Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:45:37 (3696638): wrapper (7.7.26015): starting
23:45:37 (3696638): wrapper: running run_atlas (--nthreads 9)
[2026-01-08 23:45:38] Arguments: --nthreads 9
[2026-01-08 23:45:38] Threads: 9
[2026-01-08 23:45:38] Checking for CVMFS
[2026-01-08 23:45:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 23:45:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 23:45:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 23:45:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 23:45:38] 2.13.3.0 8313 22444 179776 154931 1 409 40036522 40960000 12167 16776704 0 16356664 99.631 20867318 49818 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 23:45:38] CVMFS is ok
[2026-01-08 23:45:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 23:45:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 23:45:38] Further information can be found at the LHC@home message board.
[2026-01-08 23:45:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 23:45:38] Checking for apptainer binary...
[2026-01-08 23:45:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 23:45:38] Running /usr/bin/apptainer --version
[2026-01-08 23:45:39] apptainer version 1.4.5-2.el9
[2026-01-08 23:45:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 23:45:39] c-210-37-3.aglt2.org
[2026-01-08 23:45:39] apptainer works
[2026-01-08 23:45:39] Set ATHENA_PROC_NUMBER=9
[2026-01-08 23:45:39] Set ATHENA_CORE_NUMBER=9
[2026-01-08 23:45:39] Starting ATLAS job with PandaID=6963146141
[2026-01-08 23:45:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 08:17:30]  *** The last 200 lines of the pilot log: ***
[2026-01-09 08:17:30] 2026-01-09 13:16:46,668 | INFO     | monitor loop #1835: job 0:6963146141 is in state 'finished'
[2026-01-09 08:17:30] 2026-01-09 13:16:46,681 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 08:17:30] 2026-01-09 13:16:48,430 | INFO     | time since job start (30640s) is within the limit (349056.0s)
[2026-01-09 08:17:30] 2026-01-09 13:16:49,188 | INFO     | monitor loop #1836: job 0:6963146141 is in state 'finished'
[2026-01-09 08:17:30] 2026-01-09 13:16:49,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 08:17:30] 2026-01-09 13:16:50,446 | INFO     | time since job start (30642s) is within the limit (349056.0s)
[2026-01-09 08:17:30] 2026-01-09 13:16:51,208 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 08:17:30] 2026-01-09 13:16:51,212 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3074.7876428571435
[2026-01-09 08:17:30] 2026-01-09 13:16:51,235 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963146141/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 08:17:30] 2026-01-09 13:16:51,235 | INFO     | extracted standard info from prmon json
[2026-01-09 08:17:30] 2026-01-09 13:16:51,235 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 08:17:30] 2026-01-09 13:16:51,236 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 08:17:30] 2026-01-09 13:16:51,263 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 08:17:30] 2026-01-09 13:16:51,263 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 08:17:30] 2026-01-09 13:16:51,340 | INFO     | fitting pss+swap vs Time
[2026-01-09 08:17:30] 2026-01-09 13:16:51,340 | INFO     | sum of square deviations: 38994486982.65063
[2026-01-09 08:17:30] 2026-01-09 13:16:51,442 | INFO     | sum of deviations: 103896021407.86427
[2026-01-09 08:17:30] 2026-01-09 13:16:51,442 | INFO     | mean x: 1767949269.3852296
[2026-01-09 08:17:30] 2026-01-09 13:16:51,442 | INFO     | mean y: 2553301.4411177645
[2026-01-09 08:17:30] 2026-01-09 13:16:51,442 | INFO     | intersect: -4707930393.902527
[2026-01-09 08:17:30] 2026-01-09 13:16:51,443 | INFO     | chi2: 2.903813078540776
[2026-01-09 08:17:30] 2026-01-09 13:16:51,443 | INFO     | sum of square deviations: 37838783416.54849
