Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:46:56 (1766755): wrapper (7.7.26015): starting
16:46:56 (1766755): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 16:46:56] Arguments: --nthreads 4
[2026-01-09 16:46:56] Threads: 4
[2026-01-09 16:46:56] Checking for CVMFS
[2026-01-09 16:46:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:46:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:46:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:46:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:46:57] 2.9.2.0 1035262 2356 94016 154948 0 57 21102595 36864000 0 130560 0 1656368 99.990 87938 4788 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 16:46:57] CVMFS is ok
[2026-01-09 16:46:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:46:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:46:57] Further information can be found at the LHC@home message board.
[2026-01-09 16:46:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:46:57] Checking for apptainer binary...
[2026-01-09 16:46:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:46:57] Running /usr/bin/apptainer --version
[2026-01-09 16:46:57] apptainer version 1.4.1-1.1
[2026-01-09 16:46:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:46:57] thA309
[2026-01-09 16:46:57] apptainer works
[2026-01-09 16:46:57] Set ATHENA_PROC_NUMBER=4
[2026-01-09 16:46:57] Set ATHENA_CORE_NUMBER=4
[2026-01-09 16:46:57] Starting ATLAS job with PandaID=6963156459
[2026-01-09 16:46:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:28:19]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | job 6963156459 has completed (purged errors)
[2026-01-09 18:28:19] 2026-01-09 17:27:43,434 | INFO     | overall cleanup function is called
[2026-01-09 18:28:19] 2026-01-09 17:27:44,441 | INFO     | --- collectZombieJob: --- 10, [1777144]
[2026-01-09 18:28:19] 2026-01-09 17:27:44,441 | INFO     | zombie collector waiting for pid 1777144
[2026-01-09 18:28:19] 2026-01-09 17:27:44,441 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 18:28:19] 2026-01-09 17:27:44,441 | INFO     | collected zombie processes
[2026-01-09 18:28:19] 2026-01-09 17:27:44,441 | INFO     | will attempt to kill all subprocesses of pid=1777144
[2026-01-09 18:28:19] 2026-01-09 17:27:44,493 | INFO     | process IDs to be killed: [1777144] (in reverse order)
[2026-01-09 18:28:19] 2026-01-09 17:27:44,531 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 18:28:19] 2026-01-09 17:27:44,531 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 18:28:19] 2026-01-09 17:27:44,533 | INFO     | did not find any defunct processes belonging to 1777144
[2026-01-09 18:28:19] 2026-01-09 17:27:44,535 | INFO     | did not find any defunct processes belonging to 1777144
[2026-01-09 18:28:19] 2026-01-09 17:27:44,535 | INFO     | ready for new job
[2026-01-09 18:28:19] 2026-01-09 17:27:44,535 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 18:28:19] 2026-01-09 17:27:44,535 | INFO     | ***************************************
[2026-01-09 18:28:19] 2026-01-09 17:27:44,536 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 18:28:19] 2026-01-09 17:27:44,536 | INFO     | ***************************************
[2026-01-09 18:28:19] 2026-01-09 17:27:44,536 | INFO     | 
[2026-01-09 18:28:19] 2026-01-09 17:27:44,536 | INFO     | architecture information:
[2026-01-09 18:28:19] 2026-01-09 17:27:44,536 | INFO     | executing command: cat /etc/os-release
[2026-01-09 18:28:19] 2026-01-09 17:27:44,551 | INFO     | cat /etc/os-release:
[2026-01-09 18:28:19] NAME="CentOS Linux"
[2026-01-09 18:28:19] VERSION="7 (Core)"
[2026-01-09 18:28:19] ID="centos"
[2026-01-09 18:28:19] ID_LIKE="rhel fedora"
[2026-01-09 18:28:19] VERSION_ID="7"
[2026-01-09 18:28:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 18:28:19] ANSI_COLOR="0;31"
[2026-01-09 18:28:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 18:28:19] HOME_URL="https://www.centos.org/"
[2026-01-09 18:28:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 18:28:19] 
[2026-01-09 18:28:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 18:28:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 18:28:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 18:28:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 18:28:19] 
