Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:40:36 (1724212): wrapper (7.7.26015): starting
05:40:36 (1724212): wrapper: running run_atlas (--nthreads 4)
[2026-01-09 05:40:36] Arguments: --nthreads 4
[2026-01-09 05:40:36] Threads: 4
[2026-01-09 05:40:36] Checking for CVMFS
[2026-01-09 05:40:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 05:40:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 05:40:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 05:40:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 05:40:36] 2.9.2.0 1163962 1867 92200 154931 3 57 20244441 36864000 0 130560 0 1501283 99.990 71837 4977 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 05:40:36] CVMFS is ok
[2026-01-09 05:40:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 05:40:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 05:40:36] Further information can be found at the LHC@home message board.
[2026-01-09 05:40:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 05:40:36] Checking for apptainer binary...
[2026-01-09 05:40:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 05:40:36] Running /usr/bin/apptainer --version
[2026-01-09 05:40:36] apptainer version 1.4.1-1.1
[2026-01-09 05:40:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 05:40:36] magicA244a
[2026-01-09 05:40:36] apptainer works
[2026-01-09 05:40:36] Set ATHENA_PROC_NUMBER=4
[2026-01-09 05:40:36] Set ATHENA_CORE_NUMBER=4
[2026-01-09 05:40:36] Starting ATLAS job with PandaID=6962913589
[2026-01-09 05:40:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 07:05:56]  *** The last 200 lines of the pilot log: ***
[2026-01-09 07:05:56] 2026-01-09 06:05:16,541 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,541 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,541 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,541 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,541 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,541 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,541 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,541 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,541 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,541 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,541 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,542 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,542 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 07:05:56] 2026-01-09 06:05:16,542 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,542 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 07:05:56] 2026-01-09 06:05:16,542 | INFO     | job 6962913589 has completed (purged errors)
[2026-01-09 07:05:56] 2026-01-09 06:05:16,542 | INFO     | overall cleanup function is called
[2026-01-09 07:05:56] 2026-01-09 06:05:17,548 | INFO     | --- collectZombieJob: --- 10, [1734561]
[2026-01-09 07:05:56] 2026-01-09 06:05:17,548 | INFO     | zombie collector waiting for pid 1734561
[2026-01-09 07:05:56] 2026-01-09 06:05:17,548 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 07:05:56] 2026-01-09 06:05:17,549 | INFO     | collected zombie processes
[2026-01-09 07:05:56] 2026-01-09 06:05:17,549 | INFO     | will attempt to kill all subprocesses of pid=1734561
[2026-01-09 07:05:56] 2026-01-09 06:05:17,595 | INFO     | process IDs to be killed: [1734561] (in reverse order)
[2026-01-09 07:05:56] 2026-01-09 06:05:17,622 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 07:05:56] 2026-01-09 06:05:17,622 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 07:05:56] 2026-01-09 06:05:17,623 | INFO     | did not find any defunct processes belonging to 1734561
[2026-01-09 07:05:56] 2026-01-09 06:05:17,624 | INFO     | did not find any defunct processes belonging to 1734561
[2026-01-09 07:05:56] 2026-01-09 06:05:17,625 | INFO     | ready for new job
[2026-01-09 07:05:56] 2026-01-09 06:05:17,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 07:05:56] 2026-01-09 06:05:17,625 | INFO     | ***************************************
[2026-01-09 07:05:56] 2026-01-09 06:05:17,625 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 07:05:56] 2026-01-09 06:05:17,625 | INFO     | ***************************************
[2026-01-09 07:05:56] 2026-01-09 06:05:17,625 | INFO     | 
[2026-01-09 07:05:56] 2026-01-09 06:05:17,626 | INFO     | architecture information:
[2026-01-09 07:05:56] 2026-01-09 06:05:17,626 | INFO     | executing command: cat /etc/os-release
[2026-01-09 07:05:56] 2026-01-09 06:05:17,636 | INFO     | cat /etc/os-release:
[2026-01-09 07:05:56] NAME="CentOS Linux"
[2026-01-09 07:05:56] VERSION="7 (Core)"
[2026-01-09 07:05:56] ID="centos"
[2026-01-09 07:05:56] ID_LIKE="rhel fedora"
[2026-01-09 07:05:56] VERSION_ID="7"
[2026-01-09 07:05:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 07:05:56] ANSI_COLOR="0;31"
[2026-01-09 07:05:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 07:05:56] HOME_URL="https://www.centos.org/"
[2026-01-09 07:05:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 07:05:56] 
[2026-01-09 07:05:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 07:05:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 07:05:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 07:05:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 07:05:56] 
[2026-01-09 07:05:56] 2026-01-09 06:05:17,636 | INFO     | ***************************************
[2026-01-09 07:05:56] 2026-01-09 06:05:18,139 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 07:05:56] 2026-01-09 06:05:18,153 | INFO     | sufficient remaining disk space (340677099520 B)
[2026-01-09 07:05:56] 2026-01-09 06:05:18,153 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 07:05:56] 2026-01-09 06:05:18,153 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 07:05:56] 2026-01-09 06:05:18,153 | INFO     | update_server=False
[2026-01-09 07:05:56] 2026-01-09 06:05:18,153 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 07:05:56] 2026-01-09 06:05:18,153 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:05:56] 2026-01-09 06:05:18,153 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 07:05:56] 2026-01-09 06:05:18,588 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 07:05:56] 2026-01-09 06:05:18,588 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 07:05:56] 2026-01-09 06:05:18,588 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 07:05:56] 2026-01-09 06:05:18,589 | INFO     | will abort loop
[2026-01-09 07:05:56] 2026-01-09 06:05:18,793 | INFO     | all payload control threads have been joined
[2026-01-09 07:05:56] 2026-01-09 06:05:18,879 | INFO     | all data control threads have been joined
[2026-01-09 07:05:56] 2026-01-09 06:05:19,158 | INFO     | [job] retrieve thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:19,159 | INFO     | [job] queue monitor thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:19,211 | INFO     | all job control threads have been joined
[2026-01-09 07:05:56] 2026-01-09 06:05:19,213 | INFO     | [payload] failed_post thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:19,594 | INFO     | [job] job monitor thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:19,799 | INFO     | [payload] control thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:19,885 | INFO     | [data] control thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:19,889 | INFO     | [data] copytool_in thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:19,893 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:20,036 | INFO     | [job] validate thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:20,150 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:20,150 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:20,159 | INFO     | [data] copytool_out thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:20,217 | INFO     | [job] control thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:20,732 | INFO     | [payload] validate_post thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:21,525 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 07:05:56] 2026-01-09 06:05:25,532 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:28,435 | INFO     | job.realtimelogging is not enabled
[2026-01-09 07:05:56] 2026-01-09 06:05:29,440 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 07:05:56] 2026-01-09 06:05:49,100 | INFO     | PID=1728002 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 07:05:56] 2026-01-09 06:05:49,100 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 07:05:56] 2026-01-09 06:05:49,100 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 07:05:56] 2026-01-09 06:05:49,100 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 07:05:56] 2026-01-09 06:05:49,967 | INFO     | [monitor] cgroup control has ended
[2026-01-09 07:05:56] 2026-01-09 06:05:51,245 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140083166148416)>', '<ExcThread(monitor, started 140082665203456)>']
[2026-01-09 07:05:56] 2026-01-09 06:05:52,117 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 07:05:56] 2026-01-09 06:05:52,117 | INFO     | [monitor] control thread has ended
[2026-01-09 07:05:56] 2026-01-09 06:05:56,271 | INFO     | all workflow threads have been joined
[2026-01-09 07:05:56] 2026-01-09 06:05:56,271 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 07:05:56] 2026-01-09 06:05:56,271 | INFO     | traces error code: 0
[2026-01-09 07:05:56] 2026-01-09 06:05:56,272 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 07:05:56] 2026-01-09 06:05:56,327 [wrapper] ==== pilot stdout END ====
[2026-01-09 07:05:56] 2026-01-09 06:05:56,329 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 07:05:56] 2026-01-09 06:05:56,331 [wrapper] pilotpid: 1728002
