Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:04:29 (2822239): wrapper (7.7.26015): starting
19:04:29 (2822239): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 19:04:29] Arguments: --nthreads 12
[2026-01-08 19:04:29] Threads: 12
[2026-01-08 19:04:29] Checking for CVMFS
[2026-01-08 19:04:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 19:04:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 19:04:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 19:04:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 19:04:33] 2.8.1.0 2822513 0 30244 154924 3 1 4007256 4096001 0 130560 0 0 100.000 1 0 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-08 19:04:33] CVMFS is ok
[2026-01-08 19:04:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 19:04:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 19:04:33] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-08 19:04:33] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-08 19:04:33] Further information can be found at the LHC@home message board.
[2026-01-08 19:04:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 19:04:33] Checking for apptainer binary...
[2026-01-08 19:04:33] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2026-01-08 19:04:33] apptainer is not installed, using version from CVMFS
[2026-01-08 19:04:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 19:04:34] farmville.blisteringsheep.pec
[2026-01-08 19:04:34] apptainer works
[2026-01-08 19:04:34] Set ATHENA_PROC_NUMBER=12
[2026-01-08 19:04:34] Set ATHENA_CORE_NUMBER=12
[2026-01-08 19:04:34] Starting ATLAS job with PandaID=6963146311
[2026-01-08 19:04:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/28 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 20:11:17]  *** The last 200 lines of the pilot log: ***
[2026-01-08 20:11:17] ]
[2026-01-08 20:11:17] 2026-01-09 01:10:39,732 | INFO     | transferring file log.47898826._026691.job.log.tgz.1 from /var/lib/boinc/slots/28/PanDA_Pilot-6963146311/log.47898826._026691.job.log.tgz.1 to /var/lib/boinc/slots
[2026-01-08 20:11:17] 2026-01-09 01:10:39,732 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/28/PanDA_Pilot-6963146311/log.47898826._026691.job.log.tgz.1 /var/lib/boinc/slots/28/log.47898826._026691.j
[2026-01-08 20:11:17] 2026-01-09 01:10:39,742 | INFO     | adding to output.list: log.47898826._026691.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/57/log.47898826._026691.job.log.tg
[2026-01-08 20:11:17] 2026-01-09 01:10:39,743 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-08 20:11:17] 2026-01-09 01:10:39,743 | INFO     | summary of transferred files:
[2026-01-08 20:11:17] 2026-01-09 01:10:39,743 | INFO     |  -- lfn=log.47898826._026691.job.log.tgz.1, status_code=0, status=transferred
[2026-01-08 20:11:17] 2026-01-09 01:10:39,743 | INFO     | stage-out finished correctly
[2026-01-08 20:11:17] 2026-01-09 01:10:41,704 | INFO     | time since job start (3954s) is within the limit (349056.0s)
[2026-01-08 20:11:17] 2026-01-09 01:10:42,487 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-08 20:11:17] 2026-01-09 01:10:42,532 | INFO     | job 6963146311 has state=finished
[2026-01-08 20:11:17] 2026-01-09 01:10:42,532 | INFO     | preparing for final server update for job 6963146311 in state='finished'
