Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:37:21 (715171): wrapper (7.7.26015): starting
15:37:21 (715171): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 15:37:21] Arguments: --nthreads 4
[2026-01-09 15:37:21] Threads: 4
[2026-01-09 15:37:21] Checking for CVMFS
[2026-01-09 15:37:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:37:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:37:21] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:37:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:37:21] 2.9.2.0 183021 1668 81752 154946 0 57 32466623 36864001 0 130560 0 1212731 99.990 63174 3939 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 15:37:21] CVMFS is ok
[2026-01-09 15:37:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:37:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:37:21] Further information can be found at the LHC@home message board.
[2026-01-09 15:37:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:37:21] Checking for apptainer binary...
[2026-01-09 15:37:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:37:21] Running /usr/bin/apptainer --version
[2026-01-09 15:37:21] apptainer version 1.4.1-1.1
[2026-01-09 15:37:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:37:21] thA319
[2026-01-09 15:37:21] apptainer works
[2026-01-09 15:37:21] Set ATHENA_PROC_NUMBER=4
[2026-01-09 15:37:21] Set ATHENA_CORE_NUMBER=4
[2026-01-09 15:37:21] Starting ATLAS job with PandaID=6962918585
[2026-01-09 15:37:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 17:18:43]  *** The last 200 lines of the pilot log: ***
[2026-01-09 17:18:43] 2026-01-09 16:17:53,160 | INFO     | aborting loop
[2026-01-09 17:18:43] 2026-01-09 16:17:53,322 | INFO     | all payload control threads have been joined
[2026-01-09 17:18:43] 2026-01-09 16:17:53,531 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 17:18:43] 2026-01-09 16:17:53,549 | INFO     | all data control threads have been joined
[2026-01-09 17:18:43] 2026-01-09 16:17:53,644 | INFO     | [job] retrieve thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:53,645 | INFO     | [job] queue monitor thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:53,780 | INFO     | all job control threads have been joined
[2026-01-09 17:18:43] 2026-01-09 16:17:54,127 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:54,165 | INFO     | [job] job monitor thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:54,180 | INFO     | [payload] validate_post thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:54,328 | INFO     | [payload] control thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:54,555 | INFO     | [data] control thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:54,636 | INFO     | [job] validate thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:54,767 | INFO     | [payload] failed_post thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:54,785 | INFO     | [job] control thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:54,844 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:54,850 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:54,978 | INFO     | [data] copytool_out thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:55,044 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:55,091 | INFO     | [data] copytool_in thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:17:57,538 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 17:18:43] 2026-01-09 16:18:23,459 | INFO     | PID=718973 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 17:18:43] 2026-01-09 16:18:23,459 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 17:18:43] 2026-01-09 16:18:23,459 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 17:18:43] 2026-01-09 16:18:23,459 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 17:18:43] 2026-01-09 16:18:36,153 | INFO     | [monitor] cgroup control has ended
[2026-01-09 17:18:43] 2026-01-09 16:18:37,911 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140268245129024)>', '<ExcThread(monitor, started 140267894060800)>']
[2026-01-09 17:18:43] 2026-01-09 16:18:38,536 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 17:18:43] 2026-01-09 16:18:38,537 | INFO     | [monitor] control thread has ended
[2026-01-09 17:18:43] 2026-01-09 16:18:42,937 | INFO     | all workflow threads have been joined
[2026-01-09 17:18:43] 2026-01-09 16:18:42,937 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 17:18:43] 2026-01-09 16:18:42,937 | INFO     | traces error code: 0
[2026-01-09 17:18:43] 2026-01-09 16:18:42,937 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 17:18:43] 2026-01-09 16:18:43,020 [wrapper] ==== pilot stdout END ====
[2026-01-09 17:18:43] 2026-01-09 16:18:43,024 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 17:18:43] 2026-01-09 16:18:43,028 [wrapper] pilotpid: 718973
