Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:07:18 (12598): wrapper (7.7.26015): starting
07:07:18 (12598): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 07:07:18] Arguments: --nthreads 8
[2026-01-09 07:07:18] Threads: 8
[2026-01-09 07:07:18] Checking for CVMFS
[2026-01-09 07:07:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:07:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:07:19] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:07:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:07:19] 2.11.2.0 28971 35035 98620 154933 3 57 18622292 25165825 0 130560 0 17584985 99.841 9757579 4151 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 07:07:19] CVMFS is ok
[2026-01-09 07:07:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:07:19] Checking for apptainer binary...
[2026-01-09 07:07:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:07:19] Running /usr/bin/apptainer --version
[2026-01-09 07:07:19] apptainer version 1.3.2-1.el7
[2026-01-09 07:07:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:07:20] cg-vwn489.simple-grid.lan
[2026-01-09 07:07:20] apptainer works
[2026-01-09 07:07:20] Set ATHENA_PROC_NUMBER=8
[2026-01-09 07:07:20] Set ATHENA_CORE_NUMBER=8
[2026-01-09 07:07:20] Starting ATLAS job with PandaID=6963153977
[2026-01-09 07:07:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 09:48:55]  *** The last 200 lines of the pilot log: ***
[2026-01-09 09:48:55] 2026-01-09 08:48:15,446 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 09:48:55] 2026-01-09 08:48:15,915 | INFO     | time since job start (9642s) is within the limit (349056.0s)
[2026-01-09 09:48:55] 2026-01-09 08:48:16,105 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 09:48:55] 2026-01-09 08:48:16,106 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 09:48:55] 2026-01-09 08:48:16,108 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6963153977/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 09:48:55] 2026-01-09 08:48:16,109 | INFO     | extracted standard info from prmon json
[2026-01-09 09:48:55] 2026-01-09 08:48:16,109 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 09:48:55] 2026-01-09 08:48:16,109 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 09:48:55] 2026-01-09 08:48:16,109 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 09:48:55] 2026-01-09 08:48:16,109 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 09:48:55] 2026-01-09 08:48:16,113 | INFO     | fitting pss+swap vs Time
[2026-01-09 09:48:55] 2026-01-09 08:48:16,113 | INFO     | sum of square deviations: 1223016419.5
[2026-01-09 09:48:55] 2026-01-09 08:48:16,114 | INFO     | sum of deviations: 12482602172.500002
[2026-01-09 09:48:55] 2026-01-09 08:48:16,115 | INFO     | mean x: 1767943670.5
[2026-01-09 09:48:55] 2026-01-09 08:48:16,115 | INFO     | mean y: 2477641.7911392404
[2026-01-09 09:48:55] 2026-01-09 08:48:16,115 | INFO     | intersect: -18041873317.34243
[2026-01-09 09:48:55] 2026-01-09 08:48:16,115 | INFO     | chi2: 2.1990870946488927
[2026-01-09 09:48:55] 2026-01-09 08:48:16,115 | INFO     | sum of square deviations: 1110539892.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,116 | INFO     | sum of deviations: 22422310399.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,117 | INFO     | mean x: 1767943518.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,117 | INFO     | mean y: 2490753.8300653594
[2026-01-09 09:48:55] 2026-01-09 08:48:16,117 | INFO     | intersect: -35693100745.4585
[2026-01-09 09:48:55] 2026-01-09 08:48:16,117 | INFO     | chi2: 1.4260194677727611
[2026-01-09 09:48:55] 2026-01-09 08:48:16,117 | INFO     | current chi2=1.4260194677727611 (change=35.154024993246566 %)
[2026-01-09 09:48:55] 2026-01-09 08:48:16,118 | INFO     | sum of square deviations: 1005179777.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,119 | INFO     | sum of deviations: 21715914783.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,119 | INFO     | mean x: 1767943365.5
[2026-01-09 09:48:55] 2026-01-09 08:48:16,119 | INFO     | mean y: 2489731.6756756757
[2026-01-09 09:48:55] 2026-01-09 08:48:16,119 | INFO     | intersect: -38192177873.90651
[2026-01-09 09:48:55] 2026-01-09 08:48:16,120 | INFO     | chi2: 1.4269848794722657
[2026-01-09 09:48:55] 2026-01-09 08:48:16,120 | INFO     | current chi2=1.4269848794722657 (change=-0.06769975595160897 %)
[2026-01-09 09:48:55] 2026-01-09 08:48:16,120 | INFO     | right removable region: 147
[2026-01-09 09:48:55] 2026-01-09 08:48:16,120 | INFO     | sum of square deviations: 1110539892.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,121 | INFO     | sum of deviations: -10061742112.000002
[2026-01-09 09:48:55] 2026-01-09 08:48:16,121 | INFO     | mean x: 1767943823.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,121 | INFO     | mean y: 2507731.581699346
[2026-01-09 09:48:55] 2026-01-09 08:48:16,121 | INFO     | intersect: 16020477859.150404
[2026-01-09 09:48:55] 2026-01-09 08:48:16,122 | INFO     | chi2: 0.8348890495993553
[2026-01-09 09:48:55] 2026-01-09 08:48:16,122 | INFO     | current chi2=0.8348890495993553 (change=62.03474379750957 %)
[2026-01-09 09:48:55] 2026-01-09 08:48:16,122 | INFO     | sum of square deviations: 1005179777.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,123 | INFO     | sum of deviations: -13203285544.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,123 | INFO     | mean x: 1767943975.5
[2026-01-09 09:48:55] 2026-01-09 08:48:16,123 | INFO     | mean y: 2512267.4054054054
[2026-01-09 09:48:55] 2026-01-09 08:48:16,124 | INFO     | intersect: 23224894639.629597
[2026-01-09 09:48:55] 2026-01-09 08:48:16,124 | INFO     | chi2: 0.8018668245494643
[2026-01-09 09:48:55] 2026-01-09 08:48:16,124 | INFO     | current chi2=0.8018668245494643 (change=3.955283048177189 %)
[2026-01-09 09:48:55] 2026-01-09 08:48:16,124 | INFO     | left removable region: 20
[2026-01-09 09:48:55] 2026-01-09 08:48:16,124 | INFO     | sum of square deviations: 635130048.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,125 | INFO     | sum of deviations: -3165122738.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,125 | INFO     | mean x: 1767943945.0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,125 | INFO     | mean y: 2528220.2992125982
[2026-01-09 09:48:55] 2026-01-09 08:48:16,126 | INFO     | intersect: 8812943657.971785
[2026-01-09 09:48:55] 2026-01-09 08:48:16,126 | INFO     | chi2: 0.003699088145035052
[2026-01-09 09:48:55] 2026-01-09 08:48:16,126 | INFO     | current memory leak: -4.98 B/s (using 127 data points, chi2=0.00)
[2026-01-09 09:48:55] 2026-01-09 08:48:16,126 | INFO     | could have reported an average CPU frequency of 2249 MHz (8 samples)
[2026-01-09 09:48:55] 2026-01-09 08:48:16,127 | INFO     | ..............................
[2026-01-09 09:48:55] 2026-01-09 08:48:16,127 | INFO     | . Timing measurements:
[2026-01-09 09:48:55] 2026-01-09 08:48:16,127 | INFO     | . get job = 0 s
[2026-01-09 09:48:55] 2026-01-09 08:48:16,127 | INFO     | . initial setup = 1 s
[2026-01-09 09:48:55] 2026-01-09 08:48:16,127 | INFO     | . payload setup = 6 s
[2026-01-09 09:48:55] 2026-01-09 08:48:16,127 | INFO     | . stage-in = 0 s
[2026-01-09 09:48:55] 2026-01-09 08:48:16,127 | INFO     | . payload execution = 9605 s
[2026-01-09 09:48:55] 2026-01-09 08:48:16,127 | INFO     | . stage-out = 0 s
[2026-01-09 09:48:55] 2026-01-09 08:48:16,128 | INFO     | . log creation = 0 s
[2026-01-09 09:48:55] 2026-01-09 08:48:16,128 | INFO     | ..............................
