Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:55:23 (3320521): wrapper (7.7.26015): starting
12:55:23 (3320521): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 12:55:23] Arguments: --nthreads 3
[2026-01-09 12:55:23] Threads: 3
[2026-01-09 12:55:23] Checking for CVMFS
[2026-01-09 12:55:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:55:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:55:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:55:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:55:24] 2.9.2.0 2791136 2121 79304 154942 3 57 21389229 36864000 0 130560 0 1359529 99.988 81141 4599 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 12:55:24] CVMFS is ok
[2026-01-09 12:55:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 12:55:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 12:55:24] Further information can be found at the LHC@home message board.
[2026-01-09 12:55:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:55:24] Checking for apptainer binary...
[2026-01-09 12:55:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:55:24] Running /usr/bin/apptainer --version
[2026-01-09 12:55:24] apptainer version 1.4.1-1.1
[2026-01-09 12:55:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:55:24] thA337a
[2026-01-09 12:55:24] apptainer works
[2026-01-09 12:55:24] Set ATHENA_PROC_NUMBER=3
[2026-01-09 12:55:24] Set ATHENA_CORE_NUMBER=3
[2026-01-09 12:55:24] Starting ATLAS job with PandaID=6963156601
[2026-01-09 12:55:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:47:45]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:47:45] 2026-01-09 13:46:56,548 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:47:45] 2026-01-09 13:46:56,548 | INFO     | job 6963156601 has completed (purged errors)
[2026-01-09 14:47:45] 2026-01-09 13:46:56,549 | INFO     | overall cleanup function is called
[2026-01-09 14:47:45] 2026-01-09 13:46:57,555 | INFO     | --- collectZombieJob: --- 10, [3330702]
[2026-01-09 14:47:45] 2026-01-09 13:46:57,555 | INFO     | zombie collector waiting for pid 3330702
[2026-01-09 14:47:45] 2026-01-09 13:46:57,555 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:47:45] 2026-01-09 13:46:57,555 | INFO     | collected zombie processes
[2026-01-09 14:47:45] 2026-01-09 13:46:57,555 | INFO     | will attempt to kill all subprocesses of pid=3330702
[2026-01-09 14:47:45] 2026-01-09 13:46:57,599 | INFO     | process IDs to be killed: [3330702] (in reverse order)
[2026-01-09 14:47:45] 2026-01-09 13:46:57,623 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:47:45] 2026-01-09 13:46:57,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:47:45] 2026-01-09 13:46:57,624 | INFO     | did not find any defunct processes belonging to 3330702
[2026-01-09 14:47:45] 2026-01-09 13:46:57,625 | INFO     | did not find any defunct processes belonging to 3330702
[2026-01-09 14:47:45] 2026-01-09 13:46:57,625 | INFO     | ready for new job
[2026-01-09 14:47:45] 2026-01-09 13:46:57,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:47:45] 2026-01-09 13:46:57,626 | INFO     | ***************************************
[2026-01-09 14:47:45] 2026-01-09 13:46:57,626 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:47:45] 2026-01-09 13:46:57,626 | INFO     | ***************************************
[2026-01-09 14:47:45] 2026-01-09 13:46:57,626 | INFO     | 
[2026-01-09 14:47:45] 2026-01-09 13:46:57,626 | INFO     | architecture information:
[2026-01-09 14:47:45] 2026-01-09 13:46:57,627 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:47:45] 2026-01-09 13:46:57,635 | INFO     | cat /etc/os-release:
[2026-01-09 14:47:45] NAME="CentOS Linux"
[2026-01-09 14:47:45] VERSION="7 (Core)"
[2026-01-09 14:47:45] ID="centos"
[2026-01-09 14:47:45] ID_LIKE="rhel fedora"
[2026-01-09 14:47:45] VERSION_ID="7"
[2026-01-09 14:47:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:47:45] ANSI_COLOR="0;31"
[2026-01-09 14:47:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:47:45] HOME_URL="https://www.centos.org/"
[2026-01-09 14:47:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:47:45] 
[2026-01-09 14:47:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:47:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:47:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:47:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:47:45] 