[2026-01-09 17:18:43] 2026-01-09 16:18:43,031 [wrapper] Pilot exit status: 0
[2026-01-09 17:18:43] 2026-01-09 16:18:43,042 [wrapper] pandaids: 6962918585
[2026-01-09 17:18:43] 2026-01-09 16:18:43,065 [wrapper] cleanup supervisor_pilot  740835 718974
[2026-01-09 17:18:43] 2026-01-09 16:18:43,069 [wrapper] Test setup, not cleaning
[2026-01-09 17:18:43] 2026-01-09 16:18:43,073 [wrapper] apfmon messages muted
[2026-01-09 17:18:43] 2026-01-09 16:18:43,077 [wrapper] ==== wrapper stdout END ====
[2026-01-09 17:18:43] 2026-01-09 16:18:43,080 [wrapper] ==== wrapper stderr END ====
[2026-01-09 17:18:43]  *** Error codes and diagnostics ***
[2026-01-09 17:18:43]     "exeErrorCode": 0,
[2026-01-09 17:18:43]     "exeErrorDiag": "",
[2026-01-09 17:18:43]     "pilotErrorCode": 0,
[2026-01-09 17:18:43]     "pilotErrorDiag": "",
[2026-01-09 17:18:43]  *** Listing of results directory ***
[2026-01-09 17:18:43] total 441108
[2026-01-09 17:18:43] -rwx------ 1 boinc boinc     36322 Jan  8 09:04 runpilot2-wrapper.sh
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc      5112 Jan  8 09:07 queuedata.json
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc    579449 Jan  8 09:09 pilot3.tar.gz
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc       100 Jan  9 15:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 17:18:43] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 15:37 run_atlas
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc       105 Jan  9 15:37 job.xml
[2026-01-09 17:18:43] -rw-r--r-- 2 boinc boinc 222779937 Jan  9 15:37 EVNT.47898824._000801.pool.root.1
[2026-01-09 17:18:43] -rw-r--r-- 2 boinc boinc    592399 Jan  9 15:37 input.tar.gz
[2026-01-09 17:18:43] -rw-r--r-- 2 boinc boinc     15847 Jan  9 15:37 start_atlas.sh
[2026-01-09 17:18:43] drwxrwx--x 2 boinc boinc      4096 Jan  9 15:37 shared
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc         0 Jan  9 15:37 boinc_setup_complete
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc      6369 Jan  9 15:37 init_data.xml
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc         0 Jan  9 15:37 boinc_lockfile
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc      2519 Jan  9 15:37 pandaJob.out
[2026-01-09 17:18:43] -rw------- 1 boinc boinc    989377 Jan  9 15:37 agis_schedconf.cvmfs.json
[2026-01-09 17:18:43] -rw------- 1 boinc boinc   1516240 Jan  9 15:37 agis_ddmendpoints.agis.ALL.json
[2026-01-09 17:18:43] drwx------ 5 boinc boinc      4096 Jan  9 15:37 pilot3
[2026-01-09 17:18:43] -rw------- 1 boinc boinc 222704353 Jan  9 17:17 HITS.47898826._020633.pool.root.1
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc       529 Jan  9 17:17 boinc_task_state.xml
[2026-01-09 17:18:43] -rw------- 1 boinc boinc      1017 Jan  9 17:17 memory_monitor_summary.json
[2026-01-09 17:18:43] -rw------- 1 boinc boinc    282351 Jan  9 17:17 log.47898826._020633.job.log.tgz.1
[2026-01-09 17:18:43] -rw------- 1 boinc boinc      7755 Jan  9 17:17 heartbeat.json
[2026-01-09 17:18:43] -rw------- 1 boinc boinc        95 Jan  9 17:18 pilot_heartbeat.json
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc      8192 Jan  9 17:18 boinc_mmap_file
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc        27 Jan  9 17:18 wrapper_checkpoint.txt
[2026-01-09 17:18:43] -rw------- 1 boinc boinc      4751 Jan  9 17:18 pilotlog.txt
[2026-01-09 17:18:43] -rw------- 1 boinc boinc    872191 Jan  9 17:18 log.47898826._020633.job.log.1
[2026-01-09 17:18:43] -rw------- 1 boinc boinc       357 Jan  9 17:18 output.list
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc       620 Jan  9 17:18 runtime_log
[2026-01-09 17:18:43] -rw------- 1 boinc boinc   1177600 Jan  9 17:18 result.tar.gz
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc      8897 Jan  9 17:18 runtime_log.err
[2026-01-09 17:18:43] -rw------- 1 boinc boinc       659 Jan  9 17:18 XijMDmbB0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzgjKDmqKKqYn.diag
[2026-01-09 17:18:43] -rw-r--r-- 1 boinc boinc      6804 Jan  9 17:18 stderr.txt
[2026-01-09 17:18:43] HITS file was successfully produced:
[2026-01-09 17:18:43] -rw------- 1 boinc boinc 222704353 Jan  9 17:17 shared/HITS.pool.root.1
[2026-01-09 17:18:43]  *** Contents of shared directory: ***
[2026-01-09 17:18:43] total 436804
[2026-01-09 17:18:43] -rw-r--r-- 2 boinc boinc 222779937 Jan  9 15:37 ATLAS.root_0
[2026-01-09 17:18:43] -rw-r--r-- 2 boinc boinc    592399 Jan  9 15:37 input.tar.gz
[2026-01-09 17:18:43] -rw-r--r-- 2 boinc boinc     15847 Jan  9 15:37 start_atlas.sh
[2026-01-09 17:18:43] -rw------- 1 boinc boinc 222704353 Jan  9 17:17 HITS.pool.root.1
[2026-01-09 17:18:43] -rw------- 1 boinc boinc   1177600 Jan  9 17:18 result.tar.gz
17:18:44 (715171): run_atlas exited; CPU time 23006.260797
17:18:44 (715171): called boinc_finish(0)

</stderr_txt>
]]>

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