Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:42:43 (2287794): wrapper (7.7.26015): starting
14:42:43 (2287794): wrapper: running run_atlas (--nthreads 6)
[2026-01-09 14:42:43] Arguments: --nthreads 6
[2026-01-09 14:42:43] Threads: 6
[2026-01-09 14:42:43] Checking for CVMFS
[2026-01-09 14:43:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:43:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:43:52] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:43:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:43:53] 2.13.3.0 2288015 1 29448 154933 3 1 11896464 20971521 0 130560 0 0 0.000 1337 57 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-09 14:43:53] CVMFS is ok
[2026-01-09 14:43:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:43:53] Checking for apptainer binary...
[2026-01-09 14:43:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:43:53] Running /usr/bin/apptainer --version
[2026-01-09 14:43:53] apptainer version 1.4.4-1.el9
[2026-01-09 14:43:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:43:53] testio006
[2026-01-09 14:43:53] apptainer works
[2026-01-09 14:43:53] Set ATHENA_PROC_NUMBER=6
[2026-01-09 14:43:53] Set ATHENA_CORE_NUMBER=6
[2026-01-09 14:43:53] Starting ATLAS job with PandaID=6963153130
[2026-01-09 14:43:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 17:00:55]  *** The last 200 lines of the pilot log: ***
[2026-01-09 17:00:55] 2026-01-09 07:59:54,636 | INFO     | time since job start (8058s) is within the limit (349056.0s)
[2026-01-09 17:00:55] 2026-01-09 07:59:56,642 | INFO     | time since job start (8060s) is within the limit (349056.0s)
[2026-01-09 17:00:55] 2026-01-09 07:59:56,835 | INFO     | monitor loop #608: job 0:6963153130 is in state 'finished'
[2026-01-09 17:00:55] 2026-01-09 07:59:56,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 17:00:55] 2026-01-09 07:59:58,647 | INFO     | time since job start (8062s) is within the limit (349056.0s)
[2026-01-09 17:00:55] 2026-01-09 07:59:59,338 | INFO     | monitor loop #609: job 0:6963153130 is in state 'finished'
[2026-01-09 17:00:55] 2026-01-09 07:59:59,338 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 17:00:55] 2026-01-09 08:00:00,652 | INFO     | time since job start (8064s) is within the limit (349056.0s)
[2026-01-09 17:00:55] 2026-01-09 08:00:00,975 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 17:00:55] 2026-01-09 08:00:00,978 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 3965.26925
[2026-01-09 17:00:55] 2026-01-09 08:00:00,981 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6963153130/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 17:00:55] 2026-01-09 08:00:00,981 | INFO     | extracted standard info from prmon json
[2026-01-09 17:00:55] 2026-01-09 08:00:00,982 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 17:00:55] 2026-01-09 08:00:00,982 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 17:00:55] 2026-01-09 08:00:00,982 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 17:00:55] 2026-01-09 08:00:00,982 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 17:00:55] 2026-01-09 08:00:00,984 | INFO     | fitting pss+swap vs Time
[2026-01-09 17:00:55] 2026-01-09 08:00:00,984 | INFO     | sum of square deviations: 697065213.725191
[2026-01-09 17:00:55] 2026-01-09 08:00:00,985 | INFO     | sum of deviations: 15696839541.679394
[2026-01-09 17:00:55] 2026-01-09 08:00:00,985 | INFO     | mean x: 1767941525.0458016
[2026-01-09 17:00:55] 2026-01-09 08:00:00,985 | INFO     | mean y: 2439009.0534351147
[2026-01-09 17:00:55] 2026-01-09 08:00:00,985 | INFO     | intersect: -39808892687.46186
[2026-01-09 17:00:55] 2026-01-09 08:00:00,985 | INFO     | chi2: 2.236814481910058