[2026-01-08 20:11:17] 2026-01-09 01:10:42,532 | INFO     | this job has now completed (state=finished)
[2026-01-08 20:11:17] 2026-01-09 01:10:42,533 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-08 20:11:17] 2026-01-09 01:10:42,533 | INFO     | log transfer has been attempted: DONE
[2026-01-08 20:11:17] 2026-01-09 01:10:42,533 | INFO     | job 6963146311 has finished - writing final server update
[2026-01-08 20:11:17] 2026-01-09 01:10:42,533 | INFO     | total number of processed events: 400 (read)
[2026-01-08 20:11:17] 2026-01-09 01:10:42,533 | INFO     | executing command: lscpu
[2026-01-08 20:11:17] 2026-01-09 01:10:42,554 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-08 20:11:17] 2026-01-09 01:10:43,709 | INFO     | time since job start (3956s) is within the limit (349056.0s)
[2026-01-08 20:11:17] 2026-01-09 01:10:44,880 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-08 20:11:17] 2026-01-09 01:10:44,884 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2664.223791666666
[2026-01-08 20:11:17] 2026-01-09 01:10:44,892 | INFO     | using path: /var/lib/boinc/slots/28/PanDA_Pilot-6963146311/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 20:11:17] 2026-01-09 01:10:44,893 | INFO     | extracted standard info from prmon json
[2026-01-08 20:11:17] 2026-01-09 01:10:44,894 | INFO     | extracted standard memory fields from prmon json
[2026-01-08 20:11:17] 2026-01-09 01:10:44,894 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 20:11:17] 2026-01-09 01:10:44,894 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 20:11:17] 2026-01-09 01:10:44,894 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 20:11:17] 2026-01-09 01:10:44,896 | INFO     | fitting pss+swap vs Time
[2026-01-08 20:11:17] 2026-01-09 01:10:44,896 | INFO     | sum of square deviations: 60482994.5
[2026-01-08 20:11:17] 2026-01-09 01:10:44,896 | INFO     | sum of deviations: -4905126479.5
[2026-01-08 20:11:17] 2026-01-09 01:10:44,897 | INFO     | mean x: 1767919150.5
[2026-01-08 20:11:17] 2026-01-09 01:10:44,897 | INFO     | mean y: 2818377.327586207
[2026-01-08 20:11:17] 2026-01-09 01:10:44,897 | INFO     | intersect: 143379764416.80807
[2026-01-08 20:11:17] 2026-01-09 01:10:44,897 | INFO     | chi2: 0.047972016419061084
[2026-01-08 20:11:17] 2026-01-09 01:10:44,897 | INFO     | current memory leak: -81.10 B/s (using 58 data points, chi2=0.05)
[2026-01-08 20:11:17] 2026-01-09 01:10:44,898 | INFO     | could have reported an average CPU frequency of 2862 MHz (6 samples)
[2026-01-08 20:11:17] 2026-01-09 01:10:44,898 | INFO     | ..............................
[2026-01-08 20:11:17] 2026-01-09 01:10:44,898 | INFO     | . Timing measurements:
[2026-01-08 20:11:17] 2026-01-09 01:10:44,898 | INFO     | . get job = 0 s
[2026-01-08 20:11:17] 2026-01-09 01:10:44,899 | INFO     | . initial setup = 2 s
[2026-01-08 20:11:17] 2026-01-09 01:10:44,899 | INFO     | . payload setup = 3 s
[2026-01-08 20:11:17] 2026-01-09 01:10:44,899 | INFO     | . stage-in = 0 s
[2026-01-08 20:11:17] 2026-01-09 01:10:44,899 | INFO     | . payload execution = 3931 s
[2026-01-08 20:11:17] 2026-01-09 01:10:44,899 | INFO     | . stage-out = 0 s
[2026-01-08 20:11:17] 2026-01-09 01:10:44,899 | INFO     | . log creation = 0 s
[2026-01-08 20:11:17] 2026-01-09 01:10:44,899 | INFO     | ..............................