[2026-01-09 14:47:45] 2026-01-09 13:46:57,635 | INFO     | ***************************************
[2026-01-09 14:47:45] 2026-01-09 13:46:58,139 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 14:47:45] 2026-01-09 13:46:58,151 | INFO     | sufficient remaining disk space (384286326784 B)
[2026-01-09 14:47:45] 2026-01-09 13:46:58,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:47:45] 2026-01-09 13:46:58,152 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:47:45] 2026-01-09 13:46:58,152 | INFO     | update_server=False
[2026-01-09 14:47:45] 2026-01-09 13:46:58,152 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:47:45] 2026-01-09 13:46:58,152 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:47:45] 2026-01-09 13:46:58,359 | INFO     | all data control threads have been joined
[2026-01-09 14:47:45] 2026-01-09 13:46:58,694 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:47:45] 2026-01-09 13:46:58,709 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:47:45] 2026-01-09 13:46:58,709 | INFO     | aborting loop
[2026-01-09 14:47:45] 2026-01-09 13:46:58,797 | INFO     | all payload control threads have been joined
[2026-01-09 14:47:45] 2026-01-09 13:46:59,157 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:46:59,157 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:46:59,365 | INFO     | [data] control thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:46:59,667 | INFO     | all job control threads have been joined
[2026-01-09 14:47:45] 2026-01-09 13:46:59,715 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:46:59,741 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:46:59,802 | INFO     | [payload] control thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:46:59,892 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:46:59,911 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:47:00,024 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:47:45] 2026-01-09 13:47:00,306 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:47:00,321 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:47:00,328 | INFO     | [job] validate thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:47:00,673 | INFO     | [job] control thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:47:00,700 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:47:00,748 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:47:04,031 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:47:08,775 | INFO     | job.realtimelogging is not enabled
[2026-01-09 14:47:45] 2026-01-09 13:47:09,781 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:47:45] 2026-01-09 13:47:27,898 | INFO     | PID=3324246 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 14:47:45] 2026-01-09 13:47:27,898 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:47:45] 2026-01-09 13:47:27,898 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:47:45] 2026-01-09 13:47:27,899 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:47:45] 2026-01-09 13:47:38,214 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:47:45] 2026-01-09 13:47:40,271 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139836086163264)>', '<ExcThread(monitor, started 139835461326592)>']
[2026-01-09 14:47:45] 2026-01-09 13:47:40,967 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:47:45] 2026-01-09 13:47:40,967 | INFO     | [monitor] control thread has ended
[2026-01-09 14:47:45] 2026-01-09 13:47:45,275 | INFO     | all workflow threads have been joined
[2026-01-09 14:47:45] 2026-01-09 13:47:45,275 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:47:45] 2026-01-09 13:47:45,276 | INFO     | traces error code: 0
[2026-01-09 14:47:45] 2026-01-09 13:47:45,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:47:45] 2026-01-09 13:47:45,324 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:47:45] 2026-01-09 13:47:45,326 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:47:45] 2026-01-09 13:47:45,329 [wrapper] pilotpid: 3324246
[2026-01-09 14:47:45] 2026-01-09 13:47:45,331 [wrapper] Pilot exit status: 0
[2026-01-09 14:47:45] 2026-01-09 13:47:45,338 [wrapper] pandaids: 6963156601
[2026-01-09 14:47:45] 2026-01-09 13:47:45,355 [wrapper] cleanup supervisor_pilot 3345473 3324247
[2026-01-09 14:47:45] 2026-01-09 13:47:45,357 [wrapper] Test setup, not cleaning