[2026-01-09 07:05:56] 2026-01-09 06:05:56,334 [wrapper] Pilot exit status: 0
[2026-01-09 07:05:56] 2026-01-09 06:05:56,342 [wrapper] pandaids: 6962913589
[2026-01-09 07:05:56] 2026-01-09 06:05:56,360 [wrapper] cleanup supervisor_pilot 1746924 1728003
[2026-01-09 07:05:56] 2026-01-09 06:05:56,363 [wrapper] Test setup, not cleaning
[2026-01-09 07:05:56] 2026-01-09 06:05:56,365 [wrapper] apfmon messages muted
[2026-01-09 07:05:56] 2026-01-09 06:05:56,368 [wrapper] ==== wrapper stdout END ====
[2026-01-09 07:05:56] 2026-01-09 06:05:56,370 [wrapper] ==== wrapper stderr END ====
[2026-01-09 07:05:56]  *** Error codes and diagnostics ***
[2026-01-09 07:05:56]     "exeErrorCode": 0,
[2026-01-09 07:05:56]     "exeErrorDiag": "",
[2026-01-09 07:05:56]     "pilotErrorCode": 0,
[2026-01-09 07:05:56]     "pilotErrorDiag": "",
[2026-01-09 07:05:56]  *** Listing of results directory ***
[2026-01-09 07:05:56] total 432648
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:56 pilot3.tar.gz
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc      5112 Jan  8 08:59 queuedata.json
[2026-01-09 07:05:56] -rwx------ 1 boinc boinc     36322 Jan  8 08:59 runpilot2-wrapper.sh
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc       100 Jan  9 05:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 07:05:56] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 05:40 run_atlas
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc       105 Jan  9 05:40 job.xml
[2026-01-09 07:05:56] -rw-r--r-- 2 boinc boinc 225579583 Jan  9 05:40 EVNT.47898824._000779.pool.root.1
[2026-01-09 07:05:56] -rw-r--r-- 2 boinc boinc    592393 Jan  9 05:40 input.tar.gz
[2026-01-09 07:05:56] -rw-r--r-- 2 boinc boinc     15847 Jan  9 05:40 start_atlas.sh
[2026-01-09 07:05:56] drwxrwx--x 2 boinc boinc      4096 Jan  9 05:40 shared
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc         0 Jan  9 05:40 boinc_setup_complete
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc      6438 Jan  9 05:40 init_data.xml
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc         0 Jan  9 05:40 boinc_lockfile
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc      2518 Jan  9 05:40 pandaJob.out
[2026-01-09 07:05:56] -rw------- 1 boinc boinc    989771 Jan  9 05:40 agis_schedconf.cvmfs.json
[2026-01-09 07:05:56] -rw------- 1 boinc boinc   1516240 Jan  9 05:40 agis_ddmendpoints.agis.ALL.json
[2026-01-09 07:05:56] drwx------ 5 boinc boinc      4096 Jan  9 05:40 pilot3
[2026-01-09 07:05:56] -rw------- 1 boinc boinc 211530639 Jan  9 07:04 HITS.47898826._016982.pool.root.1
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc       529 Jan  9 07:04 boinc_task_state.xml
[2026-01-09 07:05:56] -rw------- 1 boinc boinc      1016 Jan  9 07:05 memory_monitor_summary.json
[2026-01-09 07:05:56] -rw------- 1 boinc boinc    264344 Jan  9 07:05 log.47898826._016982.job.log.tgz.1
[2026-01-09 07:05:56] -rw------- 1 boinc boinc        95 Jan  9 07:05 pilot_heartbeat.json
[2026-01-09 07:05:56] -rw------- 1 boinc boinc      7767 Jan  9 07:05 heartbeat.json
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc      8192 Jan  9 07:05 boinc_mmap_file
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc        27 Jan  9 07:05 wrapper_checkpoint.txt
[2026-01-09 07:05:56] -rw------- 1 boinc boinc      5010 Jan  9 07:05 pilotlog.txt
[2026-01-09 07:05:56] -rw------- 1 boinc boinc    743956 Jan  9 07:05 log.47898826._016982.job.log.1
[2026-01-09 07:05:56] -rw------- 1 boinc boinc       357 Jan  9 07:05 output.list
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc       620 Jan  9 07:05 runtime_log
[2026-01-09 07:05:56] -rw------- 1 boinc boinc   1024000 Jan  9 07:05 result.tar.gz
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc      8917 Jan  9 07:05 runtime_log.err
[2026-01-09 07:05:56] -rw------- 1 boinc boinc       662 Jan  9 07:05 FWsKDmw6zx8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmADeKDmDT4xSn.diag
[2026-01-09 07:05:56] -rw-r--r-- 1 boinc boinc     12676 Jan  9 07:05 stderr.txt
[2026-01-09 07:05:56] HITS file was successfully produced:
[2026-01-09 07:05:56] -rw------- 1 boinc boinc 211530639 Jan  9 07:04 shared/HITS.pool.root.1
[2026-01-09 07:05:56]  *** Contents of shared directory: ***
[2026-01-09 07:05:56] total 428476
[2026-01-09 07:05:56] -rw-r--r-- 2 boinc boinc 225579583 Jan  9 05:40 ATLAS.root_0
[2026-01-09 07:05:56] -rw-r--r-- 2 boinc boinc    592393 Jan  9 05:40 input.tar.gz
[2026-01-09 07:05:56] -rw-r--r-- 2 boinc boinc     15847 Jan  9 05:40 start_atlas.sh
[2026-01-09 07:05:56] -rw------- 1 boinc boinc 211530639 Jan  9 07:04 HITS.pool.root.1
[2026-01-09 07:05:56] -rw------- 1 boinc boinc   1024000 Jan  9 07:05 result.tar.gz
07:05:57 (1724212): run_atlas exited; CPU time 19342.277158
07:05:57 (1724212): called boinc_finish(0)

</stderr_txt>
]]>

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