Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:22:55 (3047448): wrapper (7.7.26015): starting
20:22:55 (3047448): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 20:22:55] Arguments: --nthreads 8
[2026-01-08 20:22:55] Threads: 8
[2026-01-08 20:22:55] Checking for CVMFS
[2026-01-08 20:22:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 20:22:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 20:22:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 20:22:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 20:22:57] 2.13.3.0 1263916 16257 171136 154926 2 64 23755490 40960001 14070 16776704 0 19273047 99.559 18793197 40366 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 20:22:57] CVMFS is ok
[2026-01-08 20:22:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 20:22:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 20:22:57] Further information can be found at the LHC@home message board.
[2026-01-08 20:22:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 20:22:57] Checking for apptainer binary...
[2026-01-08 20:22:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 20:22:57] Running /usr/bin/apptainer --version
[2026-01-08 20:22:57] apptainer version 1.4.5-2.el9
[2026-01-08 20:22:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 20:23:18] c-206-34.aglt2.org
[2026-01-08 20:23:18] apptainer works
[2026-01-08 20:23:18] Set ATHENA_PROC_NUMBER=8
[2026-01-08 20:23:18] Set ATHENA_CORE_NUMBER=8
[2026-01-08 20:23:18] Starting ATLAS job with PandaID=6962919069
[2026-01-08 20:23:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 03:32:29]  *** The last 200 lines of the pilot log: ***
[2026-01-09 03:32:29] 2026-01-09 08:31:54,935 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6962919069/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 03:32:29] 2026-01-09 08:31:54,935 | INFO     | extracted standard info from prmon json
[2026-01-09 03:32:29] 2026-01-09 08:31:54,936 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 03:32:29] 2026-01-09 08:31:54,936 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 03:32:29] 2026-01-09 08:31:54,936 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 03:32:29] 2026-01-09 08:31:54,936 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 03:32:29] 2026-01-09 08:31:54,942 | INFO     | fitting pss+swap vs Time
[2026-01-09 03:32:29] 2026-01-09 08:31:54,942 | INFO     | sum of square deviations: 22485947447.96166
[2026-01-09 03:32:29] 2026-01-09 08:31:54,946 | INFO     | sum of deviations: 30063836477.247
[2026-01-09 03:32:29] 2026-01-09 08:31:54,946 | INFO     | mean x: 1767934741.3429255
[2026-01-09 03:32:29] 2026-01-09 08:31:54,946 | INFO     | mean y: 2523307.3549160673
[2026-01-09 03:32:29] 2026-01-09 08:31:54,946 | INFO     | intersect: -2361215249.322881
[2026-01-09 03:32:29] 2026-01-09 08:31:54,946 | INFO     | chi2: 5.463187186332778
[2026-01-09 03:32:29] 2026-01-09 08:31:54,947 | INFO     | sum of square deviations: 21686597554.06555
[2026-01-09 03:32:29] 2026-01-09 08:31:54,950 | INFO     | sum of deviations: 55709405733.441696
[2026-01-09 03:32:29] 2026-01-09 08:31:54,950 | INFO     | mean x: 1767934588.8228154
[2026-01-09 03:32:29] 2026-01-09 08:31:54,950 | INFO     | mean y: 2528153.1019417476
[2026-01-09 03:32:29] 2026-01-09 08:31:54,950 | INFO     | intersect: -4539013463.713452
[2026-01-09 03:32:29] 2026-01-09 08:31:54,951 | INFO     | chi2: 4.803517053108243
[2026-01-09 03:32:29] 2026-01-09 08:31:54,951 | INFO     | current chi2=4.803517053108243 (change=12.074822090570638 %)
[2026-01-09 03:32:29] 2026-01-09 08:31:54,951 | INFO     | right removable region: 411
