Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:22:47 (685): wrapper (7.7.26015): starting
20:22:47 (685): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 20:22:47] Arguments: --nthreads 8
[2026-01-08 20:22:47] Threads: 8
[2026-01-08 20:22:47] Checking for CVMFS
[2026-01-08 20:22:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 20:22:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 20:22:47] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 20:22:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 20:22:47] 2.11.2.0 2878 120191 79540 154926 2 9 18551523 20275200 1 130560 0 26052573 99.790 7459585 33546 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 20:22:47] CVMFS is ok
[2026-01-08 20:22:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 20:22:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 20:22:47] Further information can be found at the LHC@home message board.
[2026-01-08 20:22:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 20:22:47] Checking for apptainer binary...
[2026-01-08 20:22:47] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 20:22:47] Running /usr/bin/apptainer --version
[2026-01-08 20:22:48] apptainer version 1.3.2-1.el7
[2026-01-08 20:22:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 20:22:49] c-204-27.aglt2.org
[2026-01-08 20:22:49] apptainer works
[2026-01-08 20:22:49] Set ATHENA_PROC_NUMBER=8
[2026-01-08 20:22:49] Set ATHENA_CORE_NUMBER=8
[2026-01-08 20:22:49] Starting ATLAS job with PandaID=6963155849
[2026-01-08 20:22:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 23:20:56]  *** The last 200 lines of the pilot log: ***
[2026-01-08 23:20:56] 2026-01-09 04:20:18,495 | INFO     | time since job start (10630s) is within the limit (349056.0s)
[2026-01-08 23:20:56] 2026-01-09 04:20:19,219 | WARNING  | process 11885 can no longer be monitored (due to stat problems) - aborting
[2026-01-08 23:20:56] 2026-01-09 04:20:19,219 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963155849/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 23:20:56] 2026-01-09 04:20:19,308 | INFO     | number of running child processes to parent process 11885: 1
[2026-01-08 23:20:56] 2026-01-09 04:20:19,308 | INFO     | maximum number of monitored processes: 6
[2026-01-08 23:20:56] 2026-01-09 04:20:20,500 | INFO     | time since job start (10632s) is within the limit (349056.0s)
[2026-01-08 23:20:56] 2026-01-09 04:20:21,811 | INFO     | monitor loop #780: job 0:6963155849 is in state 'finished'
[2026-01-08 23:20:56] 2026-01-09 04:20:21,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-08 23:20:56] 2026-01-09 04:20:22,506 | INFO     | time since job start (10634s) is within the limit (349056.0s)
[2026-01-08 23:20:56] 2026-01-09 04:20:23,188 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-08 23:20:56] 2026-01-09 04:20:23,192 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1679.25
[2026-01-08 23:20:56] 2026-01-09 04:20:23,194 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963155849/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 23:20:56] 2026-01-09 04:20:23,194 | INFO     | extracted standard info from prmon json
[2026-01-08 23:20:56] 2026-01-09 04:20:23,195 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 23:20:56] 2026-01-09 04:20:23,195 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 23:20:56] 2026-01-09 04:20:23,195 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 23:20:56] 2026-01-09 04:20:23,195 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 23:20:56] 2026-01-09 04:20:23,198 | INFO     | fitting pss+swap vs Time