[2026-01-09 09:48:55] 2026-01-09 08:48:16,235 | INFO     | 
[2026-01-09 09:48:55] 2026-01-09 08:48:16,235 | INFO     | job summary report
[2026-01-09 09:48:55] 2026-01-09 08:48:16,235 | INFO     | --------------------------------------------------
[2026-01-09 09:48:55] 2026-01-09 08:48:16,235 | INFO     | PanDA job id: 6963153977
[2026-01-09 09:48:55] 2026-01-09 08:48:16,235 | INFO     | task id: 47898826
[2026-01-09 09:48:55] 2026-01-09 08:48:16,235 | INFO     | errors: (none)
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | pilot state: finished 
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | transexitcode: 0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | exeerrorcode: 0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | exeerrordiag: 
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | exitcode: 0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | exitmsg: OK
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | cpuconsumptiontime: 72513 s
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | nevents: 400
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | neventsw: 0
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | pid: 22780
[2026-01-09 09:48:55] 2026-01-09 08:48:16,236 | INFO     | pgrp: 22780
[2026-01-09 09:48:55] 2026-01-09 08:48:16,237 | INFO     | corecount: 8
[2026-01-09 09:48:55] 2026-01-09 08:48:16,237 | INFO     | event service: False
[2026-01-09 09:48:55] 2026-01-09 08:48:16,237 | INFO     | sizes: {0: 2283972, 5: 2284234, 11: 2284290, 9616: 2312498, 9618: 2321554, 9627: 2321692}
[2026-01-09 09:48:55] 2026-01-09 08:48:16,237 | INFO     | --------------------------------------------------
[2026-01-09 09:48:55] 2026-01-09 08:48:16,237 | INFO     | 
[2026-01-09 09:48:55] 2026-01-09 08:48:16,237 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-09 09:48:55] 2026-01-09 08:48:16,289 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,289 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,289 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,290 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,290 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,290 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,290 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,290 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,290 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,290 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,290 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,290 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,291 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,291 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,291 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,291 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,291 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,291 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 09:48:55] 2026-01-09 08:48:16,291 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,292 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 09:48:55] 2026-01-09 08:48:16,292 | INFO     | job 6963153977 has completed (purged errors)
[2026-01-09 09:48:55] 2026-01-09 08:48:16,292 | INFO     | overall cleanup function is called
[2026-01-09 09:48:55] 2026-01-09 08:48:17,300 | INFO     | --- collectZombieJob: --- 10, [22780]
[2026-01-09 09:48:55] 2026-01-09 08:48:17,300 | INFO     | zombie collector waiting for pid 22780
[2026-01-09 09:48:55] 2026-01-09 08:48:17,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 09:48:55] 2026-01-09 08:48:17,301 | INFO     | collected zombie processes
[2026-01-09 09:48:55] 2026-01-09 08:48:17,301 | INFO     | will attempt to kill all subprocesses of pid=22780
[2026-01-09 09:48:55] 2026-01-09 08:48:17,357 | INFO     | process IDs to be killed: [22780] (in reverse order)
[2026-01-09 09:48:55] 2026-01-09 08:48:17,409 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 09:48:55] 2026-01-09 08:48:17,410 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 09:48:55] 2026-01-09 08:48:17,412 | INFO     | did not find any defunct processes belonging to 22780
[2026-01-09 09:48:55] 2026-01-09 08:48:17,413 | INFO     | did not find any defunct processes belonging to 22780
[2026-01-09 09:48:55] 2026-01-09 08:48:17,413 | INFO     | ready for new job
[2026-01-09 09:48:55] 2026-01-09 08:48:17,414 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 09:48:55] 2026-01-09 08:48:17,415 | INFO     | ***************************************
[2026-01-09 09:48:55] 2026-01-09 08:48:17,415 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 09:48:55] 2026-01-09 08:48:17,416 | INFO     | ***************************************
[2026-01-09 09:48:55] 2026-01-09 08:48:17,416 | INFO     | 
[2026-01-09 09:48:55] 2026-01-09 08:48:17,416 | INFO     | pilot is running in a VM
[2026-01-09 09:48:55] 2026-01-09 08:48:17,416 | INFO     | architecture information:
[2026-01-09 09:48:55] 2026-01-09 08:48:17,417 | INFO     | executing command: cat /etc/os-release
[2026-01-09 09:48:55] 2026-01-09 08:48:17,443 | INFO     | cat /etc/os-release:
[2026-01-09 09:48:55] NAME="CentOS Linux"
[2026-01-09 09:48:55] VERSION="7 (Core)"
[2026-01-09 09:48:55] ID="centos"
[2026-01-09 09:48:55] ID_LIKE="rhel fedora"
[2026-01-09 09:48:55] VERSION_ID="7"
[2026-01-09 09:48:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 09:48:55] ANSI_COLOR="0;31"
[2026-01-09 09:48:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 09:48:55] HOME_URL="https://www.centos.org/"
[2026-01-09 09:48:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 09:48:55] 
[2026-01-09 09:48:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 09:48:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 09:48:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 09:48:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 09:48:55] 
[2026-01-09 09:48:55] 2026-01-09 08:48:17,444 | INFO     | ***************************************
[2026-01-09 09:48:55] 2026-01-09 08:48:17,947 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-09 09:48:55] 2026-01-09 08:48:17,971 | INFO     | sufficient remaining disk space (499041435648 B)
[2026-01-09 09:48:55] 2026-01-09 08:48:17,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 09:48:55] 2026-01-09 08:48:17,971 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 09:48:55] 2026-01-09 08:48:17,971 | INFO     | update_server=False
[2026-01-09 09:48:55] 2026-01-09 08:48:17,972 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 09:48:55] 2026-01-09 08:48:17,972 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:48:55] 2026-01-09 08:48:18,001 | INFO     | all job control threads have been joined
[2026-01-09 09:48:55] 2026-01-09 08:48:18,006 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 09:48:55] 2026-01-09 08:48:18,106 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 09:48:55] 2026-01-09 08:48:18,370 | INFO     | all data control threads have been joined
[2026-01-09 09:48:55] 2026-01-09 08:48:18,370 | INFO     | all payload control threads have been joined
[2026-01-09 09:48:55] 2026-01-09 08:48:18,956 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:48:55] 2026-01-09 08:48:18,956 | INFO     | aborting loop
[2026-01-09 09:48:55] 2026-01-09 08:48:18,977 | INFO     | [job] retrieve thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:18,978 | INFO     | [job] queue monitor thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:19,007 | INFO     | [job] control thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:19,149 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:19,375 | INFO     | [data] control thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:19,376 | INFO     | [payload] control thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:19,430 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:19,446 | INFO     | [data] copytool_in thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:19,692 | INFO     | [payload] failed_post thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:19,770 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:19,962 | INFO     | [job] job monitor thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:20,012 | INFO     | [data] copytool_out thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:20,093 | INFO     | [job] validate thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:20,129 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:20,538 | INFO     | [payload] validate_post thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:22,113 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 09:48:55] 2026-01-09 08:48:49,000 | INFO     | PID=16333 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 09:48:55] 2026-01-09 08:48:49,001 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 09:48:55] 2026-01-09 08:48:49,001 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 09:48:55] 2026-01-09 08:48:49,002 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 09:48:55] 2026-01-09 08:48:49,218 | INFO     | [monitor] cgroup control has ended
[2026-01-09 09:48:55] 2026-01-09 08:48:50,318 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140461023831872)>', '<ExcThread(monitor, started 140460580394752)>']
[2026-01-09 09:48:55] 2026-01-09 08:48:51,012 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 09:48:55] 2026-01-09 08:48:51,012 | INFO     | [monitor] control thread has ended
[2026-01-09 09:48:55] 2026-01-09 08:48:55,344 | INFO     | all workflow threads have been joined
[2026-01-09 09:48:55] 2026-01-09 08:48:55,344 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 09:48:55] 2026-01-09 08:48:55,345 | INFO     | traces error code: 0
[2026-01-09 09:48:55] 2026-01-09 08:48:55,345 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 09:48:55] 2026-01-09 08:48:55,486 [wrapper] ==== pilot stdout END ====