[2026-01-09 17:00:55] 2026-01-09 08:00:00,986 | INFO     | sum of square deviations: 620256301.2142874
[2026-01-09 17:00:55] 2026-01-09 08:00:00,986 | INFO     | sum of deviations: 15226546363.42857
[2026-01-09 17:00:55] 2026-01-09 08:00:00,986 | INFO     | mean x: 1767941372.547619
[2026-01-09 17:00:55] 2026-01-09 08:00:00,986 | INFO     | mean y: 2438076.095238095
[2026-01-09 17:00:55] 2026-01-09 08:00:00,986 | INFO     | intersect: -43398396746.894516
[2026-01-09 17:00:55] 2026-01-09 08:00:00,987 | INFO     | chi2: 2.2414173297616435
[2026-01-09 17:00:55] 2026-01-09 08:00:00,987 | INFO     | current chi2=2.2414173297616435 (change=-0.2057769157348777 %)
[2026-01-09 17:00:55] 2026-01-09 08:00:00,987 | INFO     | right removable region: 125
[2026-01-09 17:00:55] 2026-01-09 08:00:00,987 | INFO     | sum of square deviations: 620252641.2142874
[2026-01-09 17:00:55] 2026-01-09 08:00:00,987 | INFO     | sum of deviations: -12594656310.761908
[2026-01-09 17:00:55] 2026-01-09 08:00:00,988 | INFO     | mean x: 1767941677.547619
[2026-01-09 17:00:55] 2026-01-09 08:00:00,988 | INFO     | mean y: 2494722.126984127
[2026-01-09 17:00:55] 2026-01-09 08:00:00,988 | INFO     | intersect: 35901765965.199936
[2026-01-09 17:00:55] 2026-01-09 08:00:00,988 | INFO     | chi2: 0.05899136645400442
[2026-01-09 17:00:55] 2026-01-09 08:00:00,988 | INFO     | current chi2=0.05899136645400442 (change=97.36270634283312 %)
[2026-01-09 17:00:55] 2026-01-09 08:00:00,988 | INFO     | sum of square deviations: 549300643.7024808
[2026-01-09 17:00:55] 2026-01-09 08:00:00,989 | INFO     | sum of deviations: -11565290594.421492
[2026-01-09 17:00:55] 2026-01-09 08:00:00,989 | INFO     | mean x: 1767941830.0495868
[2026-01-09 17:00:55] 2026-01-09 08:00:00,989 | INFO     | mean y: 2492436.5702479337
[2026-01-09 17:00:55] 2026-01-09 08:00:00,989 | INFO     | intersect: 37225753055.26969
[2026-01-09 17:00:55] 2026-01-09 08:00:00,989 | INFO     | chi2: 0.05146610933330997
[2026-01-09 17:00:55] 2026-01-09 08:00:00,989 | INFO     | current chi2=0.05146610933330997 (change=12.756539766818067 %)
[2026-01-09 17:00:55] 2026-01-09 08:00:00,989 | INFO     | left removable region: 20
[2026-01-09 17:00:55] 2026-01-09 08:00:00,990 | INFO     | sum of square deviations: 358932819.657143
[2026-01-09 17:00:55] 2026-01-09 08:00:00,990 | INFO     | sum of deviations: -5896241284.057142
[2026-01-09 17:00:55] 2026-01-09 08:00:00,990 | INFO     | mean x: 1767941952.057143
[2026-01-09 17:00:55] 2026-01-09 08:00:00,990 | INFO     | mean y: 2480362.6761904764
[2026-01-09 17:00:55] 2026-01-09 08:00:00,990 | INFO     | intersect: 29044718226.27761
[2026-01-09 17:00:55] 2026-01-09 08:00:00,990 | INFO     | chi2: 0.038535991667031914
[2026-01-09 17:00:55] 2026-01-09 08:00:00,991 | INFO     | current memory leak: -16.43 B/s (using 105 data points, chi2=0.04)
[2026-01-09 17:00:55] 2026-01-09 08:00:00,991 | INFO     | could have reported an average CPU frequency of 3996 MHz (8 samples)
[2026-01-09 17:00:55] 2026-01-09 08:00:00,991 | INFO     | ..............................
[2026-01-09 17:00:55] 2026-01-09 08:00:00,991 | INFO     | . Timing measurements:
[2026-01-09 17:00:55] 2026-01-09 08:00:00,991 | INFO     | . get job = 0 s
[2026-01-09 17:00:55] 2026-01-09 08:00:00,991 | INFO     | . initial setup = 5 s
[2026-01-09 17:00:55] 2026-01-09 08:00:00,991 | INFO     | . payload setup = 6 s
[2026-01-09 17:00:55] 2026-01-09 08:00:00,991 | INFO     | . stage-in = 0 s
[2026-01-09 17:00:55] 2026-01-09 08:00:00,991 | INFO     | . payload execution = 7957 s
[2026-01-09 17:00:55] 2026-01-09 08:00:00,991 | INFO     | . stage-out = 0 s
[2026-01-09 17:00:55] 2026-01-09 08:00:00,992 | INFO     | . log creation = 0 s
[2026-01-09 17:00:55] 2026-01-09 08:00:00,992 | INFO     | ..............................