[2026-01-09 03:32:29] 2026-01-09 08:31:54,951 | INFO     | sum of square deviations: 21686636073.834766
[2026-01-09 03:32:29] 2026-01-09 08:31:54,955 | INFO     | sum of deviations: -101517931620.59714
[2026-01-09 03:32:29] 2026-01-09 08:31:54,955 | INFO     | mean x: 1767934893.8592234
[2026-01-09 03:32:29] 2026-01-09 08:31:54,955 | INFO     | mean y: 2548383.6966019417
[2026-01-09 03:32:29] 2026-01-09 08:31:54,955 | INFO     | intersect: 8278478917.755314
[2026-01-09 03:32:29] 2026-01-09 08:31:54,955 | INFO     | chi2: 1.777145514294773
[2026-01-09 03:32:29] 2026-01-09 08:31:54,955 | INFO     | current chi2=1.777145514294773 (change=67.47053590364528 %)
[2026-01-09 03:32:29] 2026-01-09 08:31:54,956 | INFO     | sum of square deviations: 20906538238.9778
[2026-01-09 03:32:29] 2026-01-09 08:31:54,959 | INFO     | sum of deviations: -143931403754.37335
[2026-01-09 03:32:29] 2026-01-09 08:31:54,959 | INFO     | mean x: 1767935046.3710074
[2026-01-09 03:32:29] 2026-01-09 08:31:54,959 | INFO     | mean y: 2556644.154791155
[2026-01-09 03:32:29] 2026-01-09 08:31:54,959 | INFO     | intersect: 12173934328.113905
[2026-01-09 03:32:29] 2026-01-09 08:31:54,960 | INFO     | chi2: 1.2441916048135402
[2026-01-09 03:32:29] 2026-01-09 08:31:54,960 | INFO     | current chi2=1.2441916048135402 (change=29.989323057359517 %)
[2026-01-09 03:32:29] 2026-01-09 08:31:54,960 | INFO     | sum of square deviations: 20145346040.736332
[2026-01-09 03:32:29] 2026-01-09 08:31:54,963 | INFO     | sum of deviations: -147253368348.88052
[2026-01-09 03:32:29] 2026-01-09 08:31:54,963 | INFO     | mean x: 1767935198.8855722
[2026-01-09 03:32:29] 2026-01-09 08:31:54,964 | INFO     | mean y: 2557303.5895522386
[2026-01-09 03:32:29] 2026-01-09 08:31:54,964 | INFO     | intersect: 12925364016.962494
[2026-01-09 03:32:29] 2026-01-09 08:31:54,964 | INFO     | chi2: 1.2254708867295583
[2026-01-09 03:32:29] 2026-01-09 08:31:54,964 | INFO     | current chi2=1.2254708867295583 (change=1.5046491241023499 %)
[2026-01-09 03:32:29] 2026-01-09 08:31:54,964 | INFO     | left removable region: 30
[2026-01-09 03:32:29] 2026-01-09 08:31:54,965 | INFO     | sum of square deviations: 17149670280.304413
[2026-01-09 03:32:29] 2026-01-09 08:31:54,968 | INFO     | sum of deviations: -69921554150.97632
[2026-01-09 03:32:29] 2026-01-09 08:31:54,968 | INFO     | mean x: 1767935473.4120734
[2026-01-09 03:32:29] 2026-01-09 08:31:54,968 | INFO     | mean y: 2551806.2992125982
[2026-01-09 03:32:29] 2026-01-09 08:31:54,968 | INFO     | intersect: 7210666826.538541
[2026-01-09 03:32:29] 2026-01-09 08:31:54,969 | INFO     | chi2: 0.40535544595766615
[2026-01-09 03:32:29] 2026-01-09 08:31:54,969 | INFO     | current memory leak: -4.08 B/s (using 381 data points, chi2=0.41)
[2026-01-09 03:32:29] 2026-01-09 08:31:54,969 | INFO     | could have reported an average CPU frequency of 3289 MHz (18 samples)
[2026-01-09 03:32:29] 2026-01-09 08:31:54,969 | INFO     | ..............................
[2026-01-09 03:32:29] 2026-01-09 08:31:54,969 | INFO     | . Timing measurements:
[2026-01-09 03:32:29] 2026-01-09 08:31:54,969 | INFO     | . get job = 0 s
[2026-01-09 03:32:29] 2026-01-09 08:31:54,969 | INFO     | . initial setup = 6 s
[2026-01-09 03:32:29] 2026-01-09 08:31:54,970 | INFO     | . payload setup = 67 s
[2026-01-09 03:32:29] 2026-01-09 08:31:54,970 | INFO     | . stage-in = 0 s
[2026-01-09 03:32:29] 2026-01-09 08:31:54,970 | INFO     | . payload execution = 25463 s
[2026-01-09 03:32:29] 2026-01-09 08:31:54,970 | INFO     | . stage-out = 4 s
[2026-01-09 03:32:29] 2026-01-09 08:31:54,970 | INFO     | . log creation = 0 s
[2026-01-09 03:32:29] 2026-01-09 08:31:54,970 | INFO     | ..............................
