Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:44:09 (3488504): wrapper (7.7.26015): starting
16:44:09 (3488504): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 16:44:09] Arguments: --nthreads 3
[2026-01-09 16:44:09] Threads: 3
[2026-01-09 16:44:09] Checking for CVMFS
[2026-01-09 16:44:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:44:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:44:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:44:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:44:09] 2.9.2.0 2900183 2429 81904 154948 0 57 21103260 36864000 0 130560 0 1486762 99.988 87813 5047 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 16:44:09] CVMFS is ok
[2026-01-09 16:44:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:44:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:44:09] Further information can be found at the LHC@home message board.
[2026-01-09 16:44:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:44:09] Checking for apptainer binary...
[2026-01-09 16:44:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:44:09] Running /usr/bin/apptainer --version
[2026-01-09 16:44:09] apptainer version 1.4.1-1.1
[2026-01-09 16:44:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:44:09] thA312a
[2026-01-09 16:44:09] apptainer works
[2026-01-09 16:44:09] Set ATHENA_PROC_NUMBER=3
[2026-01-09 16:44:09] Set ATHENA_CORE_NUMBER=3
[2026-01-09 16:44:09] Starting ATLAS job with PandaID=6963153328
[2026-01-09 16:44:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:36:29]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:36:29] 2026-01-09 17:35:40,324 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 18:36:29] 2026-01-09 17:35:40,324 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 18:36:29] 2026-01-09 17:35:40,324 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 18:36:29] 2026-01-09 17:35:40,324 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 18:36:29] 2026-01-09 17:35:40,324 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 18:36:29] 2026-01-09 17:35:40,324 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 18:36:29] 2026-01-09 17:35:40,324 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 18:36:29] 2026-01-09 17:35:40,324 | INFO     | job 6963153328 has completed (purged errors)
[2026-01-09 18:36:29] 2026-01-09 17:35:40,324 | INFO     | overall cleanup function is called
[2026-01-09 18:36:29] 2026-01-09 17:35:41,331 | INFO     | --- collectZombieJob: --- 10, [3498691]
[2026-01-09 18:36:29] 2026-01-09 17:35:41,331 | INFO     | zombie collector waiting for pid 3498691
[2026-01-09 18:36:29] 2026-01-09 17:35:41,331 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 18:36:29] 2026-01-09 17:35:41,331 | INFO     | collected zombie processes
[2026-01-09 18:36:29] 2026-01-09 17:35:41,331 | INFO     | will attempt to kill all subprocesses of pid=3498691
[2026-01-09 18:36:29] 2026-01-09 17:35:41,382 | INFO     | process IDs to be killed: [3498691] (in reverse order)
[2026-01-09 18:36:29] 2026-01-09 17:35:41,410 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 18:36:29] 2026-01-09 17:35:41,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 18:36:29] 2026-01-09 17:35:41,412 | INFO     | did not find any defunct processes belonging to 3498691
[2026-01-09 18:36:29] 2026-01-09 17:35:41,414 | INFO     | did not find any defunct processes belonging to 3498691
[2026-01-09 18:36:29] 2026-01-09 17:35:41,414 | INFO     | ready for new job
[2026-01-09 18:36:29] 2026-01-09 17:35:41,414 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 18:36:29] 2026-01-09 17:35:41,414 | INFO     | ***************************************
[2026-01-09 18:36:29] 2026-01-09 17:35:41,415 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 18:36:29] 2026-01-09 17:35:41,415 | INFO     | ***************************************
[2026-01-09 18:36:29] 2026-01-09 17:35:41,415 | INFO     | 
[2026-01-09 18:36:29] 2026-01-09 17:35:41,415 | INFO     | architecture information:
[2026-01-09 18:36:29] 2026-01-09 17:35:41,415 | INFO     | executing command: cat /etc/os-release
[2026-01-09 18:36:29] 2026-01-09 17:35:41,424 | INFO     | cat /etc/os-release:
[2026-01-09 18:36:29] NAME="CentOS Linux"
[2026-01-09 18:36:29] VERSION="7 (Core)"
[2026-01-09 18:36:29] ID="centos"
[2026-01-09 18:36:29] ID_LIKE="rhel fedora"
[2026-01-09 18:36:29] VERSION_ID="7"
[2026-01-09 18:36:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 18:36:29] ANSI_COLOR="0;31"
[2026-01-09 18:36:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 18:36:29] HOME_URL="https://www.centos.org/"
[2026-01-09 18:36:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 18:36:29] 