[2026-01-08 23:20:56] 2026-01-09 04:20:23,199 | INFO     | sum of square deviations: 1633472487.5
[2026-01-08 23:20:56] 2026-01-09 04:20:23,200 | INFO     | sum of deviations: -15923582068.999996
[2026-01-08 23:20:56] 2026-01-09 04:20:23,200 | INFO     | mean x: 1767927096.5
[2026-01-08 23:20:56] 2026-01-09 04:20:23,200 | INFO     | mean y: 2557410.1264367816
[2026-01-08 23:20:56] 2026-01-09 04:20:23,200 | INFO     | intersect: 17236843526.700302
[2026-01-08 23:20:56] 2026-01-09 04:20:23,200 | INFO     | chi2: 1.674058946788432
[2026-01-08 23:20:56] 2026-01-09 04:20:23,201 | INFO     | sum of square deviations: 1496660620.0
[2026-01-08 23:20:56] 2026-01-09 04:20:23,202 | INFO     | sum of deviations: -14771736819.999998
[2026-01-08 23:20:56] 2026-01-09 04:20:23,202 | INFO     | mean x: 1767926944.0
[2026-01-08 23:20:56] 2026-01-09 04:20:23,202 | INFO     | mean y: 2558693.7159763314
[2026-01-08 23:20:56] 2026-01-09 04:20:23,202 | INFO     | intersect: 17451639123.021904
[2026-01-08 23:20:56] 2026-01-09 04:20:23,202 | INFO     | chi2: 1.6735168681760444
[2026-01-08 23:20:56] 2026-01-09 04:20:23,202 | INFO     | current chi2=1.6735168681760444 (change=0.0323810946697828 %)
[2026-01-08 23:20:56] 2026-01-09 04:20:23,203 | INFO     | right removable region: 168
[2026-01-08 23:20:56] 2026-01-09 04:20:23,203 | INFO     | sum of square deviations: 1496660620.0
[2026-01-08 23:20:56] 2026-01-09 04:20:23,204 | INFO     | sum of deviations: -42691677831.00001
[2026-01-08 23:20:56] 2026-01-09 04:20:23,204 | INFO     | mean x: 1767927249.0
[2026-01-08 23:20:56] 2026-01-09 04:20:23,204 | INFO     | mean y: 2586856.1952662724
[2026-01-08 23:20:56] 2026-01-09 04:20:23,204 | INFO     | intersect: 50432042628.84339
[2026-01-08 23:20:56] 2026-01-09 04:20:23,204 | INFO     | chi2: 0.184638808562245
[2026-01-08 23:20:56] 2026-01-09 04:20:23,205 | INFO     | current chi2=0.184638808562245 (change=88.97059097491984 %)
[2026-01-08 23:20:56] 2026-01-09 04:20:23,205 | INFO     | sum of square deviations: 1367709365.0
[2026-01-08 23:20:56] 2026-01-09 04:20:23,206 | INFO     | sum of deviations: -42466488797.49997
[2026-01-08 23:20:56] 2026-01-09 04:20:23,206 | INFO     | mean x: 1767927401.5
[2026-01-08 23:20:56] 2026-01-09 04:20:23,206 | INFO     | mean y: 2586524.8597560977
[2026-01-08 23:20:56] 2026-01-09 04:20:23,206 | INFO     | intersect: 54895585806.61358
[2026-01-08 23:20:56] 2026-01-09 04:20:23,206 | INFO     | chi2: 0.1578762828575129
[2026-01-08 23:20:56] 2026-01-09 04:20:23,207 | INFO     | current chi2=0.1578762828575129 (change=14.494529028392192 %)
[2026-01-08 23:20:56] 2026-01-09 04:20:23,207 | INFO     | left removable region: 20
[2026-01-08 23:20:56] 2026-01-09 04:20:23,207 | INFO     | sum of square deviations: 1005179777.0
[2026-01-08 23:20:56] 2026-01-09 04:20:23,208 | INFO     | sum of deviations: -31751756691.5
[2026-01-08 23:20:56] 2026-01-09 04:20:23,208 | INFO     | mean x: 1767927523.5
[2026-01-08 23:20:56] 2026-01-09 04:20:23,208 | INFO     | mean y: 2577227.114864865
[2026-01-08 23:20:56] 2026-01-09 04:20:23,208 | INFO     | intersect: 55848114372.63401
[2026-01-08 23:20:56] 2026-01-09 04:20:23,208 | INFO     | chi2: 0.14964441291367792
[2026-01-08 23:20:56] 2026-01-09 04:20:23,209 | INFO     | current memory leak: -31.59 B/s (using 148 data points, chi2=0.15)
[2026-01-08 23:20:56] 2026-01-09 04:20:23,209 | INFO     | could have reported an average CPU frequency of 2014 MHz (9 samples)
[2026-01-08 23:20:56] 2026-01-09 04:20:23,209 | INFO     | ..............................
