Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:04:11 (1735597): wrapper (7.7.26015): starting
15:04:11 (1735597): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 15:04:11] Arguments: --nthreads 4
[2026-01-09 15:04:11] Threads: 4
[2026-01-09 15:04:11] Checking for CVMFS
[2026-01-09 15:04:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:04:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:04:12] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:04:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:04:12] 2.9.2.0 1035262 2253 94304 154945 2 57 21089014 36864000 0 130560 0 1584970 99.989 83914 4596 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 15:04:12] CVMFS is ok
[2026-01-09 15:04:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:04:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:04:12] Further information can be found at the LHC@home message board.
[2026-01-09 15:04:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:04:12] Checking for apptainer binary...
[2026-01-09 15:04:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:04:12] Running /usr/bin/apptainer --version
[2026-01-09 15:04:12] apptainer version 1.4.1-1.1
[2026-01-09 15:04:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:04:12] thA309
[2026-01-09 15:04:12] apptainer works
[2026-01-09 15:04:12] Set ATHENA_PROC_NUMBER=4
[2026-01-09 15:04:12] Set ATHENA_CORE_NUMBER=4
[2026-01-09 15:04:12] Starting ATLAS job with PandaID=6963156460
[2026-01-09 15:04:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 16:46:34]  *** The last 200 lines of the pilot log: ***
[2026-01-09 16:46:34] 2026-01-09 15:45:38,387 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 16:46:34] 2026-01-09 15:45:38,387 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 16:46:34] 2026-01-09 15:45:38,387 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 16:46:34] 2026-01-09 15:45:38,387 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 16:46:34] 2026-01-09 15:45:38,387 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 16:46:34] 2026-01-09 15:45:38,387 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 16:46:34] 2026-01-09 15:45:38,387 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 16:46:34] 2026-01-09 15:45:38,387 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 16:46:34] 2026-01-09 15:45:38,387 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 16:46:34] 2026-01-09 15:45:38,387 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 16:46:34] 2026-01-09 15:45:38,387 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 16:46:34] 2026-01-09 15:45:38,388 | INFO     | job 6963156460 has completed (purged errors)
[2026-01-09 16:46:34] 2026-01-09 15:45:38,388 | INFO     | overall cleanup function is called
[2026-01-09 16:46:34] 2026-01-09 15:45:39,394 | INFO     | --- collectZombieJob: --- 10, [1745984]
[2026-01-09 16:46:34] 2026-01-09 15:45:39,395 | INFO     | zombie collector waiting for pid 1745984
[2026-01-09 16:46:34] 2026-01-09 15:45:39,395 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 16:46:34] 2026-01-09 15:45:39,395 | INFO     | collected zombie processes
[2026-01-09 16:46:34] 2026-01-09 15:45:39,395 | INFO     | will attempt to kill all subprocesses of pid=1745984
[2026-01-09 16:46:34] 2026-01-09 15:45:39,446 | INFO     | process IDs to be killed: [1745984] (in reverse order)
[2026-01-09 16:46:34] 2026-01-09 15:45:39,484 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 16:46:34] 2026-01-09 15:45:39,484 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 16:46:34] 2026-01-09 15:45:39,486 | INFO     | did not find any defunct processes belonging to 1745984
[2026-01-09 16:46:34] 2026-01-09 15:45:39,487 | INFO     | did not find any defunct processes belonging to 1745984
[2026-01-09 16:46:34] 2026-01-09 15:45:39,488 | INFO     | ready for new job
[2026-01-09 16:46:34] 2026-01-09 15:45:39,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 16:46:34] 2026-01-09 15:45:39,488 | INFO     | ***************************************
[2026-01-09 16:46:34] 2026-01-09 15:45:39,488 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 16:46:34] 2026-01-09 15:45:39,489 | INFO     | ***************************************
[2026-01-09 16:46:34] 2026-01-09 15:45:39,489 | INFO     | 
[2026-01-09 16:46:34] 2026-01-09 15:45:39,489 | INFO     | architecture information:
[2026-01-09 16:46:34] 2026-01-09 15:45:39,489 | INFO     | executing command: cat /etc/os-release
[2026-01-09 16:46:34] 2026-01-09 15:45:39,504 | INFO     | cat /etc/os-release:
[2026-01-09 16:46:34] NAME="CentOS Linux"
[2026-01-09 16:46:34] VERSION="7 (Core)"
[2026-01-09 16:46:34] ID="centos"
[2026-01-09 16:46:34] ID_LIKE="rhel fedora"
[2026-01-09 16:46:34] VERSION_ID="7"
