Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:40:07 (1990823): wrapper (7.7.26015): starting
21:40:07 (1990823): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 21:40:08] Arguments: --nthreads 8
[2026-01-08 21:40:08] Threads: 8
[2026-01-08 21:40:08] Checking for CVMFS
[2026-01-08 21:40:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 21:40:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 21:40:08] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 21:40:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 21:40:09] 2.13.3.0 10955 22322 198044 154927 2 113 31900869 40960000 17095 16776704 0 26544238 99.767 17800729 41381 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 21:40:09] CVMFS is ok
[2026-01-08 21:40:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 21:40:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 21:40:09] Further information can be found at the LHC@home message board.
[2026-01-08 21:40:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 21:40:09] Checking for apptainer binary...
[2026-01-08 21:40:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 21:40:09] Running /usr/bin/apptainer --version
[2026-01-08 21:40:09] apptainer version 1.4.5-2.el9
[2026-01-08 21:40:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 21:40:09] c-211-33-1.aglt2.org
[2026-01-08 21:40:09] apptainer works
[2026-01-08 21:40:09] Set ATHENA_PROC_NUMBER=8
[2026-01-08 21:40:09] Set ATHENA_CORE_NUMBER=8
[2026-01-08 21:40:09] Starting ATLAS job with PandaID=6963074672
[2026-01-08 21:40:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:40:05 (1990823): BOINC client no longer exists - exiting
02:40:05 (1990823): timer handler: client dead, exiting
02:45:41 (2637312): wrapper (7.7.26015): starting
02:45:41 (2637312): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 02:45:41] Arguments: --nthreads 8
[2026-01-09 02:45:41] Threads: 8
[2026-01-09 02:45:41] This job has been restarted, cleaning up previous attempt
[2026-01-09 02:45:41] Checking for CVMFS
[2026-01-09 02:45:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 02:45:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 02:45:42] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 02:45:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 02:45:43] 2.13.3.0 10955 22627 214360 154936 1 569 32416187 40960001 16731 16776704 0 27243700 99.773 17843353 41375 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 02:45:43] CVMFS is ok
[2026-01-09 02:45:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 02:45:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 02:45:43] Further information can be found at the LHC@home message board.
[2026-01-09 02:45:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 02:45:43] Checking for apptainer binary...
[2026-01-09 02:45:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 02:45:43] Running /usr/bin/apptainer --version
[2026-01-09 02:45:43] apptainer version 1.4.5-2.el9
[2026-01-09 02:45:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 02:45:44] c-211-33-1.aglt2.org
[2026-01-09 02:45:44] apptainer works
[2026-01-09 02:45:44] Set ATHENA_PROC_NUMBER=8
[2026-01-09 02:45:44] Set ATHENA_CORE_NUMBER=8
[2026-01-09 02:45:44] Starting ATLAS job with PandaID=6963074672
[2026-01-09 02:45:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 08:51:32]  *** The last 200 lines of the pilot log: ***
[2026-01-09 08:51:32] 2026-01-09 13:50:53,094 | INFO     | time since job start (21864s) is within the limit (174528.0s)
[2026-01-09 08:51:32] 2026-01-09 13:50:54,323 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 08:51:32] 2026-01-09 13:50:54,409 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2621.2988854166674
[2026-01-09 08:51:32] 2026-01-09 13:50:54,517 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6963074672/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 08:51:32] 2026-01-09 13:50:54,517 | INFO     | extracted standard info from prmon json