[2026-01-08 23:20:56] 2026-01-09 04:20:23,209 | INFO     | . Timing measurements:
[2026-01-08 23:20:56] 2026-01-09 04:20:23,209 | INFO     | . get job = 0 s
[2026-01-08 23:20:56] 2026-01-09 04:20:23,209 | INFO     | . initial setup = 2 s
[2026-01-08 23:20:56] 2026-01-09 04:20:23,210 | INFO     | . payload setup = 8 s
[2026-01-08 23:20:56] 2026-01-09 04:20:23,210 | INFO     | . stage-in = 0 s
[2026-01-08 23:20:56] 2026-01-09 04:20:23,210 | INFO     | . payload execution = 10595 s
[2026-01-08 23:20:56] 2026-01-09 04:20:23,210 | INFO     | . stage-out = 0 s
[2026-01-08 23:20:56] 2026-01-09 04:20:23,210 | INFO     | . log creation = 0 s
[2026-01-08 23:20:56] 2026-01-09 04:20:23,210 | INFO     | ..............................
[2026-01-08 23:20:56] 2026-01-09 04:20:23,301 | INFO     | 
[2026-01-08 23:20:56] 2026-01-09 04:20:23,301 | INFO     | job summary report
[2026-01-08 23:20:56] 2026-01-09 04:20:23,301 | INFO     | --------------------------------------------------
[2026-01-08 23:20:56] 2026-01-09 04:20:23,302 | INFO     | PanDA job id: 6963155849
[2026-01-08 23:20:56] 2026-01-09 04:20:23,302 | INFO     | task id: 47898826
[2026-01-08 23:20:56] 2026-01-09 04:20:23,302 | INFO     | errors: (none)
[2026-01-08 23:20:56] 2026-01-09 04:20:23,302 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 23:20:56] 2026-01-09 04:20:23,302 | INFO     | pilot state: finished 
[2026-01-08 23:20:56] 2026-01-09 04:20:23,302 | INFO     | transexitcode: 0
[2026-01-08 23:20:56] 2026-01-09 04:20:23,303 | INFO     | exeerrorcode: 0
[2026-01-08 23:20:56] 2026-01-09 04:20:23,303 | INFO     | exeerrordiag: 
[2026-01-08 23:20:56] 2026-01-09 04:20:23,303 | INFO     | exitcode: 0
[2026-01-08 23:20:56] 2026-01-09 04:20:23,303 | INFO     | exitmsg: OK
[2026-01-08 23:20:56] 2026-01-09 04:20:23,303 | INFO     | cpuconsumptiontime: 79266 s
[2026-01-08 23:20:56] 2026-01-09 04:20:23,304 | INFO     | nevents: 400
[2026-01-08 23:20:56] 2026-01-09 04:20:23,304 | INFO     | neventsw: 0
[2026-01-08 23:20:56] 2026-01-09 04:20:23,304 | INFO     | pid: 11885
[2026-01-08 23:20:56] 2026-01-09 04:20:23,304 | INFO     | pgrp: 11885
[2026-01-08 23:20:56] 2026-01-09 04:20:23,304 | INFO     | corecount: 8
[2026-01-08 23:20:56] 2026-01-09 04:20:23,304 | INFO     | event service: False
[2026-01-08 23:20:56] 2026-01-09 04:20:23,304 | INFO     | sizes: {0: 2283969, 6: 2284231, 11: 2284259, 10607: 2313203, 10609: 2322201, 10611: 2322257, 10617: 2322643}
[2026-01-08 23:20:56] 2026-01-09 04:20:23,305 | INFO     | --------------------------------------------------
[2026-01-08 23:20:56] 2026-01-09 04:20:23,305 | INFO     | 
[2026-01-08 23:20:56] 2026-01-09 04:20:23,305 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 23:20:56] 2026-01-09 04:20:23,334 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,334 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,334 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,335 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,335 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,335 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,335 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,336 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,336 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,336 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,336 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,337 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,337 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,337 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,337 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,337 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,338 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,338 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 23:20:56] 2026-01-09 04:20:23,338 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,338 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 23:20:56] 2026-01-09 04:20:23,339 | INFO     | job 6963155849 has completed (purged errors)
