Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:59:26 (2974386): wrapper (7.7.26015): starting
16:59:26 (2974386): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 16:59:26] Arguments: --nthreads 3
[2026-01-09 16:59:26] Threads: 3
[2026-01-09 16:59:26] Checking for CVMFS
[2026-01-09 16:59:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:59:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:59:26] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:59:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:59:26] 2.9.2.0 2333934 2574 84088 154948 2 57 22169031 36864000 0 130560 0 1685396 99.990 94690 5216 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 16:59:26] CVMFS is ok
[2026-01-09 16:59:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:59:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:59:26] Further information can be found at the LHC@home message board.
[2026-01-09 16:59:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:59:26] Checking for apptainer binary...
[2026-01-09 16:59:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:59:26] Running /usr/bin/apptainer --version
[2026-01-09 16:59:26] apptainer version 1.4.1-1.1
[2026-01-09 16:59:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:59:26] magicA246
[2026-01-09 16:59:26] apptainer works
[2026-01-09 16:59:26] Set ATHENA_PROC_NUMBER=3
[2026-01-09 16:59:26] Set ATHENA_CORE_NUMBER=3
[2026-01-09 16:59:26] Starting ATLAS job with PandaID=6963147364
[2026-01-09 16:59:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:48:52]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:48:52] 2026-01-09 17:48:21,935 | INFO     | all data control threads have been joined
[2026-01-09 18:48:52] 2026-01-09 17:48:22,839 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:22,839 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:22,839 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:22,905 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:22,940 | INFO     | [data] control thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:23,052 | INFO     | all payload control threads have been joined
[2026-01-09 18:48:52] 2026-01-09 17:48:23,052 | INFO     | all job control threads have been joined
[2026-01-09 18:48:52] 2026-01-09 17:48:23,601 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:23,839 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:23,975 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:24,057 | INFO     | [job] control thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:24,058 | INFO     | [payload] control thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:24,193 | INFO     | [job] validate thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:24,252 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:24,310 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:24,328 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:25,840 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:32,713 | INFO     | job.realtimelogging is not enabled
[2026-01-09 18:48:52] 2026-01-09 17:48:33,719 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:48:52] 2026-01-09 17:48:41,345 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:48:52] 2026-01-09 17:48:43,111 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139644847052608)>', '<ExcThread(monitor, started 139644058453760)>']
[2026-01-09 18:48:52] 2026-01-09 17:48:48,113 | INFO     | all workflow threads have been joined
[2026-01-09 18:48:52] 2026-01-09 17:48:48,113 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:48:52] 2026-01-09 17:48:48,114 | INFO     | traces error code: 0
[2026-01-09 18:48:52] 2026-01-09 17:48:48,114 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:48:52] 2026-01-09 17:48:52,854 | INFO     | PID=2978117 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 18:48:52] 2026-01-09 17:48:52,854 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:48:52] 2026-01-09 17:48:52,854 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:48:52] 2026-01-09 17:48:52,854 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:48:52] 2026-01-09 17:48:52,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:48:52] 2026-01-09 17:48:52,855 | CRITICAL | thread 'MainThread' is not alive
[2026-01-09 18:48:52] 2026-01-09 17:48:52,855 | INFO     | [monitor] control thread has ended
[2026-01-09 18:48:52] 2026-01-09 17:48:52,904 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:48:52] 2026-01-09 17:48:52,907 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:48:52] 2026-01-09 17:48:52,909 [wrapper] pilotpid: 2978117
[2026-01-09 18:48:52] 2026-01-09 17:48:52,912 [wrapper] Pilot exit status: 0
[2026-01-09 18:48:52] 2026-01-09 17:48:52,920 [wrapper] pandaids: 6963147364