[2026-01-09 08:51:32] 2026-01-09 13:50:54,518 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 08:51:32] 2026-01-09 13:50:54,518 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 08:51:32] 2026-01-09 13:50:54,518 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 08:51:32] 2026-01-09 13:50:54,518 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 08:51:32] 2026-01-09 13:50:54,565 | INFO     | fitting pss+swap vs Time
[2026-01-09 08:51:32] 2026-01-09 13:50:54,566 | INFO     | sum of square deviations: 13990197008.011215
[2026-01-09 08:51:32] 2026-01-09 13:50:54,584 | INFO     | sum of deviations: 60039427884.06178
[2026-01-09 08:51:32] 2026-01-09 13:50:54,584 | INFO     | mean x: 1767955721.6910112
[2026-01-09 08:51:32] 2026-01-09 13:50:54,584 | INFO     | mean y: 2496041.800561798
[2026-01-09 08:51:32] 2026-01-09 13:50:54,584 | INFO     | intersect: -7584748797.846715
[2026-01-09 08:51:32] 2026-01-09 13:50:54,585 | INFO     | chi2: 2.6146557588928006
[2026-01-09 08:51:32] 2026-01-09 13:50:54,597 | INFO     | sum of square deviations: 13408935631.589708
[2026-01-09 08:51:32] 2026-01-09 13:50:54,620 | INFO     | sum of deviations: 82818552497.61542
[2026-01-09 08:51:32] 2026-01-09 13:50:54,620 | INFO     | mean x: 1767955569.1880343
[2026-01-09 08:51:32] 2026-01-09 13:50:54,620 | INFO     | mean y: 2501947.0512820515
[2026-01-09 08:51:32] 2026-01-09 13:50:54,620 | INFO     | intersect: -10917046415.55741
[2026-01-09 08:51:32] 2026-01-09 13:50:54,621 | INFO     | chi2: 1.836358618053805
[2026-01-09 08:51:32] 2026-01-09 13:50:54,621 | INFO     | current chi2=1.836358618053805 (change=29.76671549177749 %)
[2026-01-09 08:51:32] 2026-01-09 13:50:54,622 | INFO     | sum of square deviations: 12844021188.288975
[2026-01-09 08:51:32] 2026-01-09 13:50:54,658 | INFO     | sum of deviations: 81122910362.85542
[2026-01-09 08:51:32] 2026-01-09 13:50:54,659 | INFO     | mean x: 1767955416.6878612
[2026-01-09 08:51:32] 2026-01-09 13:50:54,659 | INFO     | mean y: 2501489.156069364
[2026-01-09 08:51:32] 2026-01-09 13:50:54,659 | INFO     | intersect: -11163914907.312061
[2026-01-09 08:51:32] 2026-01-09 13:50:54,660 | INFO     | chi2: 1.8367908751400313
[2026-01-09 08:51:32] 2026-01-09 13:50:54,660 | INFO     | current chi2=1.8367908751400313 (change=-0.02353881654577942 %)
[2026-01-09 08:51:32] 2026-01-09 13:50:54,660 | INFO     | right removable region: 345
[2026-01-09 08:51:32] 2026-01-09 13:50:54,660 | INFO     | sum of square deviations: 13408937462.82617
[2026-01-09 08:51:32] 2026-01-09 13:50:54,702 | INFO     | sum of deviations: -8947047081.062689
[2026-01-09 08:51:32] 2026-01-09 13:50:54,723 | INFO     | mean x: 1767955874.1937323
[2026-01-09 08:51:32] 2026-01-09 13:50:54,723 | INFO     | mean y: 2514057.9715099717
[2026-01-09 08:51:32] 2026-01-09 13:50:54,723 | INFO     | intersect: 1182173854.8424506
[2026-01-09 08:51:32] 2026-01-09 13:50:54,724 | INFO     | chi2: 0.8316281861374222
[2026-01-09 08:51:32] 2026-01-09 13:50:54,724 | INFO     | current chi2=0.8316281861374222 (change=68.19358788211636 %)
[2026-01-09 08:51:32] 2026-01-09 13:50:54,724 | INFO     | sum of square deviations: 12844067670.288975
[2026-01-09 08:51:32] 2026-01-09 13:50:54,751 | INFO     | sum of deviations: -14608409588.601162
[2026-01-09 08:51:32] 2026-01-09 13:50:54,752 | INFO     | mean x: 1767956026.6878612
[2026-01-09 08:51:32] 2026-01-09 13:50:54,752 | INFO     | mean y: 2515571.809248555
[2026-01-09 08:51:32] 2026-01-09 13:50:54,752 | INFO     | intersect: 2013329157.9316182
[2026-01-09 08:51:32] 2026-01-09 13:50:54,753 | INFO     | chi2: 0.808341079053365
[2026-01-09 08:51:32] 2026-01-09 13:50:54,753 | INFO     | current chi2=0.808341079053365 (change=2.800182518129448 %)
[2026-01-09 08:51:32] 2026-01-09 13:50:54,753 | INFO     | left removable region: 20
[2026-01-09 08:51:32] 2026-01-09 13:50:54,753 | INFO     | sum of square deviations: 10644487239.649313
[2026-01-09 08:51:32] 2026-01-09 13:50:54,776 | INFO     | sum of deviations: 12634511600.270773
