Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:58:53 (8280): wrapper (7.7.26015): starting
06:58:53 (8280): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 06:58:53] Arguments: --nthreads 8
[2026-01-09 06:58:53] Threads: 8
[2026-01-09 06:58:53] Checking for CVMFS
[2026-01-09 06:58:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 06:58:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 06:58:53] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 06:58:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 06:58:54] 2.11.2.0 22272 35025 95976 154933 3 57 12657282 25165824 0 130560 0 15610115 99.849 10900066 2890 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 06:58:54] CVMFS is ok
[2026-01-09 06:58:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 06:58:54] Checking for apptainer binary...
[2026-01-09 06:58:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 06:58:54] Running /usr/bin/apptainer --version
[2026-01-09 06:58:54] apptainer version 1.3.2-1.el7
[2026-01-09 06:58:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 06:58:55] cg-vwn457.simple-grid.lan
[2026-01-09 06:58:55] apptainer works
[2026-01-09 06:58:55] Set ATHENA_PROC_NUMBER=8
[2026-01-09 06:58:55] Set ATHENA_CORE_NUMBER=8
[2026-01-09 06:58:55] Starting ATLAS job with PandaID=6963153185
[2026-01-09 06:58:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 09:41:35]  *** The last 200 lines of the pilot log: ***
[2026-01-09 09:41:35] 2026-01-09 08:41:14,288 | INFO     | chi2: 1.4631731692102952
[2026-01-09 09:41:35] 2026-01-09 08:41:14,288 | INFO     | current chi2=1.4631731692102952 (change=-0.10691653770271631 %)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,288 | INFO     | right removable region: 153
[2026-01-09 09:41:35] 2026-01-09 08:41:14,289 | INFO     | sum of square deviations: 1132458442.5
[2026-01-09 09:41:35] 2026-01-09 08:41:14,290 | INFO     | sum of deviations: -4810995885.000001
[2026-01-09 09:41:35] 2026-01-09 08:41:14,290 | INFO     | mean x: 1767943349.5
[2026-01-09 09:41:35] 2026-01-09 08:41:14,290 | INFO     | mean y: 2516321.922077922
[2026-01-09 09:41:35] 2026-01-09 08:41:14,290 | INFO     | intersect: 7513227408.662568
[2026-01-09 09:41:35] 2026-01-09 08:41:14,290 | INFO     | chi2: 0.07664085581941237
[2026-01-09 09:41:35] 2026-01-09 08:41:14,290 | INFO     | current chi2=0.07664085581941237 (change=94.7564103017055 %)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,291 | INFO     | sum of square deviations: 1025693650.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,292 | INFO     | sum of deviations: -1419526668.9999986
[2026-01-09 09:41:35] 2026-01-09 08:41:14,292 | INFO     | mean x: 1767943502.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,292 | INFO     | mean y: 2511415.812080537
[2026-01-09 09:41:35] 2026-01-09 08:41:14,292 | INFO     | intersect: 2449287751.3916683
[2026-01-09 09:41:35] 2026-01-09 08:41:14,292 | INFO     | chi2: 0.051158026913983634
[2026-01-09 09:41:35] 2026-01-09 08:41:14,293 | INFO     | current chi2=0.051158026913983634 (change=33.24966642527259 %)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,293 | INFO     | sum of square deviations: 925859220.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,294 | INFO     | sum of deviations: 4067348789.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,294 | INFO     | mean x: 1767943654.5
[2026-01-09 09:41:35] 2026-01-09 08:41:14,294 | INFO     | mean y: 2503027.361111111
[2026-01-09 09:41:35] 2026-01-09 08:41:14,294 | INFO     | intersect: -7764167462.943894
[2026-01-09 09:41:35] 2026-01-09 08:41:14,295 | INFO     | chi2: 0.0009796377661772473
[2026-01-09 09:41:35] 2026-01-09 08:41:14,295 | INFO     | current chi2=0.0009796377661772473 (change=98.08507515775698 %)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,295 | INFO     | sum of square deviations: 832722590.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,296 | INFO     | sum of deviations: 3229698619.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,296 | INFO     | mean x: 1767943807.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,296 | INFO     | mean y: 2504396.661870504
[2026-01-09 09:41:35] 2026-01-09 08:41:14,296 | INFO     | intersect: -6854431803.34863
[2026-01-09 09:41:35] 2026-01-09 08:41:14,297 | INFO     | chi2: 0.0006165363192701733
[2026-01-09 09:41:35] 2026-01-09 08:41:14,297 | INFO     | current chi2=0.0006165363192701733 (change=37.06486820368025 %)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,297 | INFO     | sum of square deviations: 746051197.5
[2026-01-09 09:41:35] 2026-01-09 08:41:14,298 | INFO     | sum of deviations: 2600344661.000001
[2026-01-09 09:41:35] 2026-01-09 08:41:14,298 | INFO     | mean x: 1767943959.5
[2026-01-09 09:41:35] 2026-01-09 08:41:14,298 | INFO     | mean y: 2505501.4029850746
[2026-01-09 09:41:35] 2026-01-09 08:41:14,299 | INFO     | intersect: -6159623386.585332
[2026-01-09 09:41:35] 2026-01-09 08:41:14,299 | INFO     | chi2: 0.00042761357547757117
[2026-01-09 09:41:35] 2026-01-09 08:41:14,299 | INFO     | current chi2=0.00042761357547757117 (change=30.642597668250914 %)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,299 | INFO     | sum of square deviations: 665612480.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,300 | INFO     | sum of deviations: 2139763795.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,300 | INFO     | mean x: 1767944112.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,300 | INFO     | mean y: 2506372.403100775
[2026-01-09 09:41:35] 2026-01-09 08:41:14,300 | INFO     | intersect: -5680954975.017887
[2026-01-09 09:41:35] 2026-01-09 08:41:14,301 | INFO     | chi2: 0.00034728358298079373
[2026-01-09 09:41:35] 2026-01-09 08:41:14,301 | INFO     | current chi2=0.00034728358298079373 (change=18.78565066767644 %)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,301 | INFO     | left removable region: 60
[2026-01-09 09:41:35] 2026-01-09 08:41:14,301 | INFO     | sum of square deviations: 249388862.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,302 | INFO     | sum of deviations: 536540201.0000001
[2026-01-09 09:41:35] 2026-01-09 08:41:14,302 | INFO     | mean x: 1767944844.0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,303 | INFO     | mean y: 2509720.7741935486
[2026-01-09 09:41:35] 2026-01-09 08:41:14,303 | INFO     | intersect: -3801082285.49862
[2026-01-09 09:41:35] 2026-01-09 08:41:14,303 | INFO     | chi2: 0.0002113379015164036
[2026-01-09 09:41:35] 2026-01-09 08:41:14,303 | INFO     | current memory leak: 2.15 B/s (using 93 data points, chi2=0.00)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,304 | INFO     | could have reported an average CPU frequency of 2250 MHz (8 samples)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,304 | INFO     | ..............................
[2026-01-09 09:41:35] 2026-01-09 08:41:14,304 | INFO     | . Timing measurements:
[2026-01-09 09:41:35] 2026-01-09 08:41:14,304 | INFO     | . get job = 0 s
[2026-01-09 09:41:35] 2026-01-09 08:41:14,304 | INFO     | . initial setup = 1 s
[2026-01-09 09:41:35] 2026-01-09 08:41:14,304 | INFO     | . payload setup = 6 s
[2026-01-09 09:41:35] 2026-01-09 08:41:14,304 | INFO     | . stage-in = 0 s
[2026-01-09 09:41:35] 2026-01-09 08:41:14,305 | INFO     | . payload execution = 9691 s
[2026-01-09 09:41:35] 2026-01-09 08:41:14,305 | INFO     | . stage-out = 0 s
[2026-01-09 09:41:35] 2026-01-09 08:41:14,305 | INFO     | . log creation = 0 s
[2026-01-09 09:41:35] 2026-01-09 08:41:14,305 | INFO     | ..............................
[2026-01-09 09:41:35] 2026-01-09 08:41:14,413 | INFO     | 
[2026-01-09 09:41:35] 2026-01-09 08:41:14,413 | INFO     | job summary report
[2026-01-09 09:41:35] 2026-01-09 08:41:14,413 | INFO     | --------------------------------------------------
[2026-01-09 09:41:35] 2026-01-09 08:41:14,413 | INFO     | PanDA job id: 6963153185
[2026-01-09 09:41:35] 2026-01-09 08:41:14,413 | INFO     | task id: 47898826
[2026-01-09 09:41:35] 2026-01-09 08:41:14,413 | INFO     | errors: (none)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,413 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 09:41:35] 2026-01-09 08:41:14,413 | INFO     | pilot state: finished 
[2026-01-09 09:41:35] 2026-01-09 08:41:14,414 | INFO     | transexitcode: 0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,414 | INFO     | exeerrorcode: 0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,414 | INFO     | exeerrordiag: 
[2026-01-09 09:41:35] 2026-01-09 08:41:14,414 | INFO     | exitcode: 0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,414 | INFO     | exitmsg: OK
[2026-01-09 09:41:35] 2026-01-09 08:41:14,414 | INFO     | cpuconsumptiontime: 73774 s
[2026-01-09 09:41:35] 2026-01-09 08:41:14,414 | INFO     | nevents: 400
[2026-01-09 09:41:35] 2026-01-09 08:41:14,414 | INFO     | neventsw: 0
[2026-01-09 09:41:35] 2026-01-09 08:41:14,414 | INFO     | pid: 18435
[2026-01-09 09:41:35] 2026-01-09 08:41:14,414 | INFO     | pgrp: 18435
[2026-01-09 09:41:35] 2026-01-09 08:41:14,414 | INFO     | corecount: 8
[2026-01-09 09:41:35] 2026-01-09 08:41:14,415 | INFO     | event service: False
[2026-01-09 09:41:35] 2026-01-09 08:41:14,415 | INFO     | sizes: {0: 2283745, 1: 2284000, 6: 2284262, 12: 2284290, 9701: 2312562, 9702: 2321746, 9709: 2321884}
[2026-01-09 09:41:35] 2026-01-09 08:41:14,415 | INFO     | --------------------------------------------------
[2026-01-09 09:41:35] 2026-01-09 08:41:14,415 | INFO     | 
[2026-01-09 09:41:35] 2026-01-09 08:41:14,415 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2026-01-09 09:41:35] 2026-01-09 08:41:14,438 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,438 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,438 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,438 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,439 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,439 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,439 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,439 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,439 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,439 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,439 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,439 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,439 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,439 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,440 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,440 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,440 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,440 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,440 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,440 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 09:41:35] 2026-01-09 08:41:14,440 | INFO     | job 6963153185 has completed (purged errors)
[2026-01-09 09:41:35] 2026-01-09 08:41:14,440 | INFO     | overall cleanup function is called
[2026-01-09 09:41:35] 2026-01-09 08:41:15,448 | INFO     | --- collectZombieJob: --- 10, [18435]
[2026-01-09 09:41:35] 2026-01-09 08:41:15,449 | INFO     | zombie collector waiting for pid 18435
[2026-01-09 09:41:35] 2026-01-09 08:41:15,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 09:41:35] 2026-01-09 08:41:15,449 | INFO     | collected zombie processes
[2026-01-09 09:41:35] 2026-01-09 08:41:15,449 | INFO     | will attempt to kill all subprocesses of pid=18435
[2026-01-09 09:41:35] 2026-01-09 08:41:15,505 | INFO     | process IDs to be killed: [18435] (in reverse order)
[2026-01-09 09:41:35] 2026-01-09 08:41:15,547 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 09:41:35] 2026-01-09 08:41:15,547 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 09:41:35] 2026-01-09 08:41:15,549 | INFO     | did not find any defunct processes belonging to 18435
[2026-01-09 09:41:35] 2026-01-09 08:41:15,551 | INFO     | did not find any defunct processes belonging to 18435
[2026-01-09 09:41:35] 2026-01-09 08:41:15,551 | INFO     | ready for new job
[2026-01-09 09:41:35] 2026-01-09 08:41:15,551 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 09:41:35] 2026-01-09 08:41:15,553 | INFO     | ***************************************
[2026-01-09 09:41:35] 2026-01-09 08:41:15,553 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 09:41:35] 2026-01-09 08:41:15,553 | INFO     | ***************************************
[2026-01-09 09:41:35] 2026-01-09 08:41:15,553 | INFO     | 
[2026-01-09 09:41:35] 2026-01-09 08:41:15,554 | INFO     | pilot is running in a VM
