:42]  *** Contents of shared directory: ***
[2026-01-09 10:07:42] total 443112
[2026-01-09 10:07:42] -rw-r--r--. 2 boinc boinc 226519136 Jan  9 07:19 ATLAS.root_0
[2026-01-09 10:07:42] -rw-r--r--. 2 boinc boinc     15847 Jan  9 07:19 start_atlas.sh
[2026-01-09 10:07:42] -rw-r--r--. 2 boinc boinc    592397 Jan  9 07:19 input.tar.gz
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc 224860808 Jan  9 10:05 HITS.pool.root.1
[2026-01-09 10:07:42] -rw-------. 1 boinc boinc   1751040 Jan  9 10:07 result.tar.gz
10:07:43 (20058): run_atlas exited; CPU time 75530.629172
10:07:43 (20058): called boinc_finish(0)

</stderr_txt>
]]>

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