[2026-01-09 08:51:32] 2026-01-09 13:50:54,776 | INFO     | mean x: 1767955996.1784616
[2026-01-09 08:51:32] 2026-01-09 13:50:54,777 | INFO     | mean y: 2520271.5815384616
[2026-01-09 08:51:32] 2026-01-09 13:50:54,777 | INFO     | intersect: -2095961321.7151012
[2026-01-09 08:51:32] 2026-01-09 13:50:54,777 | INFO     | chi2: 0.01011824782233784
[2026-01-09 08:51:32] 2026-01-09 13:50:54,777 | INFO     | current memory leak: 1.19 B/s (using 325 data points, chi2=0.01)
[2026-01-09 08:51:32] 2026-01-09 13:50:54,778 | INFO     | could have reported an average CPU frequency of 2663 MHz (15 samples)
[2026-01-09 08:51:32] 2026-01-09 13:50:54,778 | INFO     | ..............................
[2026-01-09 08:51:32] 2026-01-09 13:50:54,778 | INFO     | . Timing measurements:
[2026-01-09 08:51:32] 2026-01-09 13:50:54,778 | INFO     | . get job = 0 s
[2026-01-09 08:51:32] 2026-01-09 13:50:54,778 | INFO     | . initial setup = 3 s
[2026-01-09 08:51:32] 2026-01-09 13:50:54,801 | INFO     | . payload setup = 28 s
[2026-01-09 08:51:32] 2026-01-09 13:50:54,801 | INFO     | . stage-in = 0 s
[2026-01-09 08:51:32] 2026-01-09 13:50:54,801 | INFO     | . payload execution = 21737 s
[2026-01-09 08:51:32] 2026-01-09 13:50:54,801 | INFO     | . stage-out = 7 s
[2026-01-09 08:51:32] 2026-01-09 13:50:54,801 | INFO     | . log creation = 1 s
[2026-01-09 08:51:32] 2026-01-09 13:50:54,801 | INFO     | ..............................
[2026-01-09 08:51:32] 2026-01-09 13:50:55,112 | INFO     | time since job start (21866s) is within the limit (174528.0s)
[2026-01-09 08:51:32] 2026-01-09 13:50:55,873 | INFO     | 
[2026-01-09 08:51:32] 2026-01-09 13:50:55,873 | INFO     | job summary report
[2026-01-09 08:51:32] 2026-01-09 13:50:55,873 | INFO     | --------------------------------------------------
[2026-01-09 08:51:32] 2026-01-09 13:50:55,873 | INFO     | PanDA job id: 6963074672
[2026-01-09 08:51:32] 2026-01-09 13:50:55,873 | INFO     | task id: 47898826
[2026-01-09 08:51:32] 2026-01-09 13:50:55,873 | INFO     | errors: (none)
[2026-01-09 08:51:32] 2026-01-09 13:50:55,873 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 08:51:32] 2026-01-09 13:50:55,873 | INFO     | pilot state: finished 
[2026-01-09 08:51:32] 2026-01-09 13:50:55,873 | INFO     | transexitcode: 0
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | exeerrorcode: 0
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | exeerrordiag: 
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | exitcode: 0
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | exitmsg: OK
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | cpuconsumptiontime: 59710 s
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | nevents: 400
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | neventsw: 0
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | pid: 2679896
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | pgrp: 2679896
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | corecount: 8
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | event service: False
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | sizes: {0: 2283742, 1: 2283826, 2: 2283997, 3: 2284053, 14: 2284053, 23: 2284343, 25: 2284499, 21771: 2318080, 21772: 2318079, 21780: 2327133, 21784: 2327189, 2181
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | --------------------------------------------------
[2026-01-09 08:51:32] 2026-01-09 13:50:55,874 | INFO     | 
[2026-01-09 08:51:32] 2026-01-09 13:50:55,875 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 08:51:32] 2026-01-09 13:50:56,005 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,005 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,005 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,005 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,006 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,007 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 08:51:32] 2026-01-09 13:50:56,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,007 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 08:51:32] 2026-01-09 13:50:56,007 | INFO     | job 6963074672 has completed (purged errors)
[2026-01-09 08:51:32] 2026-01-09 13:50:56,007 | INFO     | overall cleanup function is called
[2026-01-09 08:51:32] 2026-01-09 13:50:57,041 | INFO     | --- collectZombieJob: --- 10, [2679896]
[2026-01-09 08:51:32] 2026-01-09 13:50:57,041 | INFO     | zombie collector waiting for pid 2679896
[2026-01-09 08:51:32] 2026-01-09 13:50:57,041 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 08:51:32] 2026-01-09 13:50:57,041 | INFO     | collected zombie processes
[2026-01-09 08:51:32] 2026-01-09 13:50:57,041 | INFO     | will attempt to kill all subprocesses of pid=2679896
[2026-01-09 08:51:32] 2026-01-09 13:50:58,562 | INFO     | process IDs to be killed: [2679896] (in reverse order)
[2026-01-09 08:51:32] 2026-01-09 13:50:59,067 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 08:51:32] 2026-01-09 13:50:59,067 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 08:51:32] 2026-01-09 13:50:59,121 | INFO     | did not find any defunct processes belonging to 2679896
[2026-01-09 08:51:32] 2026-01-09 13:50:59,171 | INFO     | did not find any defunct processes belonging to 2679896
[2026-01-09 08:51:32] 2026-01-09 13:50:59,171 | INFO     | ready for new job
[2026-01-09 08:51:32] 2026-01-09 13:50:59,171 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 08:51:32] 2026-01-09 13:50:59,187 | INFO     | ***************************************
[2026-01-09 08:51:32] 2026-01-09 13:50:59,187 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 08:51:32] 2026-01-09 13:50:59,187 | INFO     | ***************************************
[2026-01-09 08:51:32] 2026-01-09 13:50:59,188 | INFO     | 
[2026-01-09 08:51:32] 2026-01-09 13:50:59,219 | INFO     | architecture information:
[2026-01-09 08:51:32] 2026-01-09 13:50:59,220 | INFO     | executing command: cat /etc/os-release
[2026-01-09 08:51:32] 2026-01-09 13:50:59,295 | INFO     | cat /etc/os-release:
[2026-01-09 08:51:32] NAME="CentOS Linux"
[2026-01-09 08:51:32] VERSION="7 (Core)"
[2026-01-09 08:51:32] ID="centos"
[2026-01-09 08:51:32] ID_LIKE="rhel fedora"
[2026-01-09 08:51:32] VERSION_ID="7"
[2026-01-09 08:51:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 08:51:32] ANSI_COLOR="0;31"
[2026-01-09 08:51:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 08:51:32] HOME_URL="https://www.centos.org/"
[2026-01-09 08:51:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 08:51:32] 
[2026-01-09 08:51:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 08:51:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 08:51:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 08:51:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 08:51:32] 
[2026-01-09 08:51:32] 2026-01-09 13:50:59,295 | INFO     | ***************************************
[2026-01-09 08:51:32] 2026-01-09 13:50:59,799 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 08:51:32] 2026-01-09 13:50:59,880 | INFO     | sufficient remaining disk space (127367380992 B)
[2026-01-09 08:51:32] 2026-01-09 13:50:59,880 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 08:51:32] 2026-01-09 13:50:59,881 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 08:51:32] 2026-01-09 13:50:59,881 | INFO     | update_server=False
[2026-01-09 08:51:32] 2026-01-09 13:50:59,881 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 08:51:32] 2026-01-09 13:50:59,881 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 08:51:32] 2026-01-09 13:50:59,882 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:51:32] 2026-01-09 13:50:59,882 | INFO     | aborting loop
[2026-01-09 08:51:32] 2026-01-09 13:50:59,890 | INFO     | all data control threads have been joined
[2026-01-09 08:51:32] 2026-01-09 13:51:00,054 | INFO     | all payload control threads have been joined
[2026-01-09 08:51:32] 2026-01-09 13:51:00,492 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:51:32] 2026-01-09 13:51:00,752 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 08:51:32] 2026-01-09 13:51:00,763 | INFO     | all job control threads have been joined