[2026-01-09 09:41:35] 2026-01-09 08:41:15,554 | INFO     | architecture information:
[2026-01-09 09:41:35] 2026-01-09 08:41:15,554 | INFO     | executing command: cat /etc/os-release
[2026-01-09 09:41:35] 2026-01-09 08:41:15,571 | INFO     | cat /etc/os-release:
[2026-01-09 09:41:35] NAME="CentOS Linux"
[2026-01-09 09:41:35] VERSION="7 (Core)"
[2026-01-09 09:41:35] ID="centos"
[2026-01-09 09:41:35] ID_LIKE="rhel fedora"
[2026-01-09 09:41:35] VERSION_ID="7"
[2026-01-09 09:41:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 09:41:35] ANSI_COLOR="0;31"
[2026-01-09 09:41:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 09:41:35] HOME_URL="https://www.centos.org/"
[2026-01-09 09:41:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 09:41:35] 
[2026-01-09 09:41:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 09:41:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 09:41:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 09:41:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 09:41:35] 
[2026-01-09 09:41:35] 2026-01-09 08:41:15,572 | INFO     | ***************************************
[2026-01-09 09:41:35] 2026-01-09 08:41:16,075 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2026-01-09 09:41:35] 2026-01-09 08:41:16,094 | INFO     | sufficient remaining disk space (498218303488 B)
[2026-01-09 09:41:35] 2026-01-09 08:41:16,094 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 09:41:35] 2026-01-09 08:41:16,094 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 09:41:35] 2026-01-09 08:41:16,095 | INFO     | update_server=False
[2026-01-09 09:41:35] 2026-01-09 08:41:16,095 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 09:41:35] 2026-01-09 08:41:16,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:41:35] 2026-01-09 08:41:16,095 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 09:41:35] 2026-01-09 08:41:16,096 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 09:41:35] 2026-01-09 08:41:16,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 09:41:35] 2026-01-09 08:41:16,096 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 09:41:35] 2026-01-09 08:41:16,095 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 09:41:35] 2026-01-09 08:41:16,581 | INFO     | all data control threads have been joined
[2026-01-09 09:41:35] 2026-01-09 08:41:16,596 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:41:35] 2026-01-09 08:41:16,597 | INFO     | aborting loop
[2026-01-09 09:41:35] 2026-01-09 08:41:16,783 | INFO     | all payload control threads have been joined
[2026-01-09 09:41:35] 2026-01-09 08:41:17,097 | INFO     | [job] retrieve thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:17,101 | INFO     | [job] queue monitor thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:17,121 | INFO     | all job control threads have been joined
[2026-01-09 09:41:35] 2026-01-09 08:41:17,162 | INFO     | [payload] validate_post thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:17,401 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:17,587 | INFO     | [data] control thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:17,602 | INFO     | [job] job monitor thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:17,725 | INFO     | [job] validate thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:17,788 | INFO     | [payload] control thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:17,810 | INFO     | [data] copytool_in thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:17,952 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:18,080 | INFO     | [payload] failed_post thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:18,103 | INFO     | [data] copytool_out thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:18,127 | INFO     | [job] control thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:18,217 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 09:41:35] 2026-01-09 08:41:18,234 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:22,223 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:24,320 | INFO     | [monitor] cgroup control has ended
[2026-01-09 09:41:35] 2026-01-09 08:41:27,093 | INFO     | job.realtimelogging is not enabled
[2026-01-09 09:41:35] 2026-01-09 08:41:28,099 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 09:41:35] 2026-01-09 08:41:29,680 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140612406212416)>', '<ExcThread(monitor, started 140611961206528)>']
[2026-01-09 09:41:35] 2026-01-09 08:41:30,164 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 09:41:35] 2026-01-09 08:41:30,165 | INFO     | [monitor] control thread has ended
[2026-01-09 09:41:35] 2026-01-09 08:41:34,706 | INFO     | all workflow threads have been joined
[2026-01-09 09:41:35] 2026-01-09 08:41:34,706 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 09:41:35] 2026-01-09 08:41:34,707 | INFO     | traces error code: 0
[2026-01-09 09:41:35] 2026-01-09 08:41:34,707 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 09:41:35] 2026-01-09 08:41:34,842 [wrapper] ==== pilot stdout END ====