[2026-01-09 14:47:45] 2026-01-09 13:47:45,359 [wrapper] apfmon messages muted
[2026-01-09 14:47:45] 2026-01-09 13:47:45,361 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:47:45] 2026-01-09 13:47:45,364 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:47:45]  *** Error codes and diagnostics ***
[2026-01-09 14:47:45]     "exeErrorCode": 0,
[2026-01-09 14:47:45]     "exeErrorDiag": "",
[2026-01-09 14:47:45]     "pilotErrorCode": 0,
[2026-01-09 14:47:45]     "pilotErrorDiag": "",
[2026-01-09 14:47:45]  *** Listing of results directory ***
[2026-01-09 14:47:45] total 446044
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 14:47:45] -rwx------ 1 boinc boinc     36322 Jan  8 20:10 runpilot2-wrapper.sh
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc       100 Jan  9 12:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:47:45] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 12:55 run_atlas
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc       105 Jan  9 12:55 job.xml
[2026-01-09 14:47:45] -rw-r--r-- 2 boinc boinc 226527104 Jan  9 12:55 EVNT.47898824._001206.pool.root.1
[2026-01-09 14:47:45] -rw-r--r-- 2 boinc boinc    592398 Jan  9 12:55 input.tar.gz
[2026-01-09 14:47:45] -rw-r--r-- 2 boinc boinc     15847 Jan  9 12:55 start_atlas.sh
[2026-01-09 14:47:45] drwxrwx--x 2 boinc boinc      4096 Jan  9 12:55 shared
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc         0 Jan  9 12:55 boinc_setup_complete
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc      6446 Jan  9 12:55 init_data.xml
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc         0 Jan  9 12:55 boinc_lockfile
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc      2519 Jan  9 12:55 pandaJob.out
[2026-01-09 14:47:45] -rw------- 1 boinc boinc    989377 Jan  9 12:55 agis_schedconf.cvmfs.json
[2026-01-09 14:47:45] -rw------- 1 boinc boinc   1516240 Jan  9 12:55 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:47:45] drwx------ 5 boinc boinc      4096 Jan  9 12:55 pilot3
[2026-01-09 14:47:45] -rw------- 1 boinc boinc 223799785 Jan  9 14:46 HITS.47898826._031771.pool.root.1
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc       529 Jan  9 14:46 boinc_task_state.xml
[2026-01-09 14:47:45] -rw------- 1 boinc boinc      1015 Jan  9 14:46 memory_monitor_summary.json
[2026-01-09 14:47:45] -rw------- 1 boinc boinc    293574 Jan  9 14:46 log.47898826._031771.job.log.tgz.1
[2026-01-09 14:47:45] -rw------- 1 boinc boinc      7753 Jan  9 14:46 heartbeat.json
[2026-01-09 14:47:45] -rw------- 1 boinc boinc        95 Jan  9 14:47 pilot_heartbeat.json
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc        27 Jan  9 14:47 wrapper_checkpoint.txt
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc      8192 Jan  9 14:47 boinc_mmap_file
[2026-01-09 14:47:45] -rw------- 1 boinc boinc      4824 Jan  9 14:47 pilotlog.txt
[2026-01-09 14:47:45] -rw------- 1 boinc boinc    966389 Jan  9 14:47 log.47898826._031771.job.log.1
[2026-01-09 14:47:45] -rw------- 1 boinc boinc       357 Jan  9 14:47 output.list
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc       620 Jan  9 14:47 runtime_log
[2026-01-09 14:47:45] -rw------- 1 boinc boinc   1280000 Jan  9 14:47 result.tar.gz
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc      8902 Jan  9 14:47 runtime_log.err
[2026-01-09 14:47:45] -rw------- 1 boinc boinc       660 Jan  9 14:47 9TQNDmyZAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzAgKDmaozLom.diag
[2026-01-09 14:47:45] -rw-r--r-- 1 boinc boinc     11002 Jan  9 14:47 stderr.txt
[2026-01-09 14:47:45] HITS file was successfully produced:
[2026-01-09 14:47:45] -rw------- 1 boinc boinc 223799785 Jan  9 14:46 shared/HITS.pool.root.1
[2026-01-09 14:47:45]  *** Contents of shared directory: ***
[2026-01-09 14:47:45] total 441632
[2026-01-09 14:47:45] -rw-r--r-- 2 boinc boinc 226527104 Jan  9 12:55 ATLAS.root_0
[2026-01-09 14:47:45] -rw-r--r-- 2 boinc boinc    592398 Jan  9 12:55 input.tar.gz
[2026-01-09 14:47:45] -rw-r--r-- 2 boinc boinc     15847 Jan  9 12:55 start_atlas.sh
[2026-01-09 14:47:45] -rw------- 1 boinc boinc 223799785 Jan  9 14:46 HITS.pool.root.1
[2026-01-09 14:47:45] -rw------- 1 boinc boinc   1280000 Jan  9 14:47 result.tar.gz
14:47:47 (3320521): run_atlas exited; CPU time 19377.587160
14:47:47 (3320521): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN