Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-09 00:21:28 (58612): vboxwrapper version 26210
2026-01-09 00:21:28 (58612): BOINC client version: 8.0.2
2026-01-09 00:21:29 (58612): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2026-01-09 00:21:29 (58612): Successfully copied 'init_data.xml' to the shared directory.
2026-01-09 00:21:29 (58612): Create VM. (boinc_e4547e977b472fe8, slot#4)
2026-01-09 00:21:30 (58612): Setting Memory Size for VM. (4800MB)
2026-01-09 00:21:30 (58612): Setting CPU Count for VM. (8)
2026-01-09 00:21:30 (58612): Setting Chipset Options for VM.
2026-01-09 00:21:31 (58612): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-09 00:21:31 (58612): Setting Boot Options for VM.
2026-01-09 00:21:31 (58612): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-09 00:21:32 (58612): Enabling VM Network Access.
2026-01-09 00:21:32 (58612): Disabling USB Support for VM.
2026-01-09 00:21:32 (58612): Disabling COM Port Support for VM.
2026-01-09 00:21:32 (58612): Disabling LPT Port Support for VM.
2026-01-09 00:21:33 (58612): Disabling Audio Support for VM.
2026-01-09 00:21:33 (58612): Disabling Clipboard Support for VM.
2026-01-09 00:21:33 (58612): Disabling Drag and Drop Support for VM.
2026-01-09 00:21:33 (58612): Adding storage controller(s) to VM.
2026-01-09 00:21:34 (58612): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-09 00:21:34 (58612): Adding VirtualBox Guest Additions to VM.
2026-01-09 00:21:34 (58612): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-09 00:21:35 (58612): forwarding host port 58274 to guest port 80
2026-01-09 00:21:35 (58612): Enabling remote desktop for VM.
2026-01-09 00:21:35 (58612): Required extension pack not installed, remote desktop not enabled.
2026-01-09 00:21:35 (58612): Enabling shared directory for VM.
2026-01-09 00:21:36 (58612): Starting VM using VBoxManage interface. (boinc_e4547e977b472fe8, slot#4)
2026-01-09 00:21:41 (58612): Successfully started VM. (PID = '2328')
2026-01-09 00:21:41 (58612): Reporting VM Process ID to BOINC.
2026-01-09 00:21:41 (58612): Guest Log: BIOS: VirtualBox 7.0.6
2026-01-09 00:21:41 (58612): Guest Log: CPUID EDX: 0x178bfbff
2026-01-09 00:21:41 (58612): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-09 00:21:41 (58612): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-09 00:21:41 (58612): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-09 00:21:41 (58612): Detected: Web Application Enabled (http://localhost:58274)
2026-01-09 00:21:41 (58612): Preference change detected
2026-01-09 00:21:41 (58612): Setting CPU throttle for VM. (50%)
2026-01-09 00:21:41 (58612): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-09 00:21:43 (58612): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-09 00:21:43 (58612): Guest Log: BIOS: Booting from Hard Disk...
2026-01-09 00:21:47 (58612): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-09 00:21:47 (58612): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-09 00:21:47 (58612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-09 00:21:52 (58612): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-09 00:21:52 (58612): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-01-09 00:21:57 (58612): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-09 00:21:57 (58612): Guest Log: 00:00:00.000119 main     Log opened 2026-01-09T00:21:53.833378000Z
2026-01-09 00:21:57 (58612): Guest Log: 00:00:00.000220 main     OS Product: Linux
2026-01-09 00:21:57 (58612): Guest Log: 00:00:00.000247 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-09 00:21:57 (58612): Guest Log: 00:00:00.000270 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-09 00:21:57 (58612): Guest Log: 00:00:00.000291 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-09 00:21:57 (58612): Guest Log: 00:00:00.000292 main     Process ID: 1363
2026-01-09 00:21:57 (58612): Guest Log: 00:00:00.000292 main     Package type: LINUX_64BITS_GENERIC
2026-01-09 00:21:57 (58612): Guest Log: 00:00:00.001199 main     5.2.32 r132073 started. Verbose level = 0
2026-01-09 00:21:57 (58612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-09 00:21:57 (58612): Guest Log: [INFO] Mounting shared directory
2026-01-09 00:21:57 (58612): Guest Log: [INFO] Checking for init_data.xml
2026-01-09 00:21:59 (58612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-09 00:21:59 (58612): Guest Log: [INFO] Detected branch: prod
2026-01-09 00:21:59 (58612): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-09 00:21:59 (58612): Guest Log: Copying input files
2026-01-09 00:22:01 (58612): Guest Log: Copied input files into RunAtlas.
