Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:17:11 (919172): wrapper (7.7.26015): starting
21:17:11 (919172): wrapper: running run_atlas (--nthreads 9)
[2026-01-08 21:17:11] Arguments: --nthreads 9
[2026-01-08 21:17:11] Threads: 9
[2026-01-08 21:17:11] Checking for CVMFS
[2026-01-08 21:17:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 21:17:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 21:17:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 21:17:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 21:17:11] 2.13.3.0 11857 32050 236976 154927 2 185 31634318 32935936 6634 16776704 0 29227992 99.517 34596915 38934 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 21:17:11] CVMFS is ok
[2026-01-08 21:17:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 21:17:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 21:17:11] Further information can be found at the LHC@home message board.
[2026-01-08 21:17:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 21:17:11] Checking for apptainer binary...
[2026-01-08 21:17:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 21:17:11] Running /usr/bin/apptainer --version
[2026-01-08 21:17:11] apptainer version 1.4.5-2.el9
[2026-01-08 21:17:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 21:17:11] c6-6-39-3.aglt2.org
[2026-01-08 21:17:11] apptainer works
[2026-01-08 21:17:11] Set ATHENA_PROC_NUMBER=9
[2026-01-08 21:17:11] Set ATHENA_CORE_NUMBER=9
[2026-01-08 21:17:11] Starting ATLAS job with PandaID=6963146965
[2026-01-08 21:17:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 12:41:22]  *** The last 200 lines of the pilot log: ***
[2026-01-09 12:41:22] 2026-01-09 17:40:40,005 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2888.9701249999985
[2026-01-09 12:41:22] 2026-01-09 17:40:40,119 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963146965/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 12:41:22] 2026-01-09 17:40:40,120 | INFO     | extracted standard info from prmon json
[2026-01-09 12:41:22] 2026-01-09 17:40:40,120 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 12:41:22] 2026-01-09 17:40:40,120 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 12:41:22] 2026-01-09 17:40:40,145 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 12:41:22] 2026-01-09 17:40:40,145 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 12:41:22] 2026-01-09 17:40:40,257 | INFO     | fitting pss+swap vs Time
[2026-01-09 12:41:22] 2026-01-09 17:40:40,295 | INFO     | sum of square deviations: 231363040347.08047
[2026-01-09 12:41:22] 2026-01-09 17:40:40,450 | INFO     | sum of deviations: -34436109150.46526
[2026-01-09 12:41:22] 2026-01-09 17:40:40,450 | INFO     | mean x: 1767952701.7607498
[2026-01-09 12:41:22] 2026-01-09 17:40:40,450 | INFO     | mean y: 2568893.9195148842
[2026-01-09 12:41:22] 2026-01-09 17:40:40,450 | INFO     | intersect: 265711235.5803159
[2026-01-09 12:41:22] 2026-01-09 17:40:40,452 | INFO     | chi2: 3.0789953650440265
[2026-01-09 12:41:22] 2026-01-09 17:40:40,453 | INFO     | sum of square deviations: 227557795228.25284
[2026-01-09 12:41:22] 2026-01-09 17:40:40,598 | INFO     | sum of deviations: 80541687262.73169
[2026-01-09 12:41:22] 2026-01-09 17:40:40,599 | INFO     | mean x: 1767952549.2616408
[2026-01-09 12:41:22] 2026-01-09 17:40:40,599 | INFO     | mean y: 2573486.073170732
[2026-01-09 12:41:22] 2026-01-09 17:40:40,599 | INFO     | intersect: -623174716.3786569
[2026-01-09 12:41:22] 2026-01-09 17:40:40,638 | INFO     | chi2: 1.6900855312324783
[2026-01-09 12:41:22] 2026-01-09 17:40:40,638 | INFO     | current chi2=1.6900855312324783 (change=45.109188847112414 %)
[2026-01-09 12:41:22] 2026-01-09 17:40:40,640 | INFO     | sum of square deviations: 223794448996.9455