[2026-01-09 18:28:19] 2026-01-09 17:27:44,552 | INFO     | ***************************************
[2026-01-09 18:28:19] 2026-01-09 17:27:45,055 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 18:28:19] 2026-01-09 17:27:45,074 | INFO     | sufficient remaining disk space (238121123840 B)
[2026-01-09 18:28:19] 2026-01-09 17:27:45,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 18:28:19] 2026-01-09 17:27:45,074 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 18:28:19] 2026-01-09 17:27:45,074 | INFO     | update_server=False
[2026-01-09 18:28:19] 2026-01-09 17:27:45,074 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 18:28:19] 2026-01-09 17:27:45,074 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:28:19] 2026-01-09 17:27:45,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:28:19] 2026-01-09 17:27:45,108 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:28:19] 2026-01-09 17:27:45,109 | INFO     | aborting loop
[2026-01-09 18:28:19] 2026-01-09 17:27:45,548 | INFO     | all data control threads have been joined
[2026-01-09 18:28:19] 2026-01-09 17:27:45,598 | INFO     | all job control threads have been joined
[2026-01-09 18:28:19] 2026-01-09 17:27:46,080 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:46,080 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:46,105 | INFO     | all payload control threads have been joined
[2026-01-09 18:28:19] 2026-01-09 17:27:46,114 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:46,320 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:46,554 | INFO     | [data] control thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:46,591 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:46,603 | INFO     | [job] control thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:46,810 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:47,081 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:47,111 | INFO     | [payload] control thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:47,297 | INFO     | [job] validate thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:47,413 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:47,429 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:47,477 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:47,576 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:28:19] 2026-01-09 17:27:51,583 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:27:55,197 | INFO     | job.realtimelogging is not enabled
[2026-01-09 18:28:19] 2026-01-09 17:27:56,202 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:28:19] 2026-01-09 17:28:12,849 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:28:19] 2026-01-09 17:28:13,890 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140498811590464)>', '<ExcThread(monitor, started 140498530436864)>']
[2026-01-09 18:28:19] 2026-01-09 17:28:15,736 | INFO     | PID=1770549 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 18:28:19] 2026-01-09 17:28:15,736 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:28:19] 2026-01-09 17:28:15,736 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:28:19] 2026-01-09 17:28:15,736 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:28:19] 2026-01-09 17:28:15,736 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:28:19] 2026-01-09 17:28:15,736 | INFO     | [monitor] control thread has ended
[2026-01-09 18:28:19] 2026-01-09 17:28:18,898 | INFO     | all workflow threads have been joined
[2026-01-09 18:28:19] 2026-01-09 17:28:18,899 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:28:19] 2026-01-09 17:28:18,899 | INFO     | traces error code: 0
[2026-01-09 18:28:19] 2026-01-09 17:28:18,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:28:19] 2026-01-09 17:28:18,982 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:28:19] 2026-01-09 17:28:18,986 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:28:19] 2026-01-09 17:28:18,990 [wrapper] pilotpid: 1770549
[2026-01-09 18:28:19] 2026-01-09 17:28:18,994 [wrapper] Pilot exit status: 0
[2026-01-09 18:28:19] 2026-01-09 17:28:19,006 [wrapper] pandaids: 6963156459
[2026-01-09 18:28:19] 2026-01-09 17:28:19,031 [wrapper] cleanup supervisor_pilot 1792685 1770550
[2026-01-09 18:28:19] 2026-01-09 17:28:19,035 [wrapper] Test setup, not cleaning
[2026-01-09 18:28:19] 2026-01-09 17:28:19,040 [wrapper] apfmon messages muted