[2026-01-09 18:48:52] 2026-01-09 17:48:52,937 [wrapper] cleanup supervisor_pilot 2998916 2978118
[2026-01-09 18:48:52] 2026-01-09 17:48:52,939 [wrapper] Test setup, not cleaning
[2026-01-09 18:48:52] 2026-01-09 17:48:52,942 [wrapper] apfmon messages muted
[2026-01-09 18:48:52] 2026-01-09 17:48:52,945 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:48:52] 2026-01-09 17:48:52,947 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:48:52]  *** Error codes and diagnostics ***
[2026-01-09 18:48:52]     "exeErrorCode": 0,
[2026-01-09 18:48:52]     "exeErrorDiag": "",
[2026-01-09 18:48:52]     "pilotErrorCode": 0,
[2026-01-09 18:48:52]     "pilotErrorDiag": "",
[2026-01-09 18:48:52]  *** Listing of results directory ***
[2026-01-09 18:48:52] total 429576
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc    579449 Jan  8 16:02 pilot3.tar.gz
[2026-01-09 18:48:52] -rwx------ 1 boinc boinc     36322 Jan  8 16:06 runpilot2-wrapper.sh
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc      5112 Jan  8 16:07 queuedata.json
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc       100 Jan  9 16:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:48:52] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 16:59 run_atlas
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc       105 Jan  9 16:59 job.xml
[2026-01-09 18:48:52] -rw-r--r-- 2 boinc boinc 221080696 Jan  9 16:59 EVNT.47898824._001099.pool.root.1
[2026-01-09 18:48:52] -rw-r--r-- 2 boinc boinc    592392 Jan  9 16:59 input.tar.gz
[2026-01-09 18:48:52] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:59 start_atlas.sh
[2026-01-09 18:48:52] drwxrwx--x 2 boinc boinc      4096 Jan  9 16:59 shared
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:59 boinc_setup_complete
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc      6448 Jan  9 16:59 init_data.xml
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:59 boinc_lockfile
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc      2519 Jan  9 16:59 pandaJob.out
[2026-01-09 18:48:52] -rw------- 1 boinc boinc    989377 Jan  9 16:59 agis_schedconf.cvmfs.json
[2026-01-09 18:48:52] -rw------- 1 boinc boinc   1516240 Jan  9 16:59 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:48:52] drwx------ 5 boinc boinc      4096 Jan  9 16:59 pilot3
[2026-01-09 18:48:52] -rw------- 1 boinc boinc 212468524 Jan  9 18:47 HITS.47898826._027559.pool.root.1
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc       529 Jan  9 18:48 boinc_task_state.xml
[2026-01-09 18:48:52] -rw------- 1 boinc boinc        95 Jan  9 18:48 pilot_heartbeat.json
[2026-01-09 18:48:52] -rw------- 1 boinc boinc      1010 Jan  9 18:48 memory_monitor_summary.json
[2026-01-09 18:48:52] -rw------- 1 boinc boinc    276740 Jan  9 18:48 log.47898826._027559.job.log.tgz.1
[2026-01-09 18:48:52] -rw------- 1 boinc boinc      7745 Jan  9 18:48 heartbeat.json
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc      8192 Jan  9 18:48 boinc_mmap_file
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc        27 Jan  9 18:48 wrapper_checkpoint.txt
[2026-01-09 18:48:52] -rw------- 1 boinc boinc       817 Jan  9 18:48 pilotlog.txt
[2026-01-09 18:48:52] -rw------- 1 boinc boinc    945739 Jan  9 18:48 log.47898826._027559.job.log.1
[2026-01-09 18:48:52] -rw------- 1 boinc boinc       357 Jan  9 18:48 output.list
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc       620 Jan  9 18:48 runtime_log
[2026-01-09 18:48:52] -rw------- 1 boinc boinc   1239040 Jan  9 18:48 result.tar.gz
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc      8912 Jan  9 18:48 runtime_log.err
[2026-01-09 18:48:52] -rw------- 1 boinc boinc       662 Jan  9 18:48 kBJNDmDm6x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1pkKDmtRjH0m.diag
[2026-01-09 18:48:52] -rw-r--r-- 1 boinc boinc      6792 Jan  9 18:48 stderr.txt
[2026-01-09 18:48:52] HITS file was successfully produced:
[2026-01-09 18:48:53] -rw------- 1 boinc boinc 212468524 Jan  9 18:47 shared/HITS.pool.root.1
[2026-01-09 18:48:53]  *** Contents of shared directory: ***
[2026-01-09 18:48:53] total 425208
[2026-01-09 18:48:53] -rw-r--r-- 2 boinc boinc 221080696 Jan  9 16:59 ATLAS.root_0
[2026-01-09 18:48:53] -rw-r--r-- 2 boinc boinc    592392 Jan  9 16:59 input.tar.gz
[2026-01-09 18:48:53] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:59 start_atlas.sh
[2026-01-09 18:48:53] -rw------- 1 boinc boinc 212468524 Jan  9 18:47 HITS.pool.root.1
[2026-01-09 18:48:53] -rw------- 1 boinc boinc   1239040 Jan  9 18:48 result.tar.gz
18:48:54 (2974386): run_atlas exited; CPU time 18921.911116
18:48:54 (2974386): called boinc_finish(0)

</stderr_txt>
]]>

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