[2026-01-08 23:20:56] 2026-01-09 04:20:23,339 | INFO     | overall cleanup function is called
[2026-01-08 23:20:56] 2026-01-09 04:20:24,344 | INFO     | --- collectZombieJob: --- 10, [11885]
[2026-01-08 23:20:56] 2026-01-09 04:20:24,344 | INFO     | zombie collector waiting for pid 11885
[2026-01-08 23:20:56] 2026-01-09 04:20:24,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 23:20:56] 2026-01-09 04:20:24,345 | INFO     | collected zombie processes
[2026-01-08 23:20:56] 2026-01-09 04:20:24,345 | INFO     | will attempt to kill all subprocesses of pid=11885
[2026-01-08 23:20:56] 2026-01-09 04:20:24,438 | INFO     | process IDs to be killed: [11885] (in reverse order)
[2026-01-08 23:20:56] 2026-01-09 04:20:24,495 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 23:20:56] 2026-01-09 04:20:24,495 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 23:20:56] 2026-01-09 04:20:24,501 | INFO     | did not find any defunct processes belonging to 11885
[2026-01-08 23:20:56] 2026-01-09 04:20:24,505 | INFO     | did not find any defunct processes belonging to 11885
[2026-01-08 23:20:56] 2026-01-09 04:20:24,505 | INFO     | ready for new job
[2026-01-08 23:20:56] 2026-01-09 04:20:24,506 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 23:20:56] 2026-01-09 04:20:24,507 | INFO     | ***************************************
[2026-01-08 23:20:56] 2026-01-09 04:20:24,508 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 23:20:56] 2026-01-09 04:20:24,508 | INFO     | ***************************************
[2026-01-08 23:20:56] 2026-01-09 04:20:24,508 | INFO     | 
[2026-01-08 23:20:56] 2026-01-09 04:20:24,508 | INFO     | architecture information:
[2026-01-08 23:20:56] 2026-01-09 04:20:24,509 | INFO     | executing command: cat /etc/os-release
[2026-01-08 23:20:56] 2026-01-09 04:20:24,526 | INFO     | cat /etc/os-release:
[2026-01-08 23:20:56] NAME="CentOS Linux"
[2026-01-08 23:20:56] VERSION="7 (Core)"
[2026-01-08 23:20:56] ID="centos"
[2026-01-08 23:20:56] ID_LIKE="rhel fedora"
[2026-01-08 23:20:56] VERSION_ID="7"
[2026-01-08 23:20:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 23:20:56] ANSI_COLOR="0;31"
[2026-01-08 23:20:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 23:20:56] HOME_URL="https://www.centos.org/"
[2026-01-08 23:20:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 23:20:56] 
[2026-01-08 23:20:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 23:20:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 23:20:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 23:20:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 23:20:56] 
[2026-01-08 23:20:56] 2026-01-09 04:20:24,527 | INFO     | ***************************************
[2026-01-08 23:20:56] 2026-01-09 04:20:25,027 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 23:20:56] 2026-01-09 04:20:25,046 | INFO     | sufficient remaining disk space (18502123520 B)
[2026-01-08 23:20:56] 2026-01-09 04:20:25,047 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 23:20:56] 2026-01-09 04:20:25,047 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 23:20:56] 2026-01-09 04:20:25,048 | INFO     | update_server=False
[2026-01-08 23:20:56] 2026-01-09 04:20:25,048 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 23:20:56] 2026-01-09 04:20:25,048 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 23:20:56] 2026-01-09 04:20:25,151 | INFO     | [monitor] cgroup control has ended
[2026-01-08 23:20:56] 2026-01-09 04:20:25,296 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 23:20:56] 2026-01-09 04:20:25,320 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 23:20:56] 2026-01-09 04:20:25,320 | INFO     | aborting loop
[2026-01-08 23:20:56] 2026-01-09 04:20:25,395 | INFO     | all job control threads have been joined
[2026-01-08 23:20:56] 2026-01-09 04:20:25,493 | INFO     | all payload control threads have been joined