[2026-01-09 12:41:22] 2026-01-09 17:40:40,792 | INFO     | sum of deviations: 78255199626.46494
[2026-01-09 12:41:22] 2026-01-09 17:40:40,792 | INFO     | mean x: 1767952396.761427
[2026-01-09 12:41:22] 2026-01-09 17:40:40,792 | INFO     | mean y: 2573393.4180602008
[2026-01-09 12:41:22] 2026-01-09 17:40:40,793 | INFO     | intersect: -615634378.7530043
[2026-01-09 12:41:22] 2026-01-09 17:40:40,794 | INFO     | chi2: 1.6899476484316758
[2026-01-09 12:41:22] 2026-01-09 17:40:40,794 | INFO     | current chi2=1.6899476484316758 (change=0.008158332714792476 %)
[2026-01-09 12:41:22] 2026-01-09 17:40:40,794 | INFO     | right removable region: 896
[2026-01-09 12:41:22] 2026-01-09 17:40:40,830 | INFO     | sum of square deviations: 227557539941.67313
[2026-01-09 12:41:22] 2026-01-09 17:40:40,995 | INFO     | sum of deviations: -181584425387.34695
[2026-01-09 12:41:22] 2026-01-09 17:40:40,995 | INFO     | mean x: 1767952854.2649667
[2026-01-09 12:41:22] 2026-01-09 17:40:40,995 | INFO     | mean y: 2574776.5997782703
[2026-01-09 12:41:22] 2026-01-09 17:40:40,995 | INFO     | intersect: 1413350720.2837803
[2026-01-09 12:41:22] 2026-01-09 17:40:40,997 | INFO     | chi2: 1.632661294441867
[2026-01-09 12:41:22] 2026-01-09 17:40:40,997 | INFO     | current chi2=1.632661294441867 (change=46.974220455881664 %)
[2026-01-09 12:41:22] 2026-01-09 17:40:40,998 | INFO     | sum of square deviations: 223793993811.2304
[2026-01-09 12:41:22] 2026-01-09 17:40:41,105 | INFO     | sum of deviations: -184800392504.3846
[2026-01-09 12:41:22] 2026-01-09 17:40:41,106 | INFO     | mean x: 1767953006.7692308
[2026-01-09 12:41:22] 2026-01-09 17:40:41,106 | INFO     | mean y: 2574904.515050167
[2026-01-09 12:41:22] 2026-01-09 17:40:41,106 | INFO     | intersect: 1462481866.3428411
[2026-01-09 12:41:22] 2026-01-09 17:40:41,107 | INFO     | chi2: 1.6154095766216476
[2026-01-09 12:41:22] 2026-01-09 17:40:41,107 | INFO     | current chi2=1.6154095766216476 (change=1.0566623879031183 %)
[2026-01-09 12:41:22] 2026-01-09 17:40:41,107 | INFO     | left removable region: 20
[2026-01-09 12:41:22] 2026-01-09 17:40:41,129 | INFO     | sum of square deviations: 208440809316.2466
[2026-01-09 12:41:22] 2026-01-09 17:40:41,201 | INFO     | sum of deviations: -27697645967.301548
[2026-01-09 12:41:22] 2026-01-09 17:40:41,201 | INFO     | mean x: 1767952976.2739725
[2026-01-09 12:41:22] 2026-01-09 17:40:41,201 | INFO     | mean y: 2577638.359589041
[2026-01-09 12:41:22] 2026-01-09 17:40:41,201 | INFO     | intersect: 237503494.69407994
[2026-01-09 12:41:22] 2026-01-09 17:40:41,232 | INFO     | chi2: 0.1798789710318569
[2026-01-09 12:41:22] 2026-01-09 17:40:41,232 | INFO     | current memory leak: -0.13 B/s (using 876 data points, chi2=0.18)
[2026-01-09 12:41:22] 2026-01-09 17:40:41,233 | INFO     | could have reported an average CPU frequency of 2894 MHz (33 samples)
[2026-01-09 12:41:22] 2026-01-09 17:40:41,233 | INFO     | ..............................
[2026-01-09 12:41:22] 2026-01-09 17:40:41,233 | INFO     | . Timing measurements:
[2026-01-09 12:41:22] 2026-01-09 17:40:41,234 | INFO     | . get job = 0 s
[2026-01-09 12:41:22] 2026-01-09 17:40:41,234 | INFO     | . initial setup = 2 s
[2026-01-09 12:41:22] 2026-01-09 17:40:41,234 | INFO     | . payload setup = 5 s
[2026-01-09 12:41:22] 2026-01-09 17:40:41,234 | INFO     | . stage-in = 0 s
[2026-01-09 12:41:22] 2026-01-09 17:40:41,234 | INFO     | . payload execution = 55319 s
[2026-01-09 12:41:22] 2026-01-09 17:40:41,234 | INFO     | . stage-out = 10 s
[2026-01-09 12:41:22] 2026-01-09 17:40:41,234 | INFO     | . log creation = 3 s
[2026-01-09 12:41:22] 2026-01-09 17:40:41,234 | INFO     | ..............................