[2026-01-09 16:46:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 16:46:34] ANSI_COLOR="0;31"
[2026-01-09 16:46:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 16:46:34] HOME_URL="https://www.centos.org/"
[2026-01-09 16:46:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 16:46:34] 
[2026-01-09 16:46:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 16:46:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 16:46:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 16:46:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 16:46:34] 
[2026-01-09 16:46:34] 2026-01-09 15:45:39,505 | INFO     | ***************************************
[2026-01-09 16:46:34] 2026-01-09 15:45:40,008 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 16:46:34] 2026-01-09 15:45:40,027 | INFO     | sufficient remaining disk space (238145241088 B)
[2026-01-09 16:46:34] 2026-01-09 15:45:40,027 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 16:46:34] 2026-01-09 15:45:40,027 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 16:46:34] 2026-01-09 15:45:40,027 | INFO     | update_server=False
[2026-01-09 16:46:34] 2026-01-09 15:45:40,027 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 16:46:34] 2026-01-09 15:45:40,027 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:46:34] 2026-01-09 15:45:40,027 | INFO     | aborting loop
[2026-01-09 16:46:34] 2026-01-09 15:45:40,028 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:46:34] 2026-01-09 15:45:40,028 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 16:46:34] 2026-01-09 15:45:40,028 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 16:46:34] 2026-01-09 15:45:40,028 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 16:46:34] 2026-01-09 15:45:40,028 | INFO     | all job control threads have been joined
[2026-01-09 16:46:34] 2026-01-09 15:45:40,028 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 16:46:34] 2026-01-09 15:45:40,029 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 16:46:34] 2026-01-09 15:45:40,121 | INFO     | all data control threads have been joined
[2026-01-09 16:46:34] 2026-01-09 15:45:40,509 | INFO     | all payload control threads have been joined
[2026-01-09 16:46:34] 2026-01-09 15:45:41,033 | INFO     | [job] retrieve thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:41,033 | INFO     | [job] queue monitor thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:41,033 | INFO     | [job] job monitor thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:41,034 | INFO     | [job] control thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:41,127 | INFO     | [data] control thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:41,328 | INFO     | [job] validate thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:41,460 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:41,514 | INFO     | [payload] control thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:41,568 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:41,569 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:41,992 | INFO     | [payload] failed_post thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:42,034 | INFO     | [data] copytool_out thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:42,209 | INFO     | [data] copytool_in thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:42,465 | INFO     | [payload] validate_post thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:43,099 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 16:46:34] 2026-01-09 15:45:47,107 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:45:50,886 | INFO     | job.realtimelogging is not enabled
[2026-01-09 16:46:34] 2026-01-09 15:45:51,891 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 16:46:34] 2026-01-09 15:46:27,639 | INFO     | [monitor] cgroup control has ended
[2026-01-09 16:46:34] 2026-01-09 15:46:28,954 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140523116930880)>', '<ExcThread(monitor, started 140522177939200)>']
[2026-01-09 16:46:34] 2026-01-09 15:46:29,284 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 16:46:34] 2026-01-09 15:46:29,284 | INFO     | [monitor] control thread has ended
[2026-01-09 16:46:34] 2026-01-09 15:46:33,980 | INFO     | all workflow threads have been joined
[2026-01-09 16:46:34] 2026-01-09 15:46:33,980 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 16:46:34] 2026-01-09 15:46:33,980 | INFO     | traces error code: 0
[2026-01-09 16:46:34] 2026-01-09 15:46:33,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 16:46:34] 2026-01-09 15:46:34,064 [wrapper] ==== pilot stdout END ====
[2026-01-09 16:46:34] 2026-01-09 15:46:34,069 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 16:46:34] 2026-01-09 15:46:34,073 [wrapper] pilotpid: 1739386
