Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:53:27 (2762079): wrapper (7.7.26015): starting
14:53:27 (2762079): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 14:53:27] Arguments: --nthreads 4
[2026-01-09 14:53:27] Threads: 4
[2026-01-09 14:53:27] Checking for CVMFS
[2026-01-09 14:53:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:53:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:53:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:53:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:53:27] 2.9.2.0 2024436 2727 93140 154945 1 57 25826309 36864001 0 130560 0 1904589 99.990 99012 5191 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 14:53:27] CVMFS is ok
[2026-01-09 14:53:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 14:53:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 14:53:27] Further information can be found at the LHC@home message board.
[2026-01-09 14:53:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:53:27] Checking for apptainer binary...
[2026-01-09 14:53:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:53:27] Running /usr/bin/apptainer --version
[2026-01-09 14:53:27] apptainer version 1.4.1-1.1
[2026-01-09 14:53:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:53:27] magicA250
[2026-01-09 14:53:27] apptainer works
[2026-01-09 14:53:27] Set ATHENA_PROC_NUMBER=4
[2026-01-09 14:53:27] Set ATHENA_CORE_NUMBER=4
[2026-01-09 14:53:27] Starting ATLAS job with PandaID=6963153341
[2026-01-09 14:53:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 16:36:49]  *** The last 200 lines of the pilot log: ***
[2026-01-09 16:36:49] 2026-01-09 15:35:58,541 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 16:36:49] 2026-01-09 15:35:58,541 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 16:36:49] 2026-01-09 15:35:58,541 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 16:36:49] 2026-01-09 15:35:58,541 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 16:36:49] 2026-01-09 15:35:58,541 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 16:36:49] 2026-01-09 15:35:58,541 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 16:36:49] 2026-01-09 15:35:58,541 | INFO     | job 6963153341 has completed (purged errors)
[2026-01-09 16:36:49] 2026-01-09 15:35:58,541 | INFO     | overall cleanup function is called
[2026-01-09 16:36:49] 2026-01-09 15:35:59,548 | INFO     | --- collectZombieJob: --- 10, [2772458]
[2026-01-09 16:36:49] 2026-01-09 15:35:59,548 | INFO     | zombie collector waiting for pid 2772458
[2026-01-09 16:36:49] 2026-01-09 15:35:59,548 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 16:36:49] 2026-01-09 15:35:59,548 | INFO     | collected zombie processes
[2026-01-09 16:36:49] 2026-01-09 15:35:59,548 | INFO     | will attempt to kill all subprocesses of pid=2772458
[2026-01-09 16:36:49] 2026-01-09 15:35:59,593 | INFO     | process IDs to be killed: [2772458] (in reverse order)
[2026-01-09 16:36:49] 2026-01-09 15:35:59,626 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 16:36:49] 2026-01-09 15:35:59,626 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 16:36:49] 2026-01-09 15:35:59,628 | INFO     | did not find any defunct processes belonging to 2772458
[2026-01-09 16:36:49] 2026-01-09 15:35:59,629 | INFO     | did not find any defunct processes belonging to 2772458
[2026-01-09 16:36:49] 2026-01-09 15:35:59,629 | INFO     | ready for new job
[2026-01-09 16:36:49] 2026-01-09 15:35:59,629 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 16:36:49] 2026-01-09 15:35:59,630 | INFO     | ***************************************
[2026-01-09 16:36:49] 2026-01-09 15:35:59,630 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 16:36:49] 2026-01-09 15:35:59,630 | INFO     | ***************************************
[2026-01-09 16:36:49] 2026-01-09 15:35:59,630 | INFO     | 
[2026-01-09 16:36:49] 2026-01-09 15:35:59,630 | INFO     | architecture information:
[2026-01-09 16:36:49] 2026-01-09 15:35:59,631 | INFO     | executing command: cat /etc/os-release
[2026-01-09 16:36:49] 2026-01-09 15:35:59,645 | INFO     | cat /etc/os-release:
[2026-01-09 16:36:49] NAME="CentOS Linux"
[2026-01-09 16:36:49] VERSION="7 (Core)"
[2026-01-09 16:36:49] ID="centos"
[2026-01-09 16:36:49] ID_LIKE="rhel fedora"
[2026-01-09 16:36:49] VERSION_ID="7"
[2026-01-09 16:36:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 16:36:49] ANSI_COLOR="0;31"
[2026-01-09 16:36:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 16:36:49] HOME_URL="https://www.centos.org/"
[2026-01-09 16:36:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 16:36:49] 