[2026-01-09 08:51:32] 2026-01-09 13:51:00,887 | INFO     | [job] retrieve thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:00,888 | INFO     | [job] job monitor thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:00,896 | INFO     | [data] control thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:01,060 | INFO     | [payload] control thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:01,375 | INFO     | [payload] failed_post thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:01,400 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:01,443 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:01,498 | INFO     | [job] queue monitor thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:01,502 | INFO     | [data] copytool_in thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:01,769 | INFO     | [job] control thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:02,295 | INFO     | [payload] validate_post thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:02,336 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:02,340 | INFO     | [job] validate thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:02,342 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:02,759 | INFO     | [data] copytool_out thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:03,890 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 08:51:32] 2026-01-09 13:51:07,125 | INFO     | [monitor] cgroup control has ended
[2026-01-09 08:51:32] 2026-01-09 13:51:07,272 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139777868683072)>', '<ExcThread(monitor, started 139777420551936)>']
[2026-01-09 08:51:32] 2026-01-09 13:51:12,298 | INFO     | all workflow threads have been joined
[2026-01-09 08:51:32] 2026-01-09 13:51:12,298 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 08:51:32] 2026-01-09 13:51:12,298 | INFO     | traces error code: 0
[2026-01-09 08:51:32] 2026-01-09 13:51:12,298 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 08:51:32] 2026-01-09 13:51:30,904 | INFO     | PID=2653686 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 08:51:32] 2026-01-09 13:51:30,905 | INFO     | .. there are 15 such processes running
[2026-01-09 08:51:32] 2026-01-09 13:51:30,905 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 08:51:32] 2026-01-09 13:51:30,905 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 08:51:32] 2026-01-09 13:51:30,905 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 08:51:32] 2026-01-09 13:51:30,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 08:51:32] 2026-01-09 13:51:30,905 | INFO     | [monitor] control thread has ended
[2026-01-09 08:51:32] 2026-01-09 13:51:31,539 [wrapper] ==== pilot stdout END ====
[2026-01-09 08:51:32] 2026-01-09 13:51:31,554 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 08:51:32] 2026-01-09 13:51:31,577 [wrapper] pilotpid: 2653686
[2026-01-09 08:51:32] 2026-01-09 13:51:31,588 [wrapper] Pilot exit status: 0
[2026-01-09 08:51:32] 2026-01-09 13:51:31,774 [wrapper] pandaids: 6963074672 6963074672
[2026-01-09 08:51:32] 2026-01-09 13:51:32,038 [wrapper] cleanup supervisor_pilot 3378515 2653687
[2026-01-09 08:51:32] 2026-01-09 13:51:32,051 [wrapper] Test setup, not cleaning
[2026-01-09 08:51:32] 2026-01-09 13:51:32,090 [wrapper] apfmon messages muted
[2026-01-09 08:51:32] 2026-01-09 13:51:32,119 [wrapper] ==== wrapper stdout END ====
[2026-01-09 08:51:32] 2026-01-09 13:51:32,138 [wrapper] ==== wrapper stderr END ====
[2026-01-09 08:51:32]  *** Error codes and diagnostics ***
[2026-01-09 08:51:32]     "exeErrorCode": 0,
[2026-01-09 08:51:32]     "exeErrorDiag": "",
[2026-01-09 08:51:32]     "pilotErrorCode": 0,
[2026-01-09 08:51:32]     "pilotErrorDiag": "",
[2026-01-09 08:51:32]  *** Listing of results directory ***
[2026-01-09 08:51:32] total 664792
[2026-01-09 08:51:32] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 06:09 pilot3.tar.gz