[2026-01-09 16:46:34] 2026-01-09 15:46:34,077 [wrapper] Pilot exit status: 0
[2026-01-09 16:46:34] 2026-01-09 15:46:34,089 [wrapper] pandaids: 6963156460
[2026-01-09 16:46:34] 2026-01-09 15:46:34,114 [wrapper] cleanup supervisor_pilot 1761512 1739387
[2026-01-09 16:46:34] 2026-01-09 15:46:34,118 [wrapper] Test setup, not cleaning
[2026-01-09 16:46:34] 2026-01-09 15:46:34,122 [wrapper] apfmon messages muted
[2026-01-09 16:46:34] 2026-01-09 15:46:34,126 [wrapper] ==== wrapper stdout END ====
[2026-01-09 16:46:34] 2026-01-09 15:46:34,130 [wrapper] ==== wrapper stderr END ====
[2026-01-09 16:46:34]  *** Error codes and diagnostics ***
[2026-01-09 16:46:34]     "exeErrorCode": 0,
[2026-01-09 16:46:34]     "exeErrorDiag": "",
[2026-01-09 16:46:34]     "pilotErrorCode": 0,
[2026-01-09 16:46:34]     "pilotErrorDiag": "",
[2026-01-09 16:46:34]  *** Listing of results directory ***
[2026-01-09 16:46:34] total 440340
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 16:46:34] -rwx------ 1 boinc boinc     36322 Jan  8 20:10 runpilot2-wrapper.sh
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc       100 Jan  9 15:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 16:46:34] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 15:04 run_atlas
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc       105 Jan  9 15:04 job.xml
[2026-01-09 16:46:34] -rw-r--r-- 2 boinc boinc 225222444 Jan  9 15:04 EVNT.47898824._000905.pool.root.1
[2026-01-09 16:46:34] -rw-r--r-- 2 boinc boinc    592400 Jan  9 15:04 input.tar.gz
[2026-01-09 16:46:34] -rw-r--r-- 2 boinc boinc     15847 Jan  9 15:04 start_atlas.sh
[2026-01-09 16:46:34] drwxrwx--x 2 boinc boinc      4096 Jan  9 15:04 shared
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc         0 Jan  9 15:04 boinc_setup_complete
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc      6377 Jan  9 15:04 init_data.xml
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc         0 Jan  9 15:04 boinc_lockfile
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc      2519 Jan  9 15:04 pandaJob.out
[2026-01-09 16:46:34] -rw------- 1 boinc boinc    989377 Jan  9 15:04 agis_schedconf.cvmfs.json
[2026-01-09 16:46:34] -rw------- 1 boinc boinc   1516240 Jan  9 15:04 agis_ddmendpoints.agis.ALL.json
[2026-01-09 16:46:34] drwx------ 5 boinc boinc      4096 Jan  9 15:04 pilot3
[2026-01-09 16:46:34] -rw------- 1 boinc boinc        95 Jan  9 16:44 pilot_heartbeat.json
[2026-01-09 16:46:34] -rw------- 1 boinc boinc 219462351 Jan  9 16:45 HITS.47898826._031630.pool.root.1
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc       529 Jan  9 16:45 boinc_task_state.xml
[2026-01-09 16:46:34] -rw------- 1 boinc boinc      1022 Jan  9 16:45 memory_monitor_summary.json
[2026-01-09 16:46:34] -rw------- 1 boinc boinc    279340 Jan  9 16:45 log.47898826._031630.job.log.tgz.1
[2026-01-09 16:46:34] -rw------- 1 boinc boinc      7758 Jan  9 16:45 heartbeat.json
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc      8192 Jan  9 16:46 boinc_mmap_file
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc        27 Jan  9 16:46 wrapper_checkpoint.txt
[2026-01-09 16:46:34] -rw------- 1 boinc boinc      4628 Jan  9 16:46 pilotlog.txt
[2026-01-09 16:46:34] -rw------- 1 boinc boinc    883441 Jan  9 16:46 log.47898826._031630.job.log.1
[2026-01-09 16:46:34] -rw------- 1 boinc boinc       357 Jan  9 16:46 output.list
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc       620 Jan  9 16:46 runtime_log
[2026-01-09 16:46:34] -rw------- 1 boinc boinc   1177600 Jan  9 16:46 result.tar.gz
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc      8897 Jan  9 16:46 runtime_log.err
[2026-01-09 16:46:34] -rw------- 1 boinc boinc       659 Jan  9 16:46 AVvNDmvZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7MlKDm0UmPwm.diag
[2026-01-09 16:46:34] -rw-r--r-- 1 boinc boinc     11949 Jan  9 16:46 stderr.txt
[2026-01-09 16:46:34] HITS file was successfully produced:
[2026-01-09 16:46:34] -rw------- 1 boinc boinc 219462351 Jan  9 16:45 shared/HITS.pool.root.1
[2026-01-09 16:46:34]  *** Contents of shared directory: ***
[2026-01-09 16:46:34] total 436020
[2026-01-09 16:46:34] -rw-r--r-- 2 boinc boinc 225222444 Jan  9 15:04 ATLAS.root_0
[2026-01-09 16:46:34] -rw-r--r-- 2 boinc boinc    592400 Jan  9 15:04 input.tar.gz
[2026-01-09 16:46:34] -rw-r--r-- 2 boinc boinc     15847 Jan  9 15:04 start_atlas.sh
[2026-01-09 16:46:34] -rw------- 1 boinc boinc 219462351 Jan  9 16:45 HITS.pool.root.1
[2026-01-09 16:46:34] -rw------- 1 boinc boinc   1177600 Jan  9 16:46 result.tar.gz
16:46:35 (1735597): run_atlas exited; CPU time 23156.826996
16:46:35 (1735597): called boinc_finish(0)

</stderr_txt>
]]>

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