[2026-01-09 12:41:22] 2026-01-09 17:40:41,378 | INFO     | time since job start (55399s) is within the limit (349056.0s)
[2026-01-09 12:41:22] 2026-01-09 17:40:42,200 | INFO     | 
[2026-01-09 12:41:22] 2026-01-09 17:40:42,200 | INFO     | job summary report
[2026-01-09 12:41:22] 2026-01-09 17:40:42,200 | INFO     | --------------------------------------------------
[2026-01-09 12:41:22] 2026-01-09 17:40:42,200 | INFO     | PanDA job id: 6963146965
[2026-01-09 12:41:22] 2026-01-09 17:40:42,200 | INFO     | task id: 47898826
[2026-01-09 12:41:22] 2026-01-09 17:40:42,200 | INFO     | errors: (none)
[2026-01-09 12:41:22] 2026-01-09 17:40:42,200 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 12:41:22] 2026-01-09 17:40:42,200 | INFO     | pilot state: finished 
[2026-01-09 12:41:22] 2026-01-09 17:40:42,200 | INFO     | transexitcode: 0
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | exeerrorcode: 0
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | exeerrordiag: 
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | exitcode: 0
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | exitmsg: OK
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | cpuconsumptiontime: 56232 s
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | nevents: 400
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | neventsw: 0
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | pid: 942404
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | pgrp: 942404
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | corecount: 9
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | event service: False
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | sizes: {0: 2283142, 1: 2283998, 5: 2284260, 12: 2284316, 55331: 2333252, 55342: 2342250, 55344: 2342434, 55384: 2342692}
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | --------------------------------------------------
[2026-01-09 12:41:22] 2026-01-09 17:40:42,201 | INFO     | 
[2026-01-09 12:41:22] 2026-01-09 17:40:42,202 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 12:41:22] 2026-01-09 17:40:42,278 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,278 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,278 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,278 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,279 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 12:41:22] 2026-01-09 17:40:42,280 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,280 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 12:41:22] 2026-01-09 17:40:42,280 | INFO     | job 6963146965 has completed (purged errors)
[2026-01-09 12:41:22] 2026-01-09 17:40:42,280 | INFO     | overall cleanup function is called
[2026-01-09 12:41:22] 2026-01-09 17:40:43,291 | INFO     | --- collectZombieJob: --- 10, [942404]
[2026-01-09 12:41:22] 2026-01-09 17:40:43,291 | INFO     | zombie collector waiting for pid 942404
[2026-01-09 12:41:22] 2026-01-09 17:40:43,291 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 12:41:22] 2026-01-09 17:40:43,291 | INFO     | collected zombie processes
[2026-01-09 12:41:22] 2026-01-09 17:40:43,291 | INFO     | will attempt to kill all subprocesses of pid=942404
[2026-01-09 12:41:22] 2026-01-09 17:40:46,425 | INFO     | PID=924713 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 12:41:22] 2026-01-09 17:40:46,425 | INFO     | .. there are 17 such processes running
[2026-01-09 12:41:22] 2026-01-09 17:40:46,448 | INFO     | process IDs to be killed: [942404] (in reverse order)
[2026-01-09 12:41:22] 2026-01-09 17:40:47,379 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 12:41:22] 2026-01-09 17:40:47,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 12:41:22] 2026-01-09 17:40:47,394 | INFO     | did not find any defunct processes belonging to 942404
[2026-01-09 12:41:22] 2026-01-09 17:40:47,483 | INFO     | did not find any defunct processes belonging to 942404
[2026-01-09 12:41:22] 2026-01-09 17:40:47,488 | INFO     | ready for new job
[2026-01-09 12:41:22] 2026-01-09 17:40:47,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 12:41:22] 2026-01-09 17:40:47,492 | INFO     | ***************************************
[2026-01-09 12:41:22] 2026-01-09 17:40:47,544 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 12:41:22] 2026-01-09 17:40:47,544 | INFO     | ***************************************
[2026-01-09 12:41:22] 2026-01-09 17:40:47,544 | INFO     | 
[2026-01-09 12:41:22] 2026-01-09 17:40:47,547 | INFO     | architecture information:
[2026-01-09 12:41:22] 2026-01-09 17:40:47,565 | INFO     | executing command: cat /etc/os-release
[2026-01-09 12:41:22] 2026-01-09 17:40:47,748 | INFO     | cat /etc/os-release:
[2026-01-09 12:41:22] NAME="CentOS Linux"
[2026-01-09 12:41:22] VERSION="7 (Core)"
[2026-01-09 12:41:22] ID="centos"
[2026-01-09 12:41:22] ID_LIKE="rhel fedora"
[2026-01-09 12:41:22] VERSION_ID="7"