[2026-01-08 23:20:56] 2026-01-09 04:20:25,656 | INFO     | all data control threads have been joined
[2026-01-08 23:20:56] 2026-01-09 04:20:26,053 | INFO     | [job] retrieve thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:26,054 | INFO     | [job] queue monitor thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:26,059 | INFO     | [job] validate thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:26,098 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:26,100 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:26,146 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:26,326 | INFO     | [job] job monitor thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:26,401 | INFO     | [job] control thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:26,497 | INFO     | [payload] control thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:26,662 | INFO     | [data] control thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:26,803 | INFO     | [data] copytool_in thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:27,030 | INFO     | [payload] validate_post thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:27,302 | INFO     | [data] copytool_out thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:27,595 | INFO     | [payload] failed_post thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:27,812 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 23:20:56] 2026-01-09 04:20:31,819 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:35,829 | INFO     | job.realtimelogging is not enabled
[2026-01-08 23:20:56] 2026-01-09 04:20:36,835 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 23:20:56] 2026-01-09 04:20:37,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140003562399552)>', '<ExcThread(monitor, started 140003267024640)>']
[2026-01-08 23:20:56] 2026-01-09 04:20:42,135 | INFO     | all workflow threads have been joined
[2026-01-08 23:20:56] 2026-01-09 04:20:42,135 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 23:20:56] 2026-01-09 04:20:42,136 | INFO     | traces error code: 0
[2026-01-08 23:20:56] 2026-01-09 04:20:42,136 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 23:20:56] 2026-01-09 04:20:55,712 | INFO     | PID=4514 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 23:20:56] 2026-01-09 04:20:55,713 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 23:20:56] 2026-01-09 04:20:55,713 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 23:20:56] 2026-01-09 04:20:55,713 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 23:20:56] 2026-01-09 04:20:55,713 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 23:20:56] 2026-01-09 04:20:55,714 | INFO     | [monitor] control thread has ended
[2026-01-08 23:20:56] 2026-01-09 04:20:55,810 [wrapper] ==== pilot stdout END ====
[2026-01-08 23:20:56] 2026-01-09 04:20:55,815 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 23:20:56] 2026-01-09 04:20:55,819 [wrapper] pilotpid: 4514
[2026-01-08 23:20:56] 2026-01-09 04:20:55,824 [wrapper] Pilot exit status: 0
[2026-01-08 23:20:56] 2026-01-09 04:20:55,842 [wrapper] pandaids: 6963155849
[2026-01-08 23:20:56] 2026-01-09 04:20:55,887 [wrapper] cleanup supervisor_pilot 29306 4515
[2026-01-08 23:20:56] 2026-01-09 04:20:55,892 [wrapper] Test setup, not cleaning
[2026-01-08 23:20:56] 2026-01-09 04:20:55,897 [wrapper] apfmon messages muted
[2026-01-08 23:20:56] 2026-01-09 04:20:55,901 [wrapper] ==== wrapper stdout END ====
[2026-01-08 23:20:56] 2026-01-09 04:20:55,906 [wrapper] ==== wrapper stderr END ====
[2026-01-08 23:20:56]  *** Error codes and diagnostics ***
[2026-01-08 23:20:56]     "exeErrorCode": 0,
[2026-01-08 23:20:56]     "exeErrorDiag": "",
[2026-01-08 23:20:56]     "pilotErrorCode": 0,
[2026-01-08 23:20:56]     "pilotErrorDiag": "",
[2026-01-08 23:20:56]  *** Listing of results directory ***
[2026-01-08 23:20:56] total 439612
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 14:06 pilot3.tar.gz
[2026-01-08 23:20:56] -rwx------ 1 boincer umatlas     36322 Jan  8 14:09 runpilot2-wrapper.sh