[2026-01-09 18:28:19] 2026-01-09 17:28:19,044 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:28:19] 2026-01-09 17:28:19,047 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:28:19]  *** Error codes and diagnostics ***
[2026-01-09 18:28:19]     "exeErrorCode": 0,
[2026-01-09 18:28:19]     "exeErrorDiag": "",
[2026-01-09 18:28:19]     "pilotErrorCode": 0,
[2026-01-09 18:28:19]     "pilotErrorDiag": "",
[2026-01-09 18:28:19]  *** Listing of results directory ***
[2026-01-09 18:28:19] total 439792
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 18:28:19] -rwx------ 1 boinc boinc     36322 Jan  8 20:10 runpilot2-wrapper.sh
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc       100 Jan  9 16:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:28:19] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 16:46 run_atlas
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc       105 Jan  9 16:46 job.xml
[2026-01-09 18:28:19] -rw-r--r-- 2 boinc boinc 225222444 Jan  9 16:46 EVNT.47898824._000905.pool.root.1
[2026-01-09 18:28:19] -rw-r--r-- 2 boinc boinc    592398 Jan  9 16:46 input.tar.gz
[2026-01-09 18:28:19] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:46 start_atlas.sh
[2026-01-09 18:28:19] drwxrwx--x 2 boinc boinc      4096 Jan  9 16:46 shared
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:46 boinc_setup_complete
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc      6377 Jan  9 16:46 init_data.xml
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:46 boinc_lockfile
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc      2518 Jan  9 16:46 pandaJob.out
[2026-01-09 18:28:19] -rw------- 1 boinc boinc    989377 Jan  9 16:47 agis_schedconf.cvmfs.json
[2026-01-09 18:28:19] -rw------- 1 boinc boinc   1516240 Jan  9 16:47 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:28:19] drwx------ 5 boinc boinc      4096 Jan  9 16:47 pilot3
[2026-01-09 18:28:19] -rw------- 1 boinc boinc 218920965 Jan  9 18:27 HITS.47898826._031629.pool.root.1
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc       529 Jan  9 18:27 boinc_task_state.xml
[2026-01-09 18:28:19] -rw------- 1 boinc boinc      1020 Jan  9 18:27 memory_monitor_summary.json
[2026-01-09 18:28:19] -rw------- 1 boinc boinc    275979 Jan  9 18:27 log.47898826._031629.job.log.tgz.1
[2026-01-09 18:28:19] -rw------- 1 boinc boinc        95 Jan  9 18:27 pilot_heartbeat.json
[2026-01-09 18:28:19] -rw------- 1 boinc boinc      7765 Jan  9 18:27 heartbeat.json
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc        27 Jan  9 18:27 wrapper_checkpoint.txt
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc      8192 Jan  9 18:27 boinc_mmap_file
[2026-01-09 18:28:19] -rw------- 1 boinc boinc      4824 Jan  9 18:28 pilotlog.txt
[2026-01-09 18:28:19] -rw------- 1 boinc boinc    874980 Jan  9 18:28 log.47898826._031629.job.log.1
[2026-01-09 18:28:19] -rw------- 1 boinc boinc       357 Jan  9 18:28 output.list
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc       620 Jan  9 18:28 runtime_log
[2026-01-09 18:28:19] -rw------- 1 boinc boinc   1167360 Jan  9 18:28 result.tar.gz
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc      8897 Jan  9 18:28 runtime_log.err
[2026-01-09 18:28:19] -rw------- 1 boinc boinc       659 Jan  9 18:28 4MuNDmvZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6MlKDmVZhrPn.diag
[2026-01-09 18:28:19] -rw-r--r-- 1 boinc boinc     12641 Jan  9 18:28 stderr.txt
[2026-01-09 18:28:19] HITS file was successfully produced:
[2026-01-09 18:28:19] -rw------- 1 boinc boinc 218920965 Jan  9 18:27 shared/HITS.pool.root.1
[2026-01-09 18:28:19]  *** Contents of shared directory: ***
[2026-01-09 18:28:19] total 435480
[2026-01-09 18:28:19] -rw-r--r-- 2 boinc boinc 225222444 Jan  9 16:46 ATLAS.root_0
[2026-01-09 18:28:19] -rw-r--r-- 2 boinc boinc    592398 Jan  9 16:46 input.tar.gz
[2026-01-09 18:28:19] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:46 start_atlas.sh
[2026-01-09 18:28:19] -rw------- 1 boinc boinc 218920965 Jan  9 18:27 HITS.pool.root.1
[2026-01-09 18:28:19] -rw------- 1 boinc boinc   1167360 Jan  9 18:28 result.tar.gz
18:28:21 (1766755): run_atlas exited; CPU time 23005.325005
18:28:21 (1766755): called boinc_finish(0)

</stderr_txt>
]]>

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