[2026-01-09 08:17:30] 2026-01-09 13:16:51,599 | INFO     | sum of deviations: 134632848652.37929
[2026-01-09 08:17:30] 2026-01-09 13:16:51,599 | INFO     | mean x: 1767949116.8951614
[2026-01-09 08:17:30] 2026-01-09 13:16:51,599 | INFO     | mean y: 2557322.4495967743
[2026-01-09 08:17:30] 2026-01-09 13:16:51,634 | INFO     | intersect: -6287920446.34558
[2026-01-09 08:17:30] 2026-01-09 13:16:51,635 | INFO     | chi2: 2.2127483895231266
[2026-01-09 08:17:30] 2026-01-09 13:16:51,635 | INFO     | current chi2=2.2127483895231266 (change=23.798525260617783 %)
[2026-01-09 08:17:30] 2026-01-09 13:16:51,635 | INFO     | right removable region: 495
[2026-01-09 08:17:30] 2026-01-09 13:16:51,636 | INFO     | sum of square deviations: 37838451391.756134
[2026-01-09 08:17:30] 2026-01-09 13:16:51,677 | INFO     | sum of deviations: -8587323631.185478
[2026-01-09 08:17:30] 2026-01-09 13:16:51,677 | INFO     | mean x: 1767949421.8971775
[2026-01-09 08:17:30] 2026-01-09 13:16:51,677 | INFO     | mean y: 2568101.1532258065
[2026-01-09 08:17:30] 2026-01-09 13:16:51,677 | INFO     | intersect: 403798946.78730553
[2026-01-09 08:17:30] 2026-01-09 13:16:51,678 | INFO     | chi2: 0.8327169485925658
[2026-01-09 08:17:30] 2026-01-09 13:16:51,678 | INFO     | current chi2=0.8327169485925658 (change=71.3233281182471 %)
[2026-01-09 08:17:30] 2026-01-09 13:16:51,715 | INFO     | sum of square deviations: 36705516258.533775
[2026-01-09 08:17:30] 2026-01-09 13:16:51,762 | INFO     | sum of deviations: -20397497721.04683
[2026-01-09 08:17:30] 2026-01-09 13:16:51,762 | INFO     | mean x: 1767949574.407332
[2026-01-09 08:17:30] 2026-01-09 13:16:51,762 | INFO     | mean y: 2569683.735234216
[2026-01-09 08:17:30] 2026-01-09 13:16:51,762 | INFO     | intersect: 985030934.5428745
[2026-01-09 08:17:30] 2026-01-09 13:16:51,763 | INFO     | chi2: 0.8013969106780945
[2026-01-09 08:17:30] 2026-01-09 13:16:51,763 | INFO     | current chi2=0.8013969106780945 (change=3.761186555336429 %)
[2026-01-09 08:17:30] 2026-01-09 13:16:51,763 | INFO     | left removable region: 20
[2026-01-09 08:17:30] 2026-01-09 13:16:51,764 | INFO     | sum of square deviations: 33232791847.271713
[2026-01-09 08:17:30] 2026-01-09 13:16:51,818 | INFO     | monitor loop #1837: job 0:6963146141 is in state 'finished'
[2026-01-09 08:17:30] 2026-01-09 13:16:51,818 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 08:17:30] 2026-01-09 13:16:51,958 | INFO     | sum of deviations: 27568040601.263172
[2026-01-09 08:17:30] 2026-01-09 13:16:51,959 | INFO     | mean x: 1767949696.4442105
[2026-01-09 08:17:30] 2026-01-09 13:16:51,959 | INFO     | mean y: 2571506.3684210526
[2026-01-09 08:17:30] 2026-01-09 13:16:51,959 | INFO     | intersect: -1464019360.7653065
[2026-01-09 08:17:30] 2026-01-09 13:16:51,959 | INFO     | chi2: 0.04282092646824286
[2026-01-09 08:17:30] 2026-01-09 13:16:51,960 | INFO     | current memory leak: 0.83 B/s (using 475 data points, chi2=0.04)
[2026-01-09 08:17:30] 2026-01-09 13:16:51,960 | INFO     | could have reported an average CPU frequency of 3005 MHz (20 samples)
[2026-01-09 08:17:30] 2026-01-09 13:16:51,960 | INFO     | ..............................
[2026-01-09 08:17:30] 2026-01-09 13:16:51,960 | INFO     | . Timing measurements:
[2026-01-09 08:17:30] 2026-01-09 13:16:51,961 | INFO     | . get job = 0 s
[2026-01-09 08:17:30] 2026-01-09 13:16:51,961 | INFO     | . initial setup = 3 s
[2026-01-09 08:17:30] 2026-01-09 13:16:51,961 | INFO     | . payload setup = 13 s
[2026-01-09 08:17:30] 2026-01-09 13:16:51,961 | INFO     | . stage-in = 0 s
[2026-01-09 08:17:30] 2026-01-09 13:16:51,961 | INFO     | . payload execution = 30555 s
[2026-01-09 08:17:30] 2026-01-09 13:16:51,961 | INFO     | . stage-out = 6 s
[2026-01-09 08:17:30] 2026-01-09 13:16:51,961 | INFO     | . log creation = 0 s
[2026-01-09 08:17:30] 2026-01-09 13:16:51,961 | INFO     | ..............................