[2026-01-09 18:36:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 18:36:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 18:36:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 18:36:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 18:36:29] 
[2026-01-09 18:36:29] 2026-01-09 17:35:41,425 | INFO     | ***************************************
[2026-01-09 18:36:29] 2026-01-09 17:35:41,928 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 18:36:29] 2026-01-09 17:35:41,942 | INFO     | sufficient remaining disk space (283361935360 B)
[2026-01-09 18:36:29] 2026-01-09 17:35:41,942 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 18:36:29] 2026-01-09 17:35:41,942 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 18:36:29] 2026-01-09 17:35:41,942 | INFO     | update_server=False
[2026-01-09 18:36:29] 2026-01-09 17:35:41,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 18:36:29] 2026-01-09 17:35:41,943 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:36:29] 2026-01-09 17:35:41,943 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:36:29] 2026-01-09 17:35:42,331 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 18:36:29] 2026-01-09 17:35:42,331 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 18:36:29] 2026-01-09 17:35:42,331 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:36:29] 2026-01-09 17:35:42,331 | INFO     | will abort loop
[2026-01-09 18:36:29] 2026-01-09 17:35:42,471 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:36:29] 2026-01-09 17:35:42,659 | INFO     | all payload control threads have been joined
[2026-01-09 18:36:29] 2026-01-09 17:35:42,948 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:42,948 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:43,008 | INFO     | all data control threads have been joined
[2026-01-09 18:36:29] 2026-01-09 17:35:43,103 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:43,194 | INFO     | all job control threads have been joined
[2026-01-09 18:36:29] 2026-01-09 17:35:43,337 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:43,399 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:43,575 | INFO     | [job] validate thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:43,651 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:43,664 | INFO     | [payload] control thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:43,687 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:43,752 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:44,013 | INFO     | [data] control thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:44,200 | INFO     | [job] control thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:44,320 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:44,477 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:45,950 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:35:52,777 | INFO     | job.realtimelogging is not enabled
[2026-01-09 18:36:29] 2026-01-09 17:35:53,782 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:36:29] 2026-01-09 17:36:11,704 | INFO     | PID=3492228 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 18:36:29] 2026-01-09 17:36:11,705 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:36:29] 2026-01-09 17:36:11,705 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:36:29] 2026-01-09 17:36:11,705 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:36:29] 2026-01-09 17:36:23,065 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:36:29] 2026-01-09 17:36:24,316 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140191785449280)>', '<ExcThread(monitor, started 140191012480768)>']
[2026-01-09 18:36:29] 2026-01-09 17:36:24,775 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:36:29] 2026-01-09 17:36:24,775 | INFO     | [monitor] control thread has ended
[2026-01-09 18:36:29] 2026-01-09 17:36:29,342 | INFO     | all workflow threads have been joined
[2026-01-09 18:36:29] 2026-01-09 17:36:29,342 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:36:29] 2026-01-09 17:36:29,342 | INFO     | traces error code: 0
[2026-01-09 18:36:29] 2026-01-09 17:36:29,342 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:36:29] 2026-01-09 17:36:29,396 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:36:29] 2026-01-09 17:36:29,399 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:36:29] 2026-01-09 17:36:29,401 [wrapper] pilotpid: 3492228
[2026-01-09 18:36:29] 2026-01-09 17:36:29,404 [wrapper] Pilot exit status: 0
[2026-01-09 18:36:29] 2026-01-09 17:36:29,411 [wrapper] pandaids: 6963153328
[2026-01-09 18:36:29] 2026-01-09 17:36:29,431 [wrapper] cleanup supervisor_pilot 3513758 3492229
