Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:33:51 (3605592): wrapper (7.7.26015): starting
14:33:51 (3605592): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 14:33:51] Arguments: --nthreads 3
[2026-01-09 14:33:51] Threads: 3
[2026-01-09 14:33:51] Checking for CVMFS
[2026-01-09 14:33:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:33:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:33:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:33:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:33:51] 2.9.2.0 2993219 2440 80556 154945 0 57 21983316 36864001 0 130560 0 1574027 99.989 90593 4547 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 14:33:51] CVMFS is ok
[2026-01-09 14:33:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 14:33:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 14:33:51] Further information can be found at the LHC@home message board.
[2026-01-09 14:33:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:33:51] Checking for apptainer binary...
[2026-01-09 14:33:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:33:51] Running /usr/bin/apptainer --version
[2026-01-09 14:33:51] apptainer version 1.4.1-1.1
[2026-01-09 14:33:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:33:51] magicA161
[2026-01-09 14:33:51] apptainer works
[2026-01-09 14:33:51] Set ATHENA_PROC_NUMBER=3
[2026-01-09 14:33:51] Set ATHENA_CORE_NUMBER=3
[2026-01-09 14:33:51] Starting ATLAS job with PandaID=6963145006
[2026-01-09 14:33:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 16:26:21]  *** The last 200 lines of the pilot log: ***
[2026-01-09 16:26:21] 2026-01-09 15:25:50,562 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:26:21] 2026-01-09 15:25:50,562 | INFO     | aborting loop
[2026-01-09 16:26:21] 2026-01-09 15:25:50,871 | INFO     | all job control threads have been joined
[2026-01-09 16:26:21] 2026-01-09 15:25:50,980 | INFO     | [job] retrieve thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:50,980 | INFO     | [job] queue monitor thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:51,023 | INFO     | [data] control thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:51,161 | INFO     | [payload] validate_post thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:51,201 | INFO     | [payload] control thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:51,361 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 16:26:21] 2026-01-09 15:25:51,391 | INFO     | [data] copytool_in thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:51,542 | INFO     | [payload] failed_post thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:51,568 | INFO     | [job] job monitor thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:51,877 | INFO     | [job] control thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:51,927 | INFO     | [job] validate thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:52,033 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:52,037 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:52,039 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:53,367 | INFO     | [data] copytool_out thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:25:54,163 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:26:00,288 | INFO     | job.realtimelogging is not enabled
[2026-01-09 16:26:21] 2026-01-09 15:26:01,294 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 16:26:21] 2026-01-09 15:26:06,204 | INFO     | [monitor] cgroup control has ended
[2026-01-09 16:26:21] 2026-01-09 15:26:08,210 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139961195259712)>', '<ExcThread(monitor, started 139960915035904)>']
[2026-01-09 16:26:21] 2026-01-09 15:26:13,234 | INFO     | all workflow threads have been joined
[2026-01-09 16:26:21] 2026-01-09 15:26:13,235 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 16:26:21] 2026-01-09 15:26:13,235 | INFO     | traces error code: 0
[2026-01-09 16:26:21] 2026-01-09 15:26:13,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 16:26:21] 2026-01-09 15:26:20,905 | INFO     | PID=3609310 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 16:26:21] 2026-01-09 15:26:20,905 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 16:26:21] 2026-01-09 15:26:20,905 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 16:26:21] 2026-01-09 15:26:20,905 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 16:26:21] 2026-01-09 15:26:20,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 16:26:21] 2026-01-09 15:26:20,905 | INFO     | [monitor] control thread has ended
[2026-01-09 16:26:21] 2026-01-09 15:26:20,950 [wrapper] ==== pilot stdout END ====
[2026-01-09 16:26:21] 2026-01-09 15:26:20,952 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 16:26:21] 2026-01-09 15:26:20,954 [wrapper] pilotpid: 3609310