[2026-01-09 16:36:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 16:36:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 16:36:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 16:36:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 16:36:49] 
[2026-01-09 16:36:49] 2026-01-09 15:35:59,645 | INFO     | ***************************************
[2026-01-09 16:36:49] 2026-01-09 15:36:00,148 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 16:36:49] 2026-01-09 15:36:00,166 | INFO     | sufficient remaining disk space (333762789376 B)
[2026-01-09 16:36:49] 2026-01-09 15:36:00,166 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 16:36:49] 2026-01-09 15:36:00,166 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 16:36:49] 2026-01-09 15:36:00,166 | INFO     | update_server=False
[2026-01-09 16:36:49] 2026-01-09 15:36:00,166 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 16:36:49] 2026-01-09 15:36:00,617 | INFO     | all data control threads have been joined
[2026-01-09 16:36:49] 2026-01-09 15:36:00,647 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:36:49] 2026-01-09 15:36:00,647 | INFO     | aborting loop
[2026-01-09 16:36:49] 2026-01-09 15:36:00,719 | INFO     | all job control threads have been joined
[2026-01-09 16:36:49] 2026-01-09 15:36:01,172 | INFO     | [job] retrieve thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:01,245 | INFO     | [payload] validate_post thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:01,361 | INFO     | all payload control threads have been joined
[2026-01-09 16:36:49] 2026-01-09 15:36:01,468 | INFO     | [data] copytool_in thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:01,568 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:01,622 | INFO     | [data] control thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:01,624 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 16:36:49] 2026-01-09 15:36:01,653 | INFO     | [job] job monitor thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:01,657 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 16:36:49] 2026-01-09 15:36:01,725 | INFO     | [job] control thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:02,325 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:02,367 | INFO     | [payload] control thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:02,486 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:02,604 | INFO     | [job] validate thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:02,628 | INFO     | [payload] failed_post thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:03,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:36:49] 2026-01-09 15:36:03,630 | INFO     | [data] copytool_out thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:04,063 | INFO     | [job] queue monitor thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:05,664 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:11,201 | INFO     | job.realtimelogging is not enabled
[2026-01-09 16:36:49] 2026-01-09 15:36:12,207 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 16:36:49] 2026-01-09 15:36:31,287 | INFO     | PID=2765879 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 16:36:49] 2026-01-09 15:36:31,287 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 16:36:49] 2026-01-09 15:36:31,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 16:36:49] 2026-01-09 15:36:31,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 16:36:49] 2026-01-09 15:36:43,404 | INFO     | [monitor] cgroup control has ended
[2026-01-09 16:36:49] 2026-01-09 15:36:44,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140448625915712)>', '<ExcThread(monitor, started 140447821317888)>']
[2026-01-09 16:36:49] 2026-01-09 15:36:44,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 16:36:49] 2026-01-09 15:36:44,357 | INFO     | [monitor] control thread has ended
[2026-01-09 16:36:49] 2026-01-09 15:36:49,161 | INFO     | all workflow threads have been joined
[2026-01-09 16:36:49] 2026-01-09 15:36:49,161 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 16:36:49] 2026-01-09 15:36:49,162 | INFO     | traces error code: 0
[2026-01-09 16:36:49] 2026-01-09 15:36:49,162 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 16:36:49] 2026-01-09 15:36:49,241 [wrapper] ==== pilot stdout END ====
[2026-01-09 16:36:49] 2026-01-09 15:36:49,245 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 16:36:49] 2026-01-09 15:36:49,249 [wrapper] pilotpid: 2765879
[2026-01-09 16:36:49] 2026-01-09 15:36:49,253 [wrapper] Pilot exit status: 0
[2026-01-09 16:36:49] 2026-01-09 15:36:49,265 [wrapper] pandaids: 6963153341