[2026-01-09 09:48:55] 2026-01-09 08:48:55,490 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 09:48:55] 2026-01-09 08:48:55,493 [wrapper] pilotpid: 16333
[2026-01-09 09:48:55] 2026-01-09 08:48:55,497 [wrapper] Pilot exit status: 0
[2026-01-09 09:48:55] 2026-01-09 08:48:55,516 [wrapper] pandaids: 6963153977
[2026-01-09 09:48:55] 2026-01-09 08:48:55,545 [wrapper] cleanup supervisor_pilot  6875 16334
[2026-01-09 09:48:55] 2026-01-09 08:48:55,551 [wrapper] Test setup, not cleaning
[2026-01-09 09:48:55] 2026-01-09 08:48:55,556 [wrapper] apfmon messages muted
[2026-01-09 09:48:55] 2026-01-09 08:48:55,559 [wrapper] ==== wrapper stdout END ====
[2026-01-09 09:48:55] 2026-01-09 08:48:55,562 [wrapper] ==== wrapper stderr END ====
[2026-01-09 09:48:55]  *** Error codes and diagnostics ***
[2026-01-09 09:48:55]     "exeErrorCode": 0,
[2026-01-09 09:48:55]     "exeErrorDiag": "",
[2026-01-09 09:48:55]     "pilotErrorCode": 0,
[2026-01-09 09:48:55]     "pilotErrorDiag": "",
[2026-01-09 09:48:55]  *** Listing of results directory ***
[2026-01-09 09:48:55] total 443900
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 09:48:55] -rwx------. 1 boinc boinc     36322 Jan  8 20:09 runpilot2-wrapper.sh
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc       100 Jan  9 07:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 09:48:55] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 07:07 run_atlas
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc       105 Jan  9 07:07 job.xml
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc      6390 Jan  9 07:07 init_data.xml
[2026-01-09 09:48:55] -rw-r--r--. 2 boinc boinc 224523841 Jan  9 07:07 EVNT.47898824._001176.pool.root.1
[2026-01-09 09:48:55] -rw-r--r--. 2 boinc boinc     15847 Jan  9 07:07 start_atlas.sh
[2026-01-09 09:48:55] drwxrwx--x. 2 boinc boinc        68 Jan  9 07:07 shared
[2026-01-09 09:48:55] -rw-r--r--. 2 boinc boinc    592396 Jan  9 07:07 input.tar.gz
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc         0 Jan  9 07:07 boinc_lockfile
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc      2520 Jan  9 07:07 pandaJob.out
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc    989771 Jan  9 07:07 agis_schedconf.cvmfs.json
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc   1516240 Jan  9 07:07 agis_ddmendpoints.agis.ALL.json
[2026-01-09 09:48:55] drwx------. 5 boinc boinc      4096 Jan  9 07:07 pilot3
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc 222730936 Jan  9 09:47 HITS.47898826._030393.pool.root.1
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc      1013 Jan  9 09:48 memory_monitor_summary.json
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc       529 Jan  9 09:48 boinc_task_state.xml
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc    402295 Jan  9 09:48 log.47898826._030393.job.log.tgz.1
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc      7771 Jan  9 09:48 heartbeat.json
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc      8192 Jan  9 09:48 boinc_mmap_file
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc        27 Jan  9 09:48 wrapper_checkpoint.txt
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc        95 Jan  9 09:48 pilot_heartbeat.json
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc      4810 Jan  9 09:48 pilotlog.txt
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc   1296629 Jan  9 09:48 log.47898826._030393.job.log.1
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc       357 Jan  9 09:48 output.list
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc       620 Jan  9 09:48 runtime_log
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc   1720320 Jan  9 09:48 result.tar.gz
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc      8832 Jan  9 09:48 runtime_log.err
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc       652 Jan  9 09:48 0AnMDmMZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmrHlKDmhyJsJm.diag
[2026-01-09 09:48:55] -rw-r--r--. 1 boinc boinc     20735 Jan  9 09:48 stderr.txt
[2026-01-09 09:48:55] HITS file was successfully produced:
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc 222730936 Jan  9 09:47 shared/HITS.pool.root.1
[2026-01-09 09:48:55]  *** Contents of shared directory: ***
[2026-01-09 09:48:55] total 439052
[2026-01-09 09:48:55] -rw-r--r--. 2 boinc boinc 224523841 Jan  9 07:07 ATLAS.root_0
[2026-01-09 09:48:55] -rw-r--r--. 2 boinc boinc     15847 Jan  9 07:07 start_atlas.sh
[2026-01-09 09:48:55] -rw-r--r--. 2 boinc boinc    592396 Jan  9 07:07 input.tar.gz
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc 222730936 Jan  9 09:47 HITS.pool.root.1
[2026-01-09 09:48:55] -rw-------. 1 boinc boinc   1720320 Jan  9 09:48 result.tar.gz
09:48:57 (12598): run_atlas exited; CPU time 72573.479040
09:48:57 (12598): called boinc_finish(0)

</stderr_txt>
]]>

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