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | 
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | job summary report
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | --------------------------------------------------
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | PanDA job id: 6963153130
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | task id: 47898826
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | errors: (none)
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | pilot state: finished 
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | transexitcode: 0
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | exeerrorcode: 0
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | exeerrordiag: 
[2026-01-09 17:00:55] 2026-01-09 08:00:01,066 | INFO     | exitcode: 0
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | exitmsg: OK
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | cpuconsumptiontime: 44830 s
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | nevents: 400
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | neventsw: 0
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | pid: 2309432
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | pgrp: 2309432
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | corecount: 6
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | event service: False
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | sizes: {0: 2283969, 3: 2284231, 11: 2284259, 7967: 2311966, 7968: 2321020, 8051: 2321158}
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | --------------------------------------------------
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | 
[2026-01-09 17:00:55] 2026-01-09 08:00:01,067 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-01-09 17:00:55] 2026-01-09 08:00:01,085 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,086 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,086 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,086 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,086 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,086 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,086 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,086 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,086 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,087 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,087 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,087 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,087 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,087 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,087 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 17:00:55] 2026-01-09 08:00:01,087 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,087 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 17:00:55] 2026-01-09 08:00:01,087 | INFO     | job 6963153130 has completed (purged errors)
[2026-01-09 17:00:55] 2026-01-09 08:00:01,087 | INFO     | overall cleanup function is called
[2026-01-09 17:00:55] 2026-01-09 08:00:02,094 | INFO     | --- collectZombieJob: --- 10, [2309432]
[2026-01-09 17:00:55] 2026-01-09 08:00:02,094 | INFO     | zombie collector waiting for pid 2309432
[2026-01-09 17:00:55] 2026-01-09 08:00:02,094 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 17:00:55] 2026-01-09 08:00:02,094 | INFO     | collected zombie processes
[2026-01-09 17:00:55] 2026-01-09 08:00:02,094 | INFO     | will attempt to kill all subprocesses of pid=2309432
[2026-01-09 17:00:55] 2026-01-09 08:00:02,188 | INFO     | process IDs to be killed: [2309432] (in reverse order)
[2026-01-09 17:00:55] 2026-01-09 08:00:02,228 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 17:00:55] 2026-01-09 08:00:02,228 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 17:00:55] 2026-01-09 08:00:02,231 | INFO     | did not find any defunct processes belonging to 2309432
[2026-01-09 17:00:55] 2026-01-09 08:00:02,233 | INFO     | did not find any defunct processes belonging to 2309432
[2026-01-09 17:00:55] 2026-01-09 08:00:02,233 | INFO     | ready for new job
[2026-01-09 17:00:55] 2026-01-09 08:00:02,233 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 17:00:55] 2026-01-09 08:00:02,235 | INFO     | ***************************************
[2026-01-09 17:00:55] 2026-01-09 08:00:02,235 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 17:00:55] 2026-01-09 08:00:02,235 | INFO     | ***************************************
[2026-01-09 17:00:55] 2026-01-09 08:00:02,235 | INFO     | 
[2026-01-09 17:00:55] 2026-01-09 08:00:02,236 | INFO     | architecture information:
[2026-01-09 17:00:55] 2026-01-09 08:00:02,236 | INFO     | executing command: cat /etc/os-release
[2026-01-09 17:00:55] 2026-01-09 08:00:02,248 | INFO     | cat /etc/os-release:
[2026-01-09 17:00:55] NAME="CentOS Linux"
[2026-01-09 17:00:55] VERSION="7 (Core)"
[2026-01-09 17:00:55] ID="centos"