[2026-01-09 18:36:29] 2026-01-09 17:36:29,433 [wrapper] Test setup, not cleaning
[2026-01-09 18:36:29] 2026-01-09 17:36:29,436 [wrapper] apfmon messages muted
[2026-01-09 18:36:29] 2026-01-09 17:36:29,438 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:36:29] 2026-01-09 17:36:29,441 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:36:29]  *** Error codes and diagnostics ***
[2026-01-09 18:36:29]     "exeErrorCode": 0,
[2026-01-09 18:36:29]     "exeErrorDiag": "",
[2026-01-09 18:36:29]     "pilotErrorCode": 0,
[2026-01-09 18:36:29]     "pilotErrorDiag": "",
[2026-01-09 18:36:29]  *** Listing of results directory ***
[2026-01-09 18:36:29] total 434428
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc    579449 Jan  8 20:06 pilot3.tar.gz
[2026-01-09 18:36:29] -rwx------ 1 boinc boinc     36322 Jan  8 20:09 runpilot2-wrapper.sh
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc      5112 Jan  8 20:11 queuedata.json
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc       100 Jan  9 16:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:36:29] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 16:44 run_atlas
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc       105 Jan  9 16:44 job.xml
[2026-01-09 18:36:29] -rw-r--r-- 2 boinc boinc 223222004 Jan  9 16:44 EVNT.47898824._001161.pool.root.1
[2026-01-09 18:36:29] -rw-r--r-- 2 boinc boinc    592393 Jan  9 16:44 input.tar.gz
[2026-01-09 18:36:29] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:44 start_atlas.sh
[2026-01-09 18:36:29] drwxrwx--x 2 boinc boinc      4096 Jan  9 16:44 shared
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:44 boinc_setup_complete
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc      6447 Jan  9 16:44 init_data.xml
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc         0 Jan  9 16:44 boinc_lockfile
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc      2520 Jan  9 16:44 pandaJob.out
[2026-01-09 18:36:29] -rw------- 1 boinc boinc    989377 Jan  9 16:44 agis_schedconf.cvmfs.json
[2026-01-09 18:36:29] -rw------- 1 boinc boinc   1516240 Jan  9 16:44 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:36:29] drwx------ 5 boinc boinc      4096 Jan  9 16:44 pilot3
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc       529 Jan  9 18:35 boinc_task_state.xml
[2026-01-09 18:36:29] -rw------- 1 boinc boinc 215269125 Jan  9 18:35 HITS.47898826._030001.pool.root.1
[2026-01-09 18:36:29] -rw------- 1 boinc boinc      1014 Jan  9 18:35 memory_monitor_summary.json
[2026-01-09 18:36:29] -rw------- 1 boinc boinc    268821 Jan  9 18:35 log.47898826._030001.job.log.tgz.1
[2026-01-09 18:36:29] -rw------- 1 boinc boinc      7748 Jan  9 18:35 heartbeat.json
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc        27 Jan  9 18:36 wrapper_checkpoint.txt
[2026-01-09 18:36:29] -rw------- 1 boinc boinc        95 Jan  9 18:36 pilot_heartbeat.json
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc      8192 Jan  9 18:36 boinc_mmap_file
[2026-01-09 18:36:29] -rw------- 1 boinc boinc      5010 Jan  9 18:36 pilotlog.txt
[2026-01-09 18:36:29] -rw------- 1 boinc boinc    965736 Jan  9 18:36 log.47898826._030001.job.log.1
[2026-01-09 18:36:29] -rw------- 1 boinc boinc       357 Jan  9 18:36 output.list
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc       620 Jan  9 18:36 runtime_log
[2026-01-09 18:36:29] -rw------- 1 boinc boinc   1249280 Jan  9 18:36 result.tar.gz
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc      8902 Jan  9 18:36 runtime_log.err
[2026-01-09 18:36:29] -rw------- 1 boinc boinc       660 Jan  9 18:36 XlKKDmBZAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxGlKDmdtpdOo.diag
[2026-01-09 18:36:29] -rw-r--r-- 1 boinc boinc     11845 Jan  9 18:36 stderr.txt
[2026-01-09 18:36:29] HITS file was successfully produced:
[2026-01-09 18:36:29] -rw------- 1 boinc boinc 215269125 Jan  9 18:35 shared/HITS.pool.root.1
[2026-01-09 18:36:29]  *** Contents of shared directory: ***
[2026-01-09 18:36:29] total 430040
[2026-01-09 18:36:29] -rw-r--r-- 2 boinc boinc 223222004 Jan  9 16:44 ATLAS.root_0
[2026-01-09 18:36:29] -rw-r--r-- 2 boinc boinc    592393 Jan  9 16:44 input.tar.gz
[2026-01-09 18:36:29] -rw-r--r-- 2 boinc boinc     15847 Jan  9 16:44 start_atlas.sh
[2026-01-09 18:36:29] -rw------- 1 boinc boinc 215269125 Jan  9 18:35 HITS.pool.root.1
[2026-01-09 18:36:29] -rw------- 1 boinc boinc   1249280 Jan  9 18:36 result.tar.gz
18:36:31 (3488504): run_atlas exited; CPU time 19316.942742
18:36:31 (3488504): called boinc_finish(0)

</stderr_txt>
]]>

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