[2026-01-08 20:11:17] 2026-01-09 01:10:45,135 | WARNING  | process 2834244 can no longer be monitored (due to stat problems) - aborting
[2026-01-08 20:11:17] 2026-01-09 01:10:45,136 | INFO     | using path: /var/lib/boinc/slots/28/PanDA_Pilot-6963146311/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 20:11:17] 2026-01-09 01:10:45,136 | INFO     | using path: /var/lib/boinc/slots/28/PanDA_Pilot-6963146311/memory_monitor_summary.json (trf name=prmon)
[2026-01-08 20:11:17] 2026-01-09 01:10:45,136 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-08 20:11:17] 2026-01-09 01:10:45,136 | WARNING  | maxPSS not found in memory monitor output
[2026-01-08 20:11:17] 2026-01-09 01:10:45,137 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4517394 B
[2026-01-08 20:11:17] 2026-01-09 01:10:45,137 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15602 B
[2026-01-08 20:11:17] 2026-01-09 01:10:45,137 | INFO     | executing command: df -mP /var/lib/boinc/slots/28
[2026-01-08 20:11:17] 2026-01-09 01:10:45,145 | INFO     | sufficient remaining disk space (384419495936 B)
[2026-01-08 20:11:17] 2026-01-09 01:10:45,146 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-08 20:11:17] 2026-01-09 01:10:45,146 | INFO     | size of work directory /var/lib/boinc/slots/28/PanDA_Pilot-6963146311: 4810644 B (within 4404019200 B limit)
[2026-01-08 20:11:17] 2026-01-09 01:10:45,146 | INFO     | pfn file=/var/lib/boinc/slots/28/PanDA_Pilot-6963146311/HITS.47898826._026691.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-08 20:11:17] 2026-01-09 01:10:45,146 | INFO     | total size of present files: 0 B (workdir size: 4810644 B)
[2026-01-08 20:11:17] 2026-01-09 01:10:45,146 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/28/PanDA_Pilot-6963146311/HITS.47898826._026691.pool.root.1 since it does not exist
[2026-01-08 20:11:17] 2026-01-09 01:10:45,283 | INFO     | number of running child processes to parent process 2834244: 1
[2026-01-08 20:11:17] 2026-01-09 01:10:45,283 | INFO     | maximum number of monitored processes: 6
[2026-01-08 20:11:17] 2026-01-09 01:10:45,283 | INFO     | aborting job monitoring since job object (job id=6963146311) has expired
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | 
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | job summary report
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | --------------------------------------------------
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | PanDA job id: 6963146311
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | task id: 47898826
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | errors: (none)
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | pilot state: finished 
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | transexitcode: 0
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | exeerrorcode: 0
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | exeerrordiag: 
[2026-01-08 20:11:17] 2026-01-09 01:10:45,428 | INFO     | exitcode: 0
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | exitmsg: OK
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | cpuconsumptiontime: 43721 s
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | nevents: 400
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | neventsw: 0
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | pid: 2834244
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | pgrp: 2834244
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | corecount: 12
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | event service: False
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | sizes: {0: 2283969, 3: 2284231, 11: 2284259, 3938: 2310150, 3940: 2319150, 3942: 2319206, 3945: 2319528}
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | --------------------------------------------------
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | 
[2026-01-08 20:11:17] 2026-01-09 01:10:45,429 | INFO     | executing command: ls -lF /var/lib/boinc/slots/28