[2026-01-09 17:00:55] ID_LIKE="rhel fedora"
[2026-01-09 17:00:55] VERSION_ID="7"
[2026-01-09 17:00:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 17:00:55] ANSI_COLOR="0;31"
[2026-01-09 17:00:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 17:00:55] HOME_URL="https://www.centos.org/"
[2026-01-09 17:00:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 17:00:55] 
[2026-01-09 17:00:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 17:00:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 17:00:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 17:00:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 17:00:55] 
[2026-01-09 17:00:55] 2026-01-09 08:00:02,248 | INFO     | ***************************************
[2026-01-09 17:00:55] 2026-01-09 08:00:02,751 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-01-09 17:00:55] 2026-01-09 08:00:02,765 | INFO     | sufficient remaining disk space (93243572224 B)
[2026-01-09 17:00:55] 2026-01-09 08:00:02,765 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 17:00:55] 2026-01-09 08:00:02,765 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 17:00:55] 2026-01-09 08:00:02,765 | INFO     | update_server=False
[2026-01-09 17:00:55] 2026-01-09 08:00:02,765 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 17:00:55] 2026-01-09 08:00:02,766 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:00:55] 2026-01-09 08:00:02,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:00:55] 2026-01-09 08:00:02,846 | INFO     | aborting loop
[2026-01-09 17:00:55] 2026-01-09 08:00:03,633 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 17:00:55] 2026-01-09 08:00:03,771 | INFO     | [job] retrieve thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:03,771 | INFO     | [job] queue monitor thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:03,821 | INFO     | all data control threads have been joined
[2026-01-09 17:00:55] 2026-01-09 08:00:03,851 | INFO     | [job] job monitor thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:03,922 | INFO     | all job control threads have been joined
[2026-01-09 17:00:55] 2026-01-09 08:00:04,155 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:04,199 | INFO     | all payload control threads have been joined
[2026-01-09 17:00:55] 2026-01-09 08:00:04,332 | INFO     | [data] copytool_in thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:04,465 | INFO     | [payload] validate_post thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:04,478 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:04,826 | INFO     | [data] control thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:04,881 | INFO     | [payload] failed_post thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:04,927 | INFO     | [job] control thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:04,959 | INFO     | [job] validate thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:04,985 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:05,145 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:05,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 17:00:55] 2026-01-09 08:00:05,204 | INFO     | [payload] control thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:05,639 | INFO     | [data] copytool_out thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:09,171 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 17:00:55] 2026-01-09 08:00:31,124 [wrapper] supervise_pilot (15 min periods counter: 10)
[2026-01-09 17:00:55] 2026-01-09 08:00:33,816 | INFO     | PID=2295941 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 17:00:55] 2026-01-09 08:00:33,816 | INFO     | .. there are 2 such processes running
[2026-01-09 17:00:55] 2026-01-09 08:00:33,816 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 17:00:55] 2026-01-09 08:00:33,816 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 17:00:55] 2026-01-09 08:00:33,816 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 17:00:55] 2026-01-09 08:00:49,271 | INFO     | [monitor] cgroup control has ended
[2026-01-09 17:00:55] 2026-01-09 08:00:50,134 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965863671616)>', '<ExcThread(monitor, started 139965484734208)>']
[2026-01-09 17:00:55] 2026-01-09 08:00:50,900 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 17:00:55] 2026-01-09 08:00:50,901 | INFO     | [monitor] control thread has ended
[2026-01-09 17:00:55] 2026-01-09 08:00:55,159 | INFO     | all workflow threads have been joined
[2026-01-09 17:00:55] 2026-01-09 08:00:55,159 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 17:00:55] 2026-01-09 08:00:55,159 | INFO     | traces error code: 0
[2026-01-09 17:00:55] 2026-01-09 08:00:55,159 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 17:00:55] 2026-01-09 08:00:55,252 [wrapper] ==== pilot stdout END ====
[2026-01-09 17:00:55] 2026-01-09 08:00:55,254 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 17:00:55] 2026-01-09 08:00:55,256 [wrapper] pilotpid: 2295941