[2026-01-09 03:32:29] 2026-01-09 08:31:55,341 | INFO     | 
[2026-01-09 03:32:29] 2026-01-09 08:31:55,341 | INFO     | job summary report
[2026-01-09 03:32:29] 2026-01-09 08:31:55,341 | INFO     | --------------------------------------------------
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | PanDA job id: 6962919069
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | task id: 47898826
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | errors: (none)
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | pilot state: finished 
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | transexitcode: 0
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | exeerrorcode: 0
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | exeerrordiag: 
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | exitcode: 0
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | exitmsg: OK
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | cpuconsumptiontime: 46346 s
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | nevents: 400
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | neventsw: 0
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | pid: 3059483
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | pgrp: 3059483
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | corecount: 8
[2026-01-09 03:32:29] 2026-01-09 08:31:55,342 | INFO     | event service: False
[2026-01-09 03:32:29] 2026-01-09 08:31:55,343 | INFO     | sizes: {0: 2283798, 1: 2283969, 2: 2283997, 13: 2284025, 24: 2284081, 35: 2284527, 45: 2284527, 25536: 2320962, 25541: 2329960, 25544: 2330016, 25564: 2330040}
[2026-01-09 03:32:29] 2026-01-09 08:31:55,343 | INFO     | --------------------------------------------------
[2026-01-09 03:32:29] 2026-01-09 08:31:55,343 | INFO     | 
[2026-01-09 03:32:29] 2026-01-09 08:31:55,343 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-09 03:32:29] 2026-01-09 08:31:55,569 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,570 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,571 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,571 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 03:32:29] 2026-01-09 08:31:55,571 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,571 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 03:32:29] 2026-01-09 08:31:55,571 | INFO     | job 6962919069 has completed (purged errors)
[2026-01-09 03:32:29] 2026-01-09 08:31:55,571 | INFO     | overall cleanup function is called
[2026-01-09 03:32:29] 2026-01-09 08:31:55,786 | INFO     | PID=3051734 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 03:32:29] 2026-01-09 08:31:55,786 | INFO     | .. there are 12 such processes running
[2026-01-09 03:32:29] 2026-01-09 08:31:56,622 | INFO     | --- collectZombieJob: --- 10, [3059483]
[2026-01-09 03:32:29] 2026-01-09 08:31:56,622 | INFO     | zombie collector waiting for pid 3059483
[2026-01-09 03:32:29] 2026-01-09 08:31:56,622 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 03:32:29] 2026-01-09 08:31:56,622 | INFO     | collected zombie processes
[2026-01-09 03:32:29] 2026-01-09 08:31:56,622 | INFO     | will attempt to kill all subprocesses of pid=3059483
[2026-01-09 03:32:29] 2026-01-09 08:31:57,626 | INFO     | process IDs to be killed: [3059483] (in reverse order)
[2026-01-09 03:32:29] 2026-01-09 08:31:58,264 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 03:32:29] 2026-01-09 08:31:58,264 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 03:32:29] 2026-01-09 08:31:58,275 | INFO     | did not find any defunct processes belonging to 3059483
[2026-01-09 03:32:29] 2026-01-09 08:31:58,284 | INFO     | did not find any defunct processes belonging to 3059483
[2026-01-09 03:32:29] 2026-01-09 08:31:58,284 | INFO     | ready for new job
[2026-01-09 03:32:29] 2026-01-09 08:31:58,284 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 03:32:29] 2026-01-09 08:31:58,287 | INFO     | ***************************************
[2026-01-09 03:32:29] 2026-01-09 08:31:58,287 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 03:32:29] 2026-01-09 08:31:58,287 | INFO     | ***************************************
[2026-01-09 03:32:29] 2026-01-09 08:31:58,287 | INFO     | 
[2026-01-09 03:32:29] 2026-01-09 08:31:58,291 | INFO     | architecture information:
[2026-01-09 03:32:29] 2026-01-09 08:31:58,291 | INFO     | executing command: cat /etc/os-release
[2026-01-09 03:32:29] 2026-01-09 08:31:58,321 | INFO     | cat /etc/os-release:
[2026-01-09 03:32:29] NAME="CentOS Linux"
[2026-01-09 03:32:29] VERSION="7 (Core)"
[2026-01-09 03:32:29] ID="centos"
[2026-01-09 03:32:29] ID_LIKE="rhel fedora"
[2026-01-09 03:32:29] VERSION_ID="7"
[2026-01-09 03:32:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 03:32:29] ANSI_COLOR="0;31"
[2026-01-09 03:32:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 03:32:29] HOME_URL="https://www.centos.org/"