2026-01-09 00:22:01 (58612): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-09 00:22:01 (58612): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-09 00:22:01 (58612): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-09 00:22:01 (58612): Guest Log: Further information can be found at the LHC@home message board.
2026-01-09 00:22:07 (58612): Guest Log: 00:00:10.003408 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 012 324 616 000ns (GuestNow=1 767 936 126 160 130 000 ns GuestLast=1 767 918 113 835 514 000 ns fSetTimeLastLoop=true )
2026-01-09 00:22:12 (58612): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-09 00:22:12 (58612): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-09 00:22:12 (58612): Guest Log: 2.6.3.0 1642 0 32184 154933 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-01-09 00:22:12 (58612): Guest Log: copied the webapp to /var/www
2026-01-09 00:22:12 (58612): Guest Log: ATHENA_PROC_NUMBER=8
2026-01-09 00:22:12 (58612): Guest Log: ATHENA_CORE_NUMBER=8
2026-01-09 00:22:13 (58612): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-09 00:22:13 (58612): Guest Log:  *** Starting ATLAS job. (PandaID=6963153850 taskID=47898826) ***
2026-01-09 00:27:03 (58612): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 00:27:24 (58612): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 00:29:33 (58612): VM state change detected. (old = 'running', new = 'paused')
2026-01-09 00:29:54 (58612): VM state change detected. (old = 'paused', new = 'running')
2026-01-09 00:32:28 (58612): Guest Log:  *** Job finished ***
2026-01-09 00:32:28 (58612): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:25,861 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:25,861 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:39,010 | INFO     | [monitor] cgroup control has ended
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:40,340 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139901264828224)>', '<ExcThread(monitor, started 139900800182016)>']
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:41,056 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:41,056 | INFO     | [monitor] control thread has ended
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,348 | INFO     | all workflow threads have been joined
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,348 | INFO     | end of generic workflow (traces error code: 0)
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,348 | INFO     | traces error code: 0
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,392 [wrapper] ==== pilot stdout END ====
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,394 [wrapper] ==== wrapper stdout RESUME ====
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,397 [wrapper] pilotpid: 6073
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,400 [wrapper] Pilot exit status: 0
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,516 [wrapper] pandaids: 6963153850
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,534 [wrapper] cleanup supervisor_pilot  6079 6074
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,537 [wrapper] Test setup, not cleaning
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,540 [wrapper] apfmon messages muted
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,542 [wrapper] ==== wrapper stdout END ====
2026-01-09 00:32:28 (58612): Guest Log: 2026-01-09 05:31:45,544 [wrapper] ==== wrapper stderr END ====
2026-01-09 00:32:28 (58612): Guest Log:  *** Error codes and diagnostics ***
2026-01-09 00:32:28 (58612): Guest Log:     "exeErrorCode": 65,
2026-01-09 00:32:28 (58612): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (98); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 5525.6 KB/s",
2026-01-09 00:32:28 (58612): Guest Log:     "pilotErrorCode": 1305,
2026-01-09 00:32:28 (58612): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (98); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible me",
2026-01-09 00:32:28 (58612): Guest Log:  *** Listing of results directory ***