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 14:11 queuedata.json
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas       100 Jan  8 20:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 23:20:56] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 20:22 run_atlas
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas       105 Jan  8 20:22 job.xml
[2026-01-08 23:20:56] -rw-r--r-- 2 boincer umatlas 225760794 Jan  8 20:22 EVNT.47898824._000882.pool.root.1
[2026-01-08 23:20:56] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 20:22 start_atlas.sh
[2026-01-08 23:20:56] drwxrwx--x 2 boincer umatlas      4096 Jan  8 20:22 shared
[2026-01-08 23:20:56] -rw-r--r-- 2 boincer umatlas    592396 Jan  8 20:22 input.tar.gz
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas         0 Jan  8 20:22 boinc_lockfile
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas      2519 Jan  8 20:22 pandaJob.out
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas        57 Jan  8 20:22 setup.sh.local
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas    989821 Jan  8 20:23 agis_schedconf.cvmfs.json
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas   1516240 Jan  8 20:23 agis_ddmendpoints.agis.ALL.json
[2026-01-08 23:20:56] drwx------ 5 boincer umatlas      4096 Jan  8 20:23 pilot3
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas      5911 Jan  8 23:11 init_data.xml
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas 216695457 Jan  8 23:19 HITS.47898826._031070.pool.root.1
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas       530 Jan  8 23:20 boinc_task_state.xml
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas      1050 Jan  8 23:20 memory_monitor_summary.json
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas    422696 Jan  8 23:20 log.47898826._031070.job.log.tgz.1
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas      7853 Jan  8 23:20 heartbeat.json
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas      8192 Jan  8 23:20 boinc_mmap_file
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas        28 Jan  8 23:20 wrapper_checkpoint.txt
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas        95 Jan  8 23:20 pilot_heartbeat.json
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas       744 Jan  8 23:20 pilotlog.txt
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas   1473565 Jan  8 23:20 log.47898826._031070.job.log.1
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas       357 Jan  8 23:20 output.list
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas       620 Jan  8 23:20 runtime_log
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas   1914880 Jan  8 23:20 result.tar.gz
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas       663 Jan  8 23:20 Uy2MDmYZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvKlKDmGQOdWm.diag
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas      9343 Jan  8 23:20 runtime_log.err
[2026-01-08 23:20:56] -rw-r--r-- 1 boincer umatlas     21283 Jan  8 23:20 stderr.txt
[2026-01-08 23:20:56] HITS file was successfully produced:
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas 216695457 Jan  8 23:19 shared/HITS.pool.root.1
[2026-01-08 23:20:56]  *** Contents of shared directory: ***
[2026-01-08 23:20:56] total 434564
[2026-01-08 23:20:56] -rw-r--r-- 2 boincer umatlas 225760794 Jan  8 20:22 ATLAS.root_0
[2026-01-08 23:20:56] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 20:22 start_atlas.sh
[2026-01-08 23:20:56] -rw-r--r-- 2 boincer umatlas    592396 Jan  8 20:22 input.tar.gz
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas 216695457 Jan  8 23:19 HITS.pool.root.1
[2026-01-08 23:20:56] -rw------- 1 boincer umatlas   1914880 Jan  8 23:20 result.tar.gz
23:20:57 (685): run_atlas exited; CPU time 79204.615006
23:20:57 (685): called boinc_finish(0)

</stderr_txt>
]]>

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