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,444 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,445 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 20:11:17] 2026-01-09 01:10:45,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,445 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 20:11:17] 2026-01-09 01:10:45,445 | INFO     | job 6963146311 has completed (purged errors)
[2026-01-08 20:11:17] 2026-01-09 01:10:45,445 | INFO     | overall cleanup function is called
[2026-01-08 20:11:17] 2026-01-09 01:10:46,452 | INFO     | --- collectZombieJob: --- 10, [2834244]
[2026-01-08 20:11:17] 2026-01-09 01:10:46,452 | INFO     | zombie collector waiting for pid 2834244
[2026-01-08 20:11:17] 2026-01-09 01:10:46,452 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 20:11:17] 2026-01-09 01:10:46,452 | INFO     | collected zombie processes
[2026-01-08 20:11:17] 2026-01-09 01:10:46,452 | INFO     | will attempt to kill all subprocesses of pid=2834244
[2026-01-08 20:11:17] 2026-01-09 01:10:46,597 | INFO     | process IDs to be killed: [2834244] (in reverse order)
[2026-01-08 20:11:17] 2026-01-09 01:10:46,637 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 20:11:17] 2026-01-09 01:10:46,638 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 20:11:17] 2026-01-09 01:10:46,643 | INFO     | did not find any defunct processes belonging to 2834244
[2026-01-08 20:11:17] 2026-01-09 01:10:46,648 | INFO     | did not find any defunct processes belonging to 2834244
[2026-01-08 20:11:17] 2026-01-09 01:10:46,649 | INFO     | ready for new job
[2026-01-08 20:11:17] 2026-01-09 01:10:46,649 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 20:11:17] 2026-01-09 01:10:46,650 | INFO     | ***************************************
[2026-01-08 20:11:17] 2026-01-09 01:10:46,650 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 20:11:17] 2026-01-09 01:10:46,650 | INFO     | ***************************************
[2026-01-08 20:11:17] 2026-01-09 01:10:46,650 | INFO     | 
[2026-01-08 20:11:17] 2026-01-09 01:10:46,652 | INFO     | architecture information:
[2026-01-08 20:11:17] 2026-01-09 01:10:46,653 | INFO     | executing command: cat /etc/os-release
[2026-01-08 20:11:17] 2026-01-09 01:10:46,662 | INFO     | cat /etc/os-release:
[2026-01-08 20:11:17] NAME="CentOS Linux"
[2026-01-08 20:11:17] VERSION="7 (Core)"
[2026-01-08 20:11:17] ID="centos"
[2026-01-08 20:11:17] ID_LIKE="rhel fedora"
[2026-01-08 20:11:17] VERSION_ID="7"
[2026-01-08 20:11:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 20:11:17] ANSI_COLOR="0;31"
[2026-01-08 20:11:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 20:11:17] HOME_URL="https://www.centos.org/"
[2026-01-08 20:11:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 20:11:17] 
[2026-01-08 20:11:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 20:11:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 20:11:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 20:11:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 20:11:17] 
[2026-01-08 20:11:17] 2026-01-09 01:10:46,662 | INFO     | ***************************************
[2026-01-08 20:11:17] 2026-01-09 01:10:47,165 | INFO     | executing command: df -mP /var/lib/boinc/slots/28
[2026-01-08 20:11:17] 2026-01-09 01:10:47,175 | INFO     | sufficient remaining disk space (384419495936 B)
[2026-01-08 20:11:17] 2026-01-09 01:10:47,175 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 20:11:17] 2026-01-09 01:10:47,175 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 20:11:17] 2026-01-09 01:10:47,175 | INFO     | update_server=False
[2026-01-08 20:11:17] 2026-01-09 01:10:47,175 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 20:11:17] 2026-01-09 01:10:47,176 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 20:11:17] 2026-01-09 01:10:47,176 | INFO     | aborting loop
[2026-01-08 20:11:17] 2026-01-09 01:10:47,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 20:11:17] 2026-01-09 01:10:47,857 | INFO     | all data control threads have been joined