[2026-01-09 12:41:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 12:41:22] ANSI_COLOR="0;31"
[2026-01-09 12:41:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 12:41:22] HOME_URL="https://www.centos.org/"
[2026-01-09 12:41:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 12:41:22] 
[2026-01-09 12:41:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 12:41:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 12:41:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 12:41:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 12:41:22] 
[2026-01-09 12:41:22] 2026-01-09 17:40:47,748 | INFO     | ***************************************
[2026-01-09 12:41:22] 2026-01-09 17:40:48,252 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 12:41:22] 2026-01-09 17:40:48,406 | INFO     | sufficient remaining disk space (74316775424 B)
[2026-01-09 12:41:22] 2026-01-09 17:40:48,408 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 12:41:22] 2026-01-09 17:40:48,408 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 12:41:22] 2026-01-09 17:40:48,408 | INFO     | update_server=False
[2026-01-09 12:41:22] 2026-01-09 17:40:48,408 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 12:41:22] 2026-01-09 17:40:48,612 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 12:41:22] 2026-01-09 17:40:48,635 | INFO     | all data control threads have been joined
[2026-01-09 12:41:22] 2026-01-09 17:40:48,637 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:41:22] 2026-01-09 17:40:48,637 | INFO     | aborting loop
[2026-01-09 12:41:22] 2026-01-09 17:40:49,120 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 12:41:22] 2026-01-09 17:40:49,414 | INFO     | [job] retrieve thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:49,559 | INFO     | all payload control threads have been joined
[2026-01-09 12:41:22] 2026-01-09 17:40:49,641 | INFO     | [data] control thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:49,647 | INFO     | [job] job monitor thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:49,651 | INFO     | all job control threads have been joined
[2026-01-09 12:41:22] 2026-01-09 17:40:49,680 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:50,129 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:50,141 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:50,340 | INFO     | [payload] failed_post thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:50,608 | INFO     | [payload] control thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:50,632 | INFO     | [data] copytool_out thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:50,658 | INFO     | [job] control thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:50,676 | INFO     | [data] copytool_in thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:50,683 | INFO     | [job] validate thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:50,727 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:50,917 | INFO     | [payload] validate_post thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:51,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 12:41:22] 2026-01-09 17:40:52,070 | INFO     | [job] queue monitor thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:40:53,133 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 12:41:22] 2026-01-09 17:41:09,984 | INFO     | [monitor] cgroup control has ended
[2026-01-09 12:41:22] 2026-01-09 17:41:11,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140088215037760)>', '<ExcThread(monitor, started 140087857764096)>']
[2026-01-09 12:41:22] 2026-01-09 17:41:16,702 | INFO     | all workflow threads have been joined
[2026-01-09 12:41:22] 2026-01-09 17:41:16,702 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 12:41:22] 2026-01-09 17:41:16,702 | INFO     | traces error code: 0
[2026-01-09 12:41:22] 2026-01-09 17:41:16,702 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 12:41:22] 2026-01-09 17:41:20,165 | INFO     | PID=924713 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 12:41:22] 2026-01-09 17:41:20,165 | INFO     | .. there are 17 such processes running
[2026-01-09 12:41:22] 2026-01-09 17:41:20,191 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 12:41:22] 2026-01-09 17:41:20,191 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 12:41:22] 2026-01-09 17:41:20,191 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 12:41:22] 2026-01-09 17:41:20,191 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 12:41:22] 2026-01-09 17:41:20,192 | INFO     | [monitor] control thread has ended
[2026-01-09 12:41:22] 2026-01-09 17:41:21,773 [wrapper] ==== pilot stdout END ====
[2026-01-09 12:41:22] 2026-01-09 17:41:21,804 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 12:41:22] 2026-01-09 17:41:21,850 [wrapper] pilotpid: 924713
[2026-01-09 12:41:22] 2026-01-09 17:41:21,896 [wrapper] Pilot exit status: 0