[2026-01-09 03:32:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 03:32:29] 
[2026-01-09 03:32:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 03:32:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 03:32:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 03:32:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 03:32:29] 
[2026-01-09 03:32:29] 2026-01-09 08:31:58,321 | INFO     | ***************************************
[2026-01-09 03:32:29] 2026-01-09 08:31:58,825 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-09 03:32:29] 2026-01-09 08:31:58,974 | INFO     | sufficient remaining disk space (84623228928 B)
[2026-01-09 03:32:29] 2026-01-09 08:31:58,975 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 03:32:29] 2026-01-09 08:31:58,975 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 03:32:29] 2026-01-09 08:31:58,975 | INFO     | update_server=False
[2026-01-09 03:32:29] 2026-01-09 08:31:58,975 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 03:32:29] 2026-01-09 08:31:58,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 03:32:29] 2026-01-09 08:31:59,116 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 03:32:29] 2026-01-09 08:31:59,116 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 03:32:29] 2026-01-09 08:31:59,116 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 03:32:29] 2026-01-09 08:31:59,116 | INFO     | will abort loop
[2026-01-09 03:32:29] 2026-01-09 08:31:59,726 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 03:32:29] 2026-01-09 08:31:59,806 | INFO     | all data control threads have been joined
[2026-01-09 03:32:29] 2026-01-09 08:31:59,814 | INFO     | all payload control threads have been joined
[2026-01-09 03:32:29] 2026-01-09 08:31:59,981 | INFO     | [job] retrieve thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:31:59,994 | INFO     | all job control threads have been joined
[2026-01-09 03:32:29] 2026-01-09 08:32:00,080 | INFO     | [payload] failed_post thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:00,123 | INFO     | [job] job monitor thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:00,333 | INFO     | [data] copytool_in thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:00,357 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 03:32:29] 2026-01-09 08:32:00,407 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:00,812 | INFO     | [data] control thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:00,820 | INFO     | [payload] control thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:00,879 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:00,883 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:00,884 | INFO     | [job] validate thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:00,999 | INFO     | [data] copytool_out thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:01,001 | INFO     | [job] control thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:01,144 | INFO     | [payload] validate_post thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:01,368 | INFO     | [job] queue monitor thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:01,429 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:03,739 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 03:32:29] 2026-01-09 08:32:20,181 | INFO     | [monitor] cgroup control has ended
[2026-01-09 03:32:29] 2026-01-09 08:32:22,186 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140371474917184)>', '<ExcThread(monitor, started 140371132671744)>']
[2026-01-09 03:32:29] 2026-01-09 08:32:27,214 | INFO     | all workflow threads have been joined
[2026-01-09 03:32:29] 2026-01-09 08:32:27,214 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 03:32:29] 2026-01-09 08:32:27,214 | INFO     | traces error code: 0
[2026-01-09 03:32:29] 2026-01-09 08:32:27,214 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 03:32:29] 2026-01-09 08:32:28,166 | INFO     | PID=3051734 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 03:32:29] 2026-01-09 08:32:28,166 | INFO     | .. there are 12 such processes running
[2026-01-09 03:32:29] 2026-01-09 08:32:28,167 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 03:32:29] 2026-01-09 08:32:28,167 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 03:32:29] 2026-01-09 08:32:28,167 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 03:32:29] 2026-01-09 08:32:28,167 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 03:32:29] 2026-01-09 08:32:28,167 | INFO     | [monitor] control thread has ended
[2026-01-09 03:32:29] 2026-01-09 08:32:28,639 [wrapper] ==== pilot stdout END ====
[2026-01-09 03:32:29] 2026-01-09 08:32:28,684 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 03:32:29] 2026-01-09 08:32:28,725 [wrapper] pilotpid: 3051734
[2026-01-09 03:32:29] 2026-01-09 08:32:28,767 [wrapper] Pilot exit status: 0