[2026-01-09 17:00:55] 2026-01-09 08:00:55,258 [wrapper] Pilot exit status: 0
[2026-01-09 17:00:55] 2026-01-09 08:00:55,267 [wrapper] pandaids: 6963153130
[2026-01-09 17:00:55] 2026-01-09 08:00:55,289 [wrapper] cleanup supervisor_pilot 2344251 2295943
[2026-01-09 17:00:55] 2026-01-09 08:00:55,291 [wrapper] Test setup, not cleaning
[2026-01-09 17:00:55] 2026-01-09 08:00:55,293 [wrapper] apfmon messages muted
[2026-01-09 17:00:55] 2026-01-09 08:00:55,295 [wrapper] ==== wrapper stdout END ====
[2026-01-09 17:00:55] 2026-01-09 08:00:55,297 [wrapper] ==== wrapper stderr END ====
[2026-01-09 17:00:55]  *** Error codes and diagnostics ***
[2026-01-09 17:00:55]     "exeErrorCode": 0,
[2026-01-09 17:00:55]     "exeErrorDiag": "",
[2026-01-09 17:00:55]     "pilotErrorCode": 0,
[2026-01-09 17:00:55]     "pilotErrorDiag": "",
[2026-01-09 17:00:55]  *** Listing of results directory ***
[2026-01-09 17:00:55] total 441952
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc    579449 Jan  9 04:06 pilot3.tar.gz
[2026-01-09 17:00:55] -rwx------. 1 boinc boinc     36322 Jan  9 04:09 runpilot2-wrapper.sh
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc      5112 Jan  9 04:11 queuedata.json
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc       100 Jan  9 14:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 17:00:55] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 14:42 run_atlas
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc       105 Jan  9 14:42 job.xml
[2026-01-09 17:00:55] -rw-r--r--. 2 boinc boinc 224668471 Jan  9 14:42 EVNT.47898824._001154.pool.root.1
[2026-01-09 17:00:55] -rw-r--r--. 2 boinc boinc     15847 Jan  9 14:42 start_atlas.sh
[2026-01-09 17:00:55] drwxrwx--x. 2 boinc boinc        68 Jan  9 14:42 shared
[2026-01-09 17:00:55] -rw-r--r--. 2 boinc boinc    592396 Jan  9 14:42 input.tar.gz
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc         0 Jan  9 14:42 boinc_lockfile
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc      2519 Jan  9 14:43 pandaJob.out
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc    989771 Jan  9 14:45 agis_schedconf.cvmfs.json
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc   1516240 Jan  9 14:45 agis_ddmendpoints.agis.ALL.json
[2026-01-09 17:00:55] drwx------. 5 boinc boinc      4096 Jan  9 14:45 pilot3
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc      9362 Jan  9 15:08 init_data.xml
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc 221018260 Jan  9 16:58 HITS.47898826._029825.pool.root.1
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc       530 Jan  9 16:58 boinc_task_state.xml
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc      1027 Jan  9 16:58 memory_monitor_summary.json
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc    328899 Jan  9 16:58 log.47898826._029825.job.log.tgz.1
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc        95 Jan  9 16:59 pilot_heartbeat.json
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc      7760 Jan  9 17:00 heartbeat.json
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc      8192 Jan  9 17:00 boinc_mmap_file
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc        27 Jan  9 17:00 wrapper_checkpoint.txt
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc      4823 Jan  9 17:00 pilotlog.txt
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc   1152166 Jan  9 17:00 log.47898826._029825.job.log.1
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc       357 Jan  9 17:00 output.list
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc       620 Jan  9 17:00 runtime_log
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc   1505280 Jan  9 17:00 result.tar.gz
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc      8775 Jan  9 17:00 runtime_log.err
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc       644 Jan  9 17:00 9OxKDm0YAy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm11fKDmi9MzVo.diag
[2026-01-09 17:00:55] -rw-r--r--. 1 boinc boinc     20997 Jan  9 17:00 stderr.txt
[2026-01-09 17:00:55] HITS file was successfully produced:
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc 221018260 Jan  9 16:58 shared/HITS.pool.root.1
[2026-01-09 17:00:55]  *** Contents of shared directory: ***
[2026-01-09 17:00:55] total 437312
[2026-01-09 17:00:55] -rw-r--r--. 2 boinc boinc 224668471 Jan  9 14:42 ATLAS.root_0
[2026-01-09 17:00:55] -rw-r--r--. 2 boinc boinc     15847 Jan  9 14:42 start_atlas.sh
[2026-01-09 17:00:55] -rw-r--r--. 2 boinc boinc    592396 Jan  9 14:42 input.tar.gz
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc 221018260 Jan  9 16:58 HITS.pool.root.1
[2026-01-09 17:00:55] -rw-------. 1 boinc boinc   1505280 Jan  9 17:00 result.tar.gz
17:00:57 (2287794): run_atlas exited; CPU time 44904.072258
17:00:57 (2287794): called boinc_finish(0)

</stderr_txt>
]]>

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