2026-01-09 00:32:28 (58612): Guest Log: total 4480
2026-01-09 00:32:28 (58612): Guest Log: -rw-r--r--. 1 atlas atlas  579449 Jan  8 19:06 pilot3.tar.gz
2026-01-09 00:32:28 (58612): Guest Log: -rwx------. 1 atlas atlas   36322 Jan  8 19:06 runpilot2-wrapper.sh
2026-01-09 00:32:28 (58612): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Jan  8 19:06 queuedata.json
2026-01-09 00:32:28 (58612): Guest Log: -rwxr-xr-x. 1 atlas atlas    9004 Jan  9 05:21 init_data.xml
2026-01-09 00:32:28 (58612): Guest Log: -rwxr-xr-x. 1 atlas atlas  592392 Jan  9 05:21 input.tar.gz
2026-01-09 00:32:28 (58612): Guest Log: -rwxr-xr-x. 1 atlas atlas   15847 Jan  9 05:21 start_atlas.sh
2026-01-09 00:32:28 (58612): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jan  9 05:22 EVNT.47898824._001171.pool.root.1 -> /data/./ATLAS.root_0
2026-01-09 00:32:28 (58612): Guest Log: -rw-r--r--. 1 atlas atlas    2519 Jan  9 05:22 pandaJob.out
2026-01-09 00:32:28 (58612): Guest Log: -rw-------. 1 atlas atlas  989771 Jan  9 05:22 agis_schedconf.cvmfs.json
2026-01-09 00:32:28 (58612): Guest Log: -rw-------. 1 atlas atlas 1516240 Jan  9 05:22 agis_ddmendpoints.agis.ALL.json
2026-01-09 00:32:28 (58612): Guest Log: drwx------. 5 atlas atlas    4096 Jan  9 05:22 pilot3
2026-01-09 00:32:28 (58612): Guest Log: -rw-------. 1 atlas atlas    1017 Jan  9 05:28 memory_monitor_summary.json
2026-01-09 00:32:28 (58612): Guest Log: -rw-------. 1 atlas atlas  249318 Jan  9 05:28 log.47898826._030266.job.log.tgz.1
2026-01-09 00:32:28 (58612): Guest Log: -rw-------. 1 atlas atlas      95 Jan  9 05:30 pilot_heartbeat.json
2026-01-09 00:32:28 (58612): Guest Log: -rw-------. 1 atlas atlas    9917 Jan  9 05:30 heartbeat.json
2026-01-09 00:32:28 (58612): Guest Log: -rw-------. 1 atlas atlas    4991 Jan  9 05:31 pilotlog.txt
2026-01-09 00:32:28 (58612): Guest Log: -rw-------. 1 atlas atlas  122988 Jan  9 05:31 log.47898826._030266.job.log.1
2026-01-09 00:32:28 (58612): Guest Log: -rw-------. 1 atlas atlas     188 Jan  9 05:31 output.list
2026-01-09 00:32:28 (58612): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jan  9 05:31 runtime_log
2026-01-09 00:32:28 (58612): Guest Log: -rw-------. 1 atlas atlas  389120 Jan  9 05:31 result.tar.gz
2026-01-09 00:32:28 (58612): Guest Log: -rw-------. 1 atlas atlas     643 Jan  9 05:31 zKWKDm8VAy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmu9kKDmgF4jFm.diag
2026-01-09 00:32:28 (58612): Guest Log: -rw-r--r--. 1 atlas atlas    8587 Jan  9 05:31 runtime_log.err
2026-01-09 00:32:28 (58612): Guest Log: Looking for outputfile HITS.47898826._030266.pool.root.1
2026-01-09 00:32:28 (58612): Guest Log: No HITS file was produced
2026-01-09 00:32:28 (58612): Guest Log: Successfully finished the ATLAS job!
2026-01-09 00:32:28 (58612): Guest Log: Copying the results back to the shared directory!
2026-01-09 00:32:28 (58612): Guest Log:  *** Contents of shared directory: ***
2026-01-09 00:32:28 (58612): Guest Log: total 219188
2026-01-09 00:32:28 (58612): Guest Log: -rwxrwxrwx. 1 root root 223434910 Jan  9 05:21 ATLAS.root_0
2026-01-09 00:32:28 (58612): Guest Log: -rwxrwxrwx. 1 root root      9004 Jan  9 05:21 init_data.xml
2026-01-09 00:32:28 (58612): Guest Log: -rwxrwxrwx. 1 root root    592392 Jan  8 23:59 input.tar.gz
2026-01-09 00:32:28 (58612): Guest Log: -rwxrwxrwx. 1 root root    389120 Jan  9  2026 result.tar.gz
2026-01-09 00:32:28 (58612): Guest Log: -rwxrwxrwx. 1 root root     15847 Jan  8 23:59 start_atlas.sh
2026-01-09 00:32:28 (58612): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-09 00:32:29 (58612): VM Completion File Detected.
2026-01-09 00:32:29 (58612): Powering off VM.
2026-01-09 00:32:29 (58612): Successfully stopped VM.
2026-01-09 00:32:29 (58612): Deregistering VM. (boinc_e4547e977b472fe8, slot#4)
2026-01-09 00:32:29 (58612): Removing network bandwidth throttle group from VM.
2026-01-09 00:32:30 (58612): Removing VM from VirtualBox.
2026-01-09 00:32:35 (58612): called boinc_finish(0)

</stderr_txt>
]]>

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