[2026-01-09 08:17:30] 2026-01-09 13:16:52,874 | INFO     | time since job start (30644s) is within the limit (349056.0s)
[2026-01-09 08:17:30] 2026-01-09 13:16:53,046 | INFO     | 
[2026-01-09 08:17:30] 2026-01-09 13:16:53,046 | INFO     | job summary report
[2026-01-09 08:17:30] 2026-01-09 13:16:53,046 | INFO     | --------------------------------------------------
[2026-01-09 08:17:30] 2026-01-09 13:16:53,046 | INFO     | PanDA job id: 6963146141
[2026-01-09 08:17:30] 2026-01-09 13:16:53,046 | INFO     | task id: 47898826
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | errors: (none)
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | pilot state: finished 
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | transexitcode: 0
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | exeerrorcode: 0
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | exeerrordiag: 
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | exitcode: 0
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | exitmsg: OK
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | cpuconsumptiontime: 55985 s
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | nevents: 400
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | neventsw: 0
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | pid: 3707158
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | pgrp: 3707158
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | corecount: 9
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | event service: False
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | sizes: {0: 2283792, 1: 2283991, 8: 2284253, 11: 2284281, 30573: 2322436, 30581: 2331434, 30584: 2331618, 30624: 2331812}
[2026-01-09 08:17:30] 2026-01-09 13:16:53,047 | INFO     | --------------------------------------------------
[2026-01-09 08:17:30] 2026-01-09 13:16:53,048 | INFO     | 
[2026-01-09 08:17:30] 2026-01-09 13:16:53,048 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 08:17:30] 2026-01-09 13:16:53,362 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,363 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,363 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,363 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 08:17:30] 2026-01-09 13:16:53,364 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,365 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 08:17:30] 2026-01-09 13:16:53,365 | INFO     | job 6963146141 has completed (purged errors)
[2026-01-09 08:17:30] 2026-01-09 13:16:53,365 | INFO     | overall cleanup function is called
[2026-01-09 08:17:30] 2026-01-09 13:16:54,407 | INFO     | --- collectZombieJob: --- 10, [3707158]
[2026-01-09 08:17:30] 2026-01-09 13:16:54,407 | INFO     | zombie collector waiting for pid 3707158
[2026-01-09 08:17:30] 2026-01-09 13:16:54,407 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 08:17:30] 2026-01-09 13:16:54,407 | INFO     | collected zombie processes
[2026-01-09 08:17:30] 2026-01-09 13:16:54,407 | INFO     | will attempt to kill all subprocesses of pid=3707158
[2026-01-09 08:17:30] 2026-01-09 13:16:56,360 | INFO     | process IDs to be killed: [3707158] (in reverse order)
[2026-01-09 08:17:30] 2026-01-09 13:16:56,991 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 08:17:30] 2026-01-09 13:16:56,992 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 08:17:30] 2026-01-09 13:16:57,009 | INFO     | did not find any defunct processes belonging to 3707158
[2026-01-09 08:17:30] 2026-01-09 13:16:57,030 | INFO     | did not find any defunct processes belonging to 3707158
[2026-01-09 08:17:30] 2026-01-09 13:16:57,030 | INFO     | ready for new job
[2026-01-09 08:17:30] 2026-01-09 13:16:57,030 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 08:17:30] 2026-01-09 13:16:57,037 | INFO     | ***************************************
[2026-01-09 08:17:30] 2026-01-09 13:16:57,037 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 08:17:30] 2026-01-09 13:16:57,037 | INFO     | ***************************************
[2026-01-09 08:17:30] 2026-01-09 13:16:57,037 | INFO     | 
[2026-01-09 08:17:30] 2026-01-09 13:16:57,040 | INFO     | architecture information:
[2026-01-09 08:17:30] 2026-01-09 13:16:57,047 | INFO     | executing command: cat /etc/os-release
[2026-01-09 08:17:30] 2026-01-09 13:16:57,187 | INFO     | cat /etc/os-release:
[2026-01-09 08:17:30] NAME="CentOS Linux"
[2026-01-09 08:17:30] VERSION="7 (Core)"
[2026-01-09 08:17:30] ID="centos"
[2026-01-09 08:17:30] ID_LIKE="rhel fedora"
[2026-01-09 08:17:30] VERSION_ID="7"
[2026-01-09 08:17:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 08:17:30] ANSI_COLOR="0;31"
[2026-01-09 08:17:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 08:17:30] HOME_URL="https://www.centos.org/"