[2026-01-09 09:41:35] 2026-01-09 08:41:34,845 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 09:41:35] 2026-01-09 08:41:34,849 [wrapper] pilotpid: 11999
[2026-01-09 09:41:35] 2026-01-09 08:41:34,852 [wrapper] Pilot exit status: 0
[2026-01-09 09:41:35] 2026-01-09 08:41:34,877 [wrapper] pandaids: 6963153185
[2026-01-09 09:41:35] 2026-01-09 08:41:34,922 [wrapper] cleanup supervisor_pilot  2562 12000
[2026-01-09 09:41:35] 2026-01-09 08:41:34,926 [wrapper] Test setup, not cleaning
[2026-01-09 09:41:35] 2026-01-09 08:41:34,929 [wrapper] apfmon messages muted
[2026-01-09 09:41:35] 2026-01-09 08:41:34,933 [wrapper] ==== wrapper stdout END ====
[2026-01-09 09:41:35] 2026-01-09 08:41:34,936 [wrapper] ==== wrapper stderr END ====
[2026-01-09 09:41:35]  *** Error codes and diagnostics ***
[2026-01-09 09:41:35]     "exeErrorCode": 0,
[2026-01-09 09:41:35]     "exeErrorDiag": "",
[2026-01-09 09:41:35]     "pilotErrorCode": 0,
[2026-01-09 09:41:35]     "pilotErrorDiag": "",
[2026-01-09 09:41:35]  *** Listing of results directory ***
[2026-01-09 09:41:35] total 438636
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 09:41:35] -rwx------. 1 boinc boinc     36322 Jan  8 20:09 runpilot2-wrapper.sh
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc       100 Jan  9 06:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 09:41:35] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 06:58 run_atlas
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc       105 Jan  9 06:58 job.xml
[2026-01-09 09:41:35] -rw-r--r--. 2 boinc boinc 221578609 Jan  9 06:58 EVNT.47898824._001156.pool.root.1
[2026-01-09 09:41:35] -rw-r--r--. 2 boinc boinc    592396 Jan  9 06:58 input.tar.gz
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc      6390 Jan  9 06:58 init_data.xml
[2026-01-09 09:41:35] -rw-r--r--. 2 boinc boinc     15847 Jan  9 06:58 start_atlas.sh
[2026-01-09 09:41:35] drwxrwx--x. 2 boinc boinc        68 Jan  9 06:58 shared
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc         0 Jan  9 06:58 boinc_lockfile
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc      2520 Jan  9 06:58 pandaJob.out
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc    989771 Jan  9 06:59 agis_schedconf.cvmfs.json
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc   1516240 Jan  9 06:59 agis_ddmendpoints.agis.ALL.json
[2026-01-09 09:41:35] drwx------. 5 boinc boinc      4096 Jan  9 06:59 pilot3
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc 220290613 Jan  9 09:40 HITS.47898826._029880.pool.root.1
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc       530 Jan  9 09:40 boinc_task_state.xml
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc      1015 Jan  9 09:41 memory_monitor_summary.json
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc        95 Jan  9 09:41 pilot_heartbeat.json
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc    387172 Jan  9 09:41 log.47898826._029880.job.log.tgz.1
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc        27 Jan  9 09:41 wrapper_checkpoint.txt
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc      8192 Jan  9 09:41 boinc_mmap_file
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc      7768 Jan  9 09:41 heartbeat.json
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc      4688 Jan  9 09:41 pilotlog.txt
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc   1309124 Jan  9 09:41 log.47898826._029880.job.log.1
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc       357 Jan  9 09:41 output.list
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc       620 Jan  9 09:41 runtime_log
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc   1720320 Jan  9 09:41 result.tar.gz
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc      8832 Jan  9 09:41 runtime_log.err
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc       652 Jan  9 09:41 i28LDm0YAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDms2fKDmBYEdJm.diag
[2026-01-09 09:41:35] -rw-r--r--. 1 boinc boinc     20529 Jan  9 09:41 stderr.txt
[2026-01-09 09:41:35] HITS file was successfully produced:
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc 220290613 Jan  9 09:40 shared/HITS.pool.root.1
[2026-01-09 09:41:35]  *** Contents of shared directory: ***
[2026-01-09 09:41:35] total 433792
[2026-01-09 09:41:35] -rw-r--r--. 2 boinc boinc 221578609 Jan  9 06:58 ATLAS.root_0
[2026-01-09 09:41:35] -rw-r--r--. 2 boinc boinc    592396 Jan  9 06:58 input.tar.gz
[2026-01-09 09:41:35] -rw-r--r--. 2 boinc boinc     15847 Jan  9 06:58 start_atlas.sh
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc 220290613 Jan  9 09:40 HITS.pool.root.1
[2026-01-09 09:41:35] -rw-------. 1 boinc boinc   1720320 Jan  9 09:41 result.tar.gz
09:41:36 (8280): run_atlas exited; CPU time 73836.116859
09:41:36 (8280): called boinc_finish(0)

</stderr_txt>
]]>

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