[2026-01-09 16:26:21] 2026-01-09 15:26:20,956 [wrapper] Pilot exit status: 0
[2026-01-09 16:26:21] 2026-01-09 15:26:20,963 [wrapper] pandaids: 6963145006
[2026-01-09 16:26:21] 2026-01-09 15:26:20,978 [wrapper] cleanup supervisor_pilot 3630176 3609311
[2026-01-09 16:26:21] 2026-01-09 15:26:20,981 [wrapper] Test setup, not cleaning
[2026-01-09 16:26:21] 2026-01-09 15:26:20,983 [wrapper] apfmon messages muted
[2026-01-09 16:26:21] 2026-01-09 15:26:20,985 [wrapper] ==== wrapper stdout END ====
[2026-01-09 16:26:21] 2026-01-09 15:26:20,988 [wrapper] ==== wrapper stderr END ====
[2026-01-09 16:26:21]  *** Error codes and diagnostics ***
[2026-01-09 16:26:21]     "exeErrorCode": 0,
[2026-01-09 16:26:21]     "exeErrorDiag": "",
[2026-01-09 16:26:21]     "pilotErrorCode": 0,
[2026-01-09 16:26:21]     "pilotErrorDiag": "",
[2026-01-09 16:26:21]  *** Listing of results directory ***
[2026-01-09 16:26:21] total 437476
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc      5112 Jan  8 16:02 queuedata.json
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc    579449 Jan  8 16:02 pilot3.tar.gz
[2026-01-09 16:26:21] -rwx------ 1 boinc boinc     36322 Jan  8 16:02 runpilot2-wrapper.sh
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc       100 Jan  9 14:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 16:26:21] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 14:33 run_atlas
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc       105 Jan  9 14:33 job.xml
[2026-01-09 16:26:21] -rw-r--r-- 2 boinc boinc 223534514 Jan  9 14:33 EVNT.47898824._001041.pool.root.1
[2026-01-09 16:26:21] -rw-r--r-- 2 boinc boinc    592393 Jan  9 14:33 input.tar.gz
[2026-01-09 16:26:21] -rw-r--r-- 2 boinc boinc     15847 Jan  9 14:33 start_atlas.sh
[2026-01-09 16:26:21] drwxrwx--x 2 boinc boinc      4096 Jan  9 14:33 shared
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc         0 Jan  9 14:33 boinc_setup_complete
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc      6448 Jan  9 14:33 init_data.xml
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc         0 Jan  9 14:33 boinc_lockfile
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc      2518 Jan  9 14:33 pandaJob.out
[2026-01-09 16:26:21] -rw------- 1 boinc boinc    989377 Jan  9 14:33 agis_schedconf.cvmfs.json
[2026-01-09 16:26:21] -rw------- 1 boinc boinc   1516240 Jan  9 14:33 agis_ddmendpoints.agis.ALL.json
[2026-01-09 16:26:21] drwx------ 5 boinc boinc      4096 Jan  9 14:33 pilot3
[2026-01-09 16:26:21] -rw------- 1 boinc boinc 218043704 Jan  9 16:25 HITS.47898826._025986.pool.root.1
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc       530 Jan  9 16:25 boinc_task_state.xml
[2026-01-09 16:26:21] -rw------- 1 boinc boinc        95 Jan  9 16:25 pilot_heartbeat.json
[2026-01-09 16:26:21] -rw------- 1 boinc boinc      1013 Jan  9 16:25 memory_monitor_summary.json
[2026-01-09 16:26:21] -rw------- 1 boinc boinc    282637 Jan  9 16:25 log.47898826._025986.job.log.tgz.1
[2026-01-09 16:26:21] -rw------- 1 boinc boinc      7752 Jan  9 16:25 heartbeat.json
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc        27 Jan  9 16:25 wrapper_checkpoint.txt
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc      8192 Jan  9 16:25 boinc_mmap_file
[2026-01-09 16:26:21] -rw------- 1 boinc boinc       747 Jan  9 16:26 pilotlog.txt
[2026-01-09 16:26:21] -rw------- 1 boinc boinc    970342 Jan  9 16:26 log.47898826._025986.job.log.1
[2026-01-09 16:26:21] -rw------- 1 boinc boinc       357 Jan  9 16:26 output.list
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc       620 Jan  9 16:26 runtime_log
[2026-01-09 16:26:21] -rw------- 1 boinc boinc   1269760 Jan  9 16:26 result.tar.gz
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc      8912 Jan  9 16:26 runtime_log.err
[2026-01-09 16:26:21] -rw------- 1 boinc boinc       662 Jan  9 16:26 kfLKDmuh6x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLckKDmPnBKgm.diag
[2026-01-09 16:26:21] -rw-r--r-- 1 boinc boinc      6824 Jan  9 16:26 stderr.txt
[2026-01-09 16:26:21] HITS file was successfully produced:
[2026-01-09 16:26:21] -rw------- 1 boinc boinc 218043704 Jan  9 16:25 shared/HITS.pool.root.1
[2026-01-09 16:26:21]  *** Contents of shared directory: ***
[2026-01-09 16:26:21] total 433076
[2026-01-09 16:26:21] -rw-r--r-- 2 boinc boinc 223534514 Jan  9 14:33 ATLAS.root_0
[2026-01-09 16:26:21] -rw-r--r-- 2 boinc boinc    592393 Jan  9 14:33 input.tar.gz
[2026-01-09 16:26:21] -rw-r--r-- 2 boinc boinc     15847 Jan  9 14:33 start_atlas.sh
[2026-01-09 16:26:21] -rw------- 1 boinc boinc 218043704 Jan  9 16:25 HITS.pool.root.1
[2026-01-09 16:26:21] -rw------- 1 boinc boinc   1269760 Jan  9 16:26 result.tar.gz
16:26:22 (3605592): run_atlas exited; CPU time 19383.422831
16:26:22 (3605592): called boinc_finish(0)

</stderr_txt>
]]>

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