[2026-01-09 03:32:29] 2026-01-09 08:32:28,884 [wrapper] pandaids: 6962919069
[2026-01-09 03:32:29] 2026-01-09 08:32:29,167 [wrapper] cleanup supervisor_pilot 3872227 3051735
[2026-01-09 03:32:29] 2026-01-09 08:32:29,171 [wrapper] Test setup, not cleaning
[2026-01-09 03:32:29] 2026-01-09 08:32:29,175 [wrapper] apfmon messages muted
[2026-01-09 03:32:29] 2026-01-09 08:32:29,178 [wrapper] ==== wrapper stdout END ====
[2026-01-09 03:32:29] 2026-01-09 08:32:29,181 [wrapper] ==== wrapper stderr END ====
[2026-01-09 03:32:29]  *** Error codes and diagnostics ***
[2026-01-09 03:32:29]     "exeErrorCode": 0,
[2026-01-09 03:32:29]     "exeErrorDiag": "",
[2026-01-09 03:32:29]     "pilotErrorCode": 0,
[2026-01-09 03:32:29]     "pilotErrorDiag": "",
[2026-01-09 03:32:29]  *** Listing of results directory ***
[2026-01-09 03:32:29] total 449124
[2026-01-09 03:32:29] -rwx------. 1 boincer umatlas     36322 Jan  8 03:06 runpilot2-wrapper.sh
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:11 queuedata.json
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:11 pilot3.tar.gz
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas       100 Jan  8 20:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 03:32:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 20:22 run_atlas
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas       105 Jan  8 20:22 job.xml
[2026-01-09 03:32:29] -rw-r--r--. 2 boincer umatlas 225175539 Jan  8 20:22 EVNT.47898824._000837.pool.root.1
[2026-01-09 03:32:29] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 20:22 start_atlas.sh
[2026-01-09 03:32:29] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 20:22 shared
[2026-01-09 03:32:29] -rw-r--r--. 2 boincer umatlas    592399 Jan  8 20:22 input.tar.gz
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas         0 Jan  8 20:22 boinc_lockfile
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas      2519 Jan  8 20:23 pandaJob.out
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas        57 Jan  8 20:23 setup.sh.local
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas    989821 Jan  8 20:24 agis_schedconf.cvmfs.json
[2026-01-09 03:32:29] drwx------. 5 boincer umatlas      4096 Jan  8 20:24 pilot3
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas 222802976 Jan  9 03:29 HITS.47898826._020996.pool.root.1
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas       531 Jan  9 03:29 boinc_task_state.xml
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas      1028 Jan  9 03:31 memory_monitor_summary.json
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas   1516240 Jan  9 03:31 agis_ddmendpoints.agis.ALL.json
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas      6908 Jan  9 03:31 init_data.xml
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas    620919 Jan  9 03:31 log.47898826._020996.job.log.tgz.1
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas      7774 Jan  9 03:31 heartbeat.json
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 03:32 boinc_mmap_file
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas        28 Jan  9 03:32 wrapper_checkpoint.txt
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas        95 Jan  9 03:32 pilot_heartbeat.json
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas       823 Jan  9 03:32 pilotlog.txt
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas   3385703 Jan  9 03:32 log.47898826._020996.job.log.1
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas       357 Jan  9 03:32 output.list
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas       620 Jan  9 03:32 runtime_log
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas   4024320 Jan  9 03:32 result.tar.gz
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 03:32 runtime_log.err
[2026-01-09 03:32:29] -rw-------. 1 boincer umatlas       657 Jan  9 03:32 hE5KDmyD0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyqjKDmi5k23n.diag
[2026-01-09 03:32:29] -rw-r--r--. 1 boincer umatlas     21056 Jan  9 03:32 stderr.txt
[2026-01-09 03:32:30] HITS file was successfully produced:
[2026-01-09 03:32:30] -rw-------. 1 boincer umatlas 222802976 Jan  9 03:29 shared/HITS.pool.root.1
[2026-01-09 03:32:30]  *** Contents of shared directory: ***
[2026-01-09 03:32:30] total 442016
[2026-01-09 03:32:30] -rw-r--r--. 2 boincer umatlas 225175539 Jan  8 20:22 ATLAS.root_0
[2026-01-09 03:32:30] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 20:22 start_atlas.sh
[2026-01-09 03:32:30] -rw-r--r--. 2 boincer umatlas    592399 Jan  8 20:22 input.tar.gz
[2026-01-09 03:32:30] -rw-------. 1 boincer umatlas 222802976 Jan  9 03:29 HITS.pool.root.1
[2026-01-09 03:32:30] -rw-------. 1 boincer umatlas   4024320 Jan  9 03:32 result.tar.gz
03:32:31 (3047448): run_atlas exited; CPU time 46693.986699
03:32:31 (3047448): called boinc_finish(0)

</stderr_txt>
]]>

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