[2026-01-09 08:17:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 08:17:30] 
[2026-01-09 08:17:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 08:17:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 08:17:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 08:17:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 08:17:30] 
[2026-01-09 08:17:30] 2026-01-09 13:16:57,188 | INFO     | ***************************************
[2026-01-09 08:17:30] 2026-01-09 13:16:57,693 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 08:17:30] 2026-01-09 13:16:57,813 | INFO     | sufficient remaining disk space (72670511104 B)
[2026-01-09 08:17:30] 2026-01-09 13:16:57,813 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 08:17:30] 2026-01-09 13:16:57,813 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 08:17:30] 2026-01-09 13:16:57,813 | INFO     | update_server=False
[2026-01-09 08:17:30] 2026-01-09 13:16:57,813 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 08:17:30] 2026-01-09 13:16:57,864 | INFO     | all payload control threads have been joined
[2026-01-09 08:17:30] 2026-01-09 13:16:58,051 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 08:17:30] 2026-01-09 13:16:58,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:17:30] 2026-01-09 13:16:58,101 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:17:30] 2026-01-09 13:16:58,101 | INFO     | aborting loop
[2026-01-09 08:17:30] 2026-01-09 13:16:58,629 | INFO     | all data control threads have been joined
[2026-01-09 08:17:30] 2026-01-09 13:16:58,818 | INFO     | [job] retrieve thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:58,870 | INFO     | [payload] control thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:58,928 | INFO     | all job control threads have been joined
[2026-01-09 08:17:30] 2026-01-09 13:16:58,935 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:58,951 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:58,952 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:59,025 | INFO     | [job] validate thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:59,030 | INFO     | [data] copytool_in thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:59,039 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:59,076 | INFO     | [job] queue monitor thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:59,107 | INFO     | [job] job monitor thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:59,158 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 08:17:30] 2026-01-09 13:16:59,411 | INFO     | [payload] failed_post thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:59,634 | INFO     | [data] control thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:59,737 | INFO     | [payload] validate_post thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:16:59,935 | INFO     | [job] control thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:17:00,058 | INFO     | [data] copytool_out thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:17:03,205 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 08:17:30] 2026-01-09 13:17:05,986 | INFO     | [monitor] cgroup control has ended
[2026-01-09 08:17:30] 2026-01-09 13:17:06,677 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140464279406400)>', '<ExcThread(monitor, started 140463902267136)>']
[2026-01-09 08:17:30] 2026-01-09 13:17:11,703 | INFO     | all workflow threads have been joined
[2026-01-09 08:17:30] 2026-01-09 13:17:11,704 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 08:17:30] 2026-01-09 13:17:11,704 | INFO     | traces error code: 0
[2026-01-09 08:17:30] 2026-01-09 13:17:11,705 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 08:17:30] 2026-01-09 13:17:27,344 | INFO     | PID=3700666 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 08:17:30] 2026-01-09 13:17:27,345 | INFO     | .. there are 11 such processes running
[2026-01-09 08:17:30] 2026-01-09 13:17:27,346 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 08:17:30] 2026-01-09 13:17:27,346 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 08:17:30] 2026-01-09 13:17:27,346 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 08:17:30] 2026-01-09 13:17:27,346 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 08:17:30] 2026-01-09 13:17:27,346 | INFO     | [monitor] control thread has ended
[2026-01-09 08:17:30] 2026-01-09 13:17:28,860 [wrapper] ==== pilot stdout END ====
[2026-01-09 08:17:30] 2026-01-09 13:17:28,879 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 08:17:30] 2026-01-09 13:17:28,935 [wrapper] pilotpid: 3700666
[2026-01-09 08:17:30] 2026-01-09 13:17:28,996 [wrapper] Pilot exit status: 0
[2026-01-09 08:17:30] 2026-01-09 13:17:29,074 [wrapper] pandaids: 6963146141
[2026-01-09 08:17:30] 2026-01-09 13:17:29,311 [wrapper] cleanup supervisor_pilot  464271 3700667