[2026-01-08 20:11:17] 2026-01-09 01:10:48,176 | INFO     | [job] retrieve thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:48,181 | INFO     | [job] job monitor thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:48,224 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:48,239 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:48,306 | INFO     | all payload control threads have been joined
[2026-01-08 20:11:17] 2026-01-09 01:10:48,309 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:48,350 | INFO     | [payload] failed_post thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:48,462 | INFO     | all job control threads have been joined
[2026-01-08 20:11:17] 2026-01-09 01:10:48,537 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 20:11:17] 2026-01-09 01:10:48,857 | INFO     | [data] control thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:48,974 | INFO     | [payload] validate_post thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:49,210 | INFO     | [data] copytool_in thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:49,309 | INFO     | [payload] control thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:49,467 | INFO     | [job] control thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:49,626 | INFO     | [job] validate thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:49,803 | INFO     | [data] copytool_out thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:49,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 20:11:17] 2026-01-09 01:10:50,977 | INFO     | [job] queue monitor thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:52,543 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:10:52,788 | INFO     | [monitor] cgroup control has ended
[2026-01-08 20:11:17] 2026-01-09 01:10:58,145 | INFO     | job.realtimelogging is not enabled
[2026-01-08 20:11:17] 2026-01-09 01:10:59,150 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 20:11:17] 2026-01-09 01:11:00,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140284754552640)>', '<ExcThread(monitor, started 140284218300160)>']
[2026-01-08 20:11:17] 2026-01-09 01:11:05,034 | INFO     | all workflow threads have been joined
[2026-01-08 20:11:17] 2026-01-09 01:11:05,034 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 20:11:17] 2026-01-09 01:11:05,034 | INFO     | traces error code: 0
[2026-01-08 20:11:17] 2026-01-09 01:11:05,034 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 20:11:17] 2026-01-09 01:11:16,976 | INFO     | PID=2826977 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-08 20:11:17] 2026-01-09 01:11:16,976 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 20:11:17] 2026-01-09 01:11:16,976 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 20:11:17] 2026-01-09 01:11:16,976 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 20:11:17] 2026-01-09 01:11:16,976 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 20:11:17] 2026-01-09 01:11:16,976 | CRITICAL | thread 'MainThread' is not alive
[2026-01-08 20:11:17] 2026-01-09 01:11:16,976 | INFO     | [monitor] control thread has ended
[2026-01-08 20:11:17] 2026-01-09 01:11:17,059 [wrapper] ==== pilot stdout END ====
[2026-01-08 20:11:17] 2026-01-09 01:11:17,061 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 20:11:17] 2026-01-09 01:11:17,062 [wrapper] pilotpid: 2826977
[2026-01-08 20:11:17] 2026-01-09 01:11:17,064 [wrapper] Pilot exit status: 0
[2026-01-08 20:11:17] 2026-01-09 01:11:17,069 [wrapper] pandaids: 6963146311
[2026-01-08 20:11:17] 2026-01-09 01:11:17,102 [wrapper] cleanup supervisor_pilot 2924715 2826978
[2026-01-08 20:11:17] 2026-01-09 01:11:17,104 [wrapper] Test setup, not cleaning
[2026-01-08 20:11:17] 2026-01-09 01:11:17,105 [wrapper] apfmon messages muted
[2026-01-08 20:11:17] 2026-01-09 01:11:17,107 [wrapper] ==== wrapper stdout END ====
[2026-01-08 20:11:17] 2026-01-09 01:11:17,108 [wrapper] ==== wrapper stderr END ====
[2026-01-08 20:11:17]  *** Error codes and diagnostics ***
[2026-01-08 20:11:17]     "exeErrorCode": 0,
[2026-01-08 20:11:17]     "exeErrorDiag": "",
[2026-01-08 20:11:17]     "pilotErrorCode": 0,
[2026-01-08 20:11:17]     "pilotErrorDiag": "",