[2026-01-09 08:51:32] -rwx------. 1 boincer umatlas     36322 Jan  8 06:10 runpilot2-wrapper.sh
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 06:12 queuedata.json
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas       100 Jan  8 21:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 08:51:32] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 21:40 run_atlas
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas       105 Jan  8 21:40 job.xml
[2026-01-09 08:51:32] -rw-r--r--. 3 boincer umatlas 225881046 Jan  8 21:40 EVNT.47898824._000918.pool.root.1
[2026-01-09 08:51:32] -rw-r--r--. 3 boincer umatlas 225881046 Jan  8 21:40 ATLAS.root_0
[2026-01-09 08:51:32] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 21:40 start_atlas.sh
[2026-01-09 08:51:32] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 21:40 shared
[2026-01-09 08:51:32] -rw-r--r--. 2 boincer umatlas    592393 Jan  8 21:40 input.tar.gz
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas         0 Jan  8 21:40 boinc_lockfile
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 02:45 pandaJob.out
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas        57 Jan  9 02:45 setup.sh.local
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas    989771 Jan  9 02:46 agis_schedconf.cvmfs.json
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas      6861 Jan  9 08:47 init_data.xml
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas       532 Jan  9 08:48 boinc_task_state.xml
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas 218628604 Jan  9 08:48 HITS.47898826._023038.pool.root.1
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas      1052 Jan  9 08:50 memory_monitor_summary.json
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas   1516240 Jan  9 08:50 agis_ddmendpoints.agis.ALL.json
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas    545700 Jan  9 08:50 log.47898826._023038.job.log.tgz.1
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas        96 Jan  9 08:50 pilot_heartbeat.json
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas      7848 Jan  9 08:50 heartbeat.json
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 08:51 boinc_mmap_file
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas        29 Jan  9 08:51 wrapper_checkpoint.txt
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas       823 Jan  9 08:51 pilotlog.txt
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas   2674309 Jan  9 08:51 log.47898826._023038.job.log.1
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas       357 Jan  9 08:51 output.list
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas       620 Jan  9 08:51 runtime_log
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas   3235840 Jan  9 08:51 result.tar.gz
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas       786 Jan  9 08:51 sDIKDmA52x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGLkKDmcnhYcn.diag
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas      9438 Jan  9 08:51 runtime_log.err
[2026-01-09 08:51:32] -rw-r--r--. 1 boincer umatlas     23519 Jan  9 08:51 stderr.txt
[2026-01-09 08:51:32] HITS file was successfully produced:
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas 218628604 Jan  9 08:48 shared/HITS.pool.root.1
[2026-01-09 08:51:32]  *** Contents of shared directory: ***
[2026-01-09 08:51:32] total 437860
[2026-01-09 08:51:32] -rw-r--r--. 3 boincer umatlas 225881046 Jan  8 21:40 ATLAS.root_0
[2026-01-09 08:51:32] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 21:40 start_atlas.sh
[2026-01-09 08:51:32] -rw-r--r--. 2 boincer umatlas    592393 Jan  8 21:40 input.tar.gz
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas 218628604 Jan  9 08:48 HITS.pool.root.1
[2026-01-09 08:51:32] -rw-------. 1 boincer umatlas   3235840 Jan  9 08:51 result.tar.gz
08:51:34 (2637312): run_atlas exited; CPU time 60485.576390
08:51:34 (2637312): called boinc_finish(0)

</stderr_txt>
]]>

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