[2026-01-09 12:41:22] 2026-01-09 17:41:22,080 [wrapper] pandaids: 6963146965
[2026-01-09 12:41:22] 2026-01-09 17:41:22,286 [wrapper] cleanup supervisor_pilot 3379479 924714
[2026-01-09 12:41:22] 2026-01-09 17:41:22,288 [wrapper] Test setup, not cleaning
[2026-01-09 12:41:22] 2026-01-09 17:41:22,291 [wrapper] apfmon messages muted
[2026-01-09 12:41:22] 2026-01-09 17:41:22,294 [wrapper] ==== wrapper stdout END ====
[2026-01-09 12:41:22] 2026-01-09 17:41:22,296 [wrapper] ==== wrapper stderr END ====
[2026-01-09 12:41:22]  *** Error codes and diagnostics ***
[2026-01-09 12:41:22]     "exeErrorCode": 0,
[2026-01-09 12:41:22]     "exeErrorDiag": "",
[2026-01-09 12:41:22]     "pilotErrorCode": 0,
[2026-01-09 12:41:22]     "pilotErrorDiag": "",
[2026-01-09 12:41:22]  *** Listing of results directory ***
[2026-01-09 12:41:22] total 451740
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 10:02 pilot3.tar.gz
[2026-01-09 12:41:22] -rwx------. 1 boincer umatlas     36322 Jan  8 10:06 runpilot2-wrapper.sh
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 10:07 queuedata.json
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas       100 Jan  8 21:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 12:41:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 21:17 run_atlas
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas       105 Jan  8 21:17 job.xml
[2026-01-09 12:41:22] -rw-r--r--. 2 boincer umatlas 223270431 Jan  8 21:17 EVNT.47898824._001075.pool.root.1
[2026-01-09 12:41:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 21:17 start_atlas.sh
[2026-01-09 12:41:22] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 21:17 shared
[2026-01-09 12:41:22] -rw-r--r--. 2 boincer umatlas    592400 Jan  8 21:17 input.tar.gz
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas         0 Jan  8 21:17 boinc_lockfile
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas      2519 Jan  8 21:17 pandaJob.out
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas        57 Jan  8 21:17 setup.sh.local
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas    989763 Jan  8 21:17 agis_schedconf.cvmfs.json
[2026-01-09 12:41:22] drwx------. 5 boincer umatlas      4096 Jan  8 21:17 pilot3
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas      6842 Jan  9 12:36 init_data.xml
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas 220818809 Jan  9 12:36 HITS.47898826._027268.pool.root.1
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas       531 Jan  9 12:37 boinc_task_state.xml
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas      1051 Jan  9 12:39 memory_monitor_summary.json
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas   1516240 Jan  9 12:39 agis_ddmendpoints.agis.ALL.json
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas    947701 Jan  9 12:39 log.47898826._027268.job.log.tgz.1
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas      7821 Jan  9 12:40 heartbeat.json
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas        95 Jan  9 12:41 pilot_heartbeat.json
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas       822 Jan  9 12:41 pilotlog.txt
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 12:41 boinc_mmap_file
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas        28 Jan  9 12:41 wrapper_checkpoint.txt
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas   6341606 Jan  9 12:41 log.47898826._027268.job.log.1
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas       357 Jan  9 12:41 output.list
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas       620 Jan  9 12:41 runtime_log
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas   7311360 Jan  9 12:41 result.tar.gz
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas      9348 Jan  9 12:41 runtime_log.err
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas       659 Jan  9 12:41 nOtNDm0l6x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWnkKDmjiUhvn.diag
[2026-01-09 12:41:22] -rw-r--r--. 1 boincer umatlas     21284 Jan  9 12:41 stderr.txt
[2026-01-09 12:41:22] HITS file was successfully produced:
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas 220818809 Jan  9 12:36 shared/HITS.pool.root.1
[2026-01-09 12:41:22]  *** Contents of shared directory: ***
[2026-01-09 12:41:22] total 441424
[2026-01-09 12:41:22] -rw-r--r--. 2 boincer umatlas 223270431 Jan  8 21:17 ATLAS.root_0
[2026-01-09 12:41:22] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 21:17 start_atlas.sh
[2026-01-09 12:41:22] -rw-r--r--. 2 boincer umatlas    592400 Jan  8 21:17 input.tar.gz
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas 220818809 Jan  9 12:36 HITS.pool.root.1
[2026-01-09 12:41:22] -rw-------. 1 boincer umatlas   7311360 Jan  9 12:41 result.tar.gz
12:41:24 (919172): run_atlas exited; CPU time 57756.799778
12:41:24 (919172): called boinc_finish(0)

</stderr_txt>
]]>

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