[2026-01-08 20:11:17]  *** Listing of results directory ***
[2026-01-08 20:11:17] total 436828
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc    579449 Jan  8 10:02 pilot3.tar.gz
[2026-01-08 20:11:17] -rwx------ 1 boinc boinc     36322 Jan  8 10:03 runpilot2-wrapper.sh
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc      5112 Jan  8 10:04 queuedata.json
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc       100 Jan  8 19:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 20:11:17] -rwxr-xr-x 1 boinc boinc      7986 Jan  8 19:04 run_atlas
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc       105 Jan  8 19:04 job.xml
[2026-01-08 20:11:17] -rw-r--r-- 2 boinc boinc 226274615 Jan  8 19:04 EVNT.47898824._001052.pool.root.1
[2026-01-08 20:11:17] -rw-r--r-- 2 boinc boinc    592397 Jan  8 19:04 input.tar.gz
[2026-01-08 20:11:17] -rw-r--r-- 2 boinc boinc     15847 Jan  8 19:04 start_atlas.sh
[2026-01-08 20:11:17] drwxrwx--x 1 boinc boinc        76 Jan  8 19:04 shared
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc         0 Jan  8 19:04 boinc_setup_complete
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc      9259 Jan  8 19:04 init_data.xml
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc         0 Jan  8 19:04 boinc_lockfile
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc      2518 Jan  8 19:04 pandaJob.out
[2026-01-08 20:11:17] -rw------- 1 boinc boinc    989837 Jan  8 19:04 agis_schedconf.cvmfs.json
[2026-01-08 20:11:17] -rw------- 1 boinc boinc   1516240 Jan  8 19:04 agis_ddmendpoints.agis.ALL.json
[2026-01-08 20:11:17] drwx------ 1 boinc boinc       414 Jan  8 19:04 pilot3
[2026-01-08 20:11:17] -rw------- 1 boinc boinc 215211831 Jan  8 20:10 HITS.47898826._026691.pool.root.1
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc       529 Jan  8 20:10 boinc_task_state.xml
[2026-01-08 20:11:17] -rw------- 1 boinc boinc      1033 Jan  8 20:10 memory_monitor_summary.json
[2026-01-08 20:11:17] -rw------- 1 boinc boinc        95 Jan  8 20:10 pilot_heartbeat.json
[2026-01-08 20:11:17] -rw------- 1 boinc boinc    385765 Jan  8 20:10 log.47898826._026691.job.log.tgz.1
[2026-01-08 20:11:17] -rw------- 1 boinc boinc      7826 Jan  8 20:10 heartbeat.json
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc      8192 Jan  8 20:11 boinc_mmap_file
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc        27 Jan  8 20:11 wrapper_checkpoint.txt
[2026-01-08 20:11:17] -rw------- 1 boinc boinc       817 Jan  8 20:11 pilotlog.txt
[2026-01-08 20:11:17] -rw------- 1 boinc boinc    583148 Jan  8 20:11 log.47898826._026691.job.log.1
[2026-01-08 20:11:17] -rw------- 1 boinc boinc       357 Jan  8 20:11 output.list
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc       620 Jan  8 20:11 runtime_log
[2026-01-08 20:11:17] -rw------- 1 boinc boinc    983040 Jan  8 20:11 result.tar.gz
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc      8920 Jan  8 20:11 runtime_log.err
[2026-01-08 20:11:17] -rw------- 1 boinc boinc       671 Jan  8 20:11 JZUNDm3i6x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmafkKDmqdgMvn.diag
[2026-01-08 20:11:17] -rw-r--r-- 1 boinc boinc     22983 Jan  8 20:11 stderr.txt
[2026-01-08 20:11:17] HITS file was successfully produced:
[2026-01-08 20:11:17] -rw------- 1 boinc boinc 215211831 Jan  8 20:10 shared/HITS.pool.root.1
[2026-01-08 20:11:17]  *** Contents of shared directory: ***
[2026-01-08 20:11:17] total 432696
[2026-01-08 20:11:17] -rw-r--r-- 2 boinc boinc 226274615 Jan  8 19:04 ATLAS.root_0
[2026-01-08 20:11:17] -rw-r--r-- 2 boinc boinc    592397 Jan  8 19:04 input.tar.gz
[2026-01-08 20:11:17] -rw-r--r-- 2 boinc boinc     15847 Jan  8 19:04 start_atlas.sh
[2026-01-08 20:11:17] -rw------- 1 boinc boinc 215211831 Jan  8 20:10 HITS.pool.root.1
[2026-01-08 20:11:17] -rw------- 1 boinc boinc    983040 Jan  8 20:11 result.tar.gz
20:11:18 (2822239): run_atlas exited; CPU time 43814.531030
20:11:18 (2822239): called boinc_finish(0)

</stderr_txt>
]]>

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