[2026-01-09 08:17:30] 2026-01-09 13:17:29,327 [wrapper] Test setup, not cleaning
[2026-01-09 08:17:30] 2026-01-09 13:17:29,338 [wrapper] apfmon messages muted
[2026-01-09 08:17:30] 2026-01-09 13:17:29,363 [wrapper] ==== wrapper stdout END ====
[2026-01-09 08:17:30] 2026-01-09 13:17:29,395 [wrapper] ==== wrapper stderr END ====
[2026-01-09 08:17:30]  *** Error codes and diagnostics ***
[2026-01-09 08:17:30]     "exeErrorCode": 0,
[2026-01-09 08:17:30]     "exeErrorDiag": "",
[2026-01-09 08:17:30]     "pilotErrorCode": 0,
[2026-01-09 08:17:30]     "pilotErrorDiag": "",
[2026-01-09 08:17:30]  *** Listing of results directory ***
[2026-01-09 08:17:30] total 448808
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 10:02 queuedata.json
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 10:02 pilot3.tar.gz
[2026-01-09 08:17:30] -rwx------. 1 boincer umatlas     36322 Jan  8 10:02 runpilot2-wrapper.sh
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas       100 Jan  8 23:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 08:17:30] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 23:45 run_atlas
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas       105 Jan  8 23:45 job.xml
[2026-01-09 08:17:30] -rw-r--r--. 2 boincer umatlas 222965223 Jan  8 23:45 EVNT.47898824._001048.pool.root.1
[2026-01-09 08:17:30] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 23:45 start_atlas.sh
[2026-01-09 08:17:30] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 23:45 shared
[2026-01-09 08:17:30] -rw-r--r--. 2 boincer umatlas    592397 Jan  8 23:45 input.tar.gz
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas         0 Jan  8 23:45 boinc_lockfile
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas      2516 Jan  8 23:45 pandaJob.out
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas        57 Jan  8 23:45 setup.sh.local
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas    989771 Jan  8 23:46 agis_schedconf.cvmfs.json
[2026-01-09 08:17:30] drwx------. 5 boincer umatlas      4096 Jan  8 23:46 pilot3
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas      6843 Jan  9 08:11 init_data.xml
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas 223769559 Jan  9 08:14 HITS.47898826._026571.pool.root.1
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas       531 Jan  9 08:14 boinc_task_state.xml
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas      1053 Jan  9 08:15 memory_monitor_summary.json
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas   1516240 Jan  9 08:16 agis_ddmendpoints.agis.ALL.json
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas    661846 Jan  9 08:16 log.47898826._026571.job.log.tgz.1
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas      7822 Jan  9 08:16 heartbeat.json
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas       823 Jan  9 08:17 pilotlog.txt
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas        95 Jan  9 08:17 pilot_heartbeat.json
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 08:17 boinc_mmap_file
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas        28 Jan  9 08:17 wrapper_checkpoint.txt
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas   3807042 Jan  9 08:17 log.47898826._026571.job.log.1
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas       357 Jan  9 08:17 output.list
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas       620 Jan  9 08:17 runtime_log
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas   4485120 Jan  9 08:17 result.tar.gz
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas      9353 Jan  9 08:17 runtime_log.err
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas       660 Jan  9 08:17 MxJODm5h6x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmIekKDmM0IY3m.diag
[2026-01-09 08:17:30] -rw-r--r--. 1 boincer umatlas     21419 Jan  9 08:17 stderr.txt
[2026-01-09 08:17:30] HITS file was successfully produced:
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas 223769559 Jan  9 08:14 shared/HITS.pool.root.1
[2026-01-09 08:17:30]  *** Contents of shared directory: ***
[2026-01-09 08:17:30] total 441248
[2026-01-09 08:17:30] -rw-r--r--. 2 boincer umatlas 222965223 Jan  8 23:45 ATLAS.root_0
[2026-01-09 08:17:30] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 23:45 start_atlas.sh
[2026-01-09 08:17:30] -rw-r--r--. 2 boincer umatlas    592397 Jan  8 23:45 input.tar.gz
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas 223769559 Jan  9 08:14 HITS.pool.root.1
[2026-01-09 08:17:30] -rw-------. 1 boincer umatlas   4485120 Jan  9 08:17 result.tar.gz
08:17:31 (3696638): run_atlas exited; CPU time 56597.556134
08:17:31 (3696638): called boinc_finish(0)

</stderr_txt>
]]>

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