[2026-01-09 16:36:49] 2026-01-09 15:36:49,288 [wrapper] cleanup supervisor_pilot 2784877 2765880
[2026-01-09 16:36:49] 2026-01-09 15:36:49,292 [wrapper] Test setup, not cleaning
[2026-01-09 16:36:49] 2026-01-09 15:36:49,296 [wrapper] apfmon messages muted
[2026-01-09 16:36:49] 2026-01-09 15:36:49,300 [wrapper] ==== wrapper stdout END ====
[2026-01-09 16:36:49] 2026-01-09 15:36:49,303 [wrapper] ==== wrapper stderr END ====
[2026-01-09 16:36:49]  *** Error codes and diagnostics ***
[2026-01-09 16:36:49]     "exeErrorCode": 0,
[2026-01-09 16:36:49]     "exeErrorDiag": "",
[2026-01-09 16:36:49]     "pilotErrorCode": 0,
[2026-01-09 16:36:49]     "pilotErrorDiag": "",
[2026-01-09 16:36:49]  *** Listing of results directory ***
[2026-01-09 16:36:49] total 443432
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 16:36:49] -rwx------ 1 boinc boinc     36322 Jan  8 20:09 runpilot2-wrapper.sh
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc       100 Jan  9 14:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 16:36:49] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 14:53 run_atlas
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc       105 Jan  9 14:53 job.xml
[2026-01-09 16:36:49] -rw-r--r-- 2 boinc boinc 223222004 Jan  9 14:53 EVNT.47898824._001161.pool.root.1
[2026-01-09 16:36:49] -rw-r--r-- 2 boinc boinc    592393 Jan  9 14:53 input.tar.gz
[2026-01-09 16:36:49] -rw-r--r-- 2 boinc boinc     15847 Jan  9 14:53 start_atlas.sh
[2026-01-09 16:36:49] drwxrwx--x 2 boinc boinc      4096 Jan  9 14:53 shared
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc         0 Jan  9 14:53 boinc_setup_complete
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc      6378 Jan  9 14:53 init_data.xml
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc         0 Jan  9 14:53 boinc_lockfile
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc      2520 Jan  9 14:53 pandaJob.out
[2026-01-09 16:36:49] -rw------- 1 boinc boinc    989377 Jan  9 14:53 agis_schedconf.cvmfs.json
[2026-01-09 16:36:49] -rw------- 1 boinc boinc   1516240 Jan  9 14:53 agis_ddmendpoints.agis.ALL.json
[2026-01-09 16:36:49] drwx------ 5 boinc boinc      4096 Jan  9 14:53 pilot3
[2026-01-09 16:36:49] -rw------- 1 boinc boinc 224578543 Jan  9 16:35 HITS.47898826._030014.pool.root.1
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc       529 Jan  9 16:35 boinc_task_state.xml
[2026-01-09 16:36:49] -rw------- 1 boinc boinc      1023 Jan  9 16:35 memory_monitor_summary.json
[2026-01-09 16:36:49] -rw------- 1 boinc boinc    292657 Jan  9 16:35 log.47898826._030014.job.log.tgz.1
[2026-01-09 16:36:49] -rw------- 1 boinc boinc      7772 Jan  9 16:35 heartbeat.json
[2026-01-09 16:36:49] -rw------- 1 boinc boinc        95 Jan  9 16:36 pilot_heartbeat.json
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc        27 Jan  9 16:36 wrapper_checkpoint.txt
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc      8192 Jan  9 16:36 boinc_mmap_file
[2026-01-09 16:36:49] -rw------- 1 boinc boinc      4824 Jan  9 16:36 pilotlog.txt
[2026-01-09 16:36:49] -rw------- 1 boinc boinc    892258 Jan  9 16:36 log.47898826._030014.job.log.1
[2026-01-09 16:36:49] -rw------- 1 boinc boinc       357 Jan  9 16:36 output.list
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc       620 Jan  9 16:36 runtime_log
[2026-01-09 16:36:49] -rw------- 1 boinc boinc   1208320 Jan  9 16:36 result.tar.gz
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc      8912 Jan  9 16:36 runtime_log.err
[2026-01-09 16:36:49] -rw------- 1 boinc boinc       662 Jan  9 16:36 R2RKDmBZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3GlKDmrNJ6Lm.diag
[2026-01-09 16:36:49] -rw-r--r-- 1 boinc boinc     11514 Jan  9 16:36 stderr.txt
[2026-01-09 16:36:49] HITS file was successfully produced:
[2026-01-09 16:36:49] -rw------- 1 boinc boinc 224578543 Jan  9 16:35 shared/HITS.pool.root.1
[2026-01-09 16:36:49]  *** Contents of shared directory: ***
[2026-01-09 16:36:49] total 439092
[2026-01-09 16:36:49] -rw-r--r-- 2 boinc boinc 223222004 Jan  9 14:53 ATLAS.root_0
[2026-01-09 16:36:49] -rw-r--r-- 2 boinc boinc    592393 Jan  9 14:53 input.tar.gz
[2026-01-09 16:36:49] -rw-r--r-- 2 boinc boinc     15847 Jan  9 14:53 start_atlas.sh
[2026-01-09 16:36:49] -rw------- 1 boinc boinc 224578543 Jan  9 16:35 HITS.pool.root.1
[2026-01-09 16:36:49] -rw------- 1 boinc boinc   1208320 Jan  9 16:36 result.tar.gz
16:37:12 (2762079): run_atlas exited; CPU time 23124.467928
16:37:12 (2762079): called boinc_finish(0)

</stderr_txt>
]]>

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