Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:12:56 (1918270): wrapper (7.7.26015): starting
01:12:56 (1918270): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 01:12:56] Arguments: --nthreads 12
[2026-01-09 01:12:56] Threads: 12
[2026-01-09 01:12:56] Checking for CVMFS
[2026-01-09 01:12:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 01:12:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 01:12:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 01:12:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 01:12:57] 2.11.0.0 331953 1015 94120 154925 1 253 5872199 6144000 12145 130560 0 13751075 99.999 39967 184 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-09 01:12:57] CVMFS is ok
[2026-01-09 01:12:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 01:12:57] Checking for apptainer binary...
[2026-01-09 01:12:57] apptainer is not installed, using version from CVMFS
[2026-01-09 01:12:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 01:12:57] radiat0r
[2026-01-09 01:12:57] apptainer works
[2026-01-09 01:12:57] Set ATHENA_PROC_NUMBER=12
[2026-01-09 01:12:57] Set ATHENA_CORE_NUMBER=12
[2026-01-09 01:12:57] Starting ATLAS job with PandaID=6962917476
[2026-01-09 01:12:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 02:27:25]  *** The last 200 lines of the pilot log: ***
[2026-01-09 02:27:25] 2026-01-09 02:26:23,491 | WARNING  | process 1933642 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 02:27:25] 2026-01-09 02:26:23,491 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6962917476/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 02:27:25] 2026-01-09 02:26:23,493 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6962917476/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 02:27:25] 2026-01-09 02:26:23,494 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-01-09 02:27:25] 2026-01-09 02:26:23,494 | WARNING  | maxPSS not found in memory monitor output
[2026-01-09 02:27:25] 2026-01-09 02:26:23,495 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4199648 B
[2026-01-09 02:27:25] 2026-01-09 02:26:23,495 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16076 B
[2026-01-09 02:27:25] 2026-01-09 02:26:23,496 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2026-01-09 02:27:25] 2026-01-09 02:26:23,520 | INFO     | sufficient remaining disk space (1698914369536 B)
[2026-01-09 02:27:25] 2026-01-09 02:26:23,521 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-09 02:27:25] 2026-01-09 02:26:23,523 | INFO     | size of work directory /var/lib/boinc/slots/19/PanDA_Pilot-6962917476: 4495704 B (within 4404019200 B limit)
[2026-01-09 02:27:25] 2026-01-09 02:26:23,523 | INFO     | pfn file=/var/lib/boinc/slots/19/PanDA_Pilot-6962917476/HITS.47898826._019637.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-09 02:27:25] 2026-01-09 02:26:23,523 | INFO     | total size of present files: 0 B (workdir size: 4495704 B)
[2026-01-09 02:27:25] 2026-01-09 02:26:23,523 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/19/PanDA_Pilot-6962917476/HITS.47898826._019637.pool.root.1 since it does not exist
[2026-01-09 02:27:25] 2026-01-09 02:26:24,635 | INFO     | PID=1925495 has CPU usage=25.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-09 02:27:25] 2026-01-09 02:26:24,636 | INFO     | .. there are 14 such processes running
[2026-01-09 02:27:25] 2026-01-09 02:26:24,988 | INFO     | number of running child processes to parent process 1933642: 1
[2026-01-09 02:27:25] 2026-01-09 02:26:24,988 | INFO     | maximum number of monitored processes: 6
[2026-01-09 02:27:25] 2026-01-09 02:26:25,027 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-09 02:27:25] 2026-01-09 02:26:25,132 | INFO     | job 6962917476 has state=finished
[2026-01-09 02:27:25] 2026-01-09 02:26:25,132 | INFO     | preparing for final server update for job 6962917476 in state='finished'
[2026-01-09 02:27:25] 2026-01-09 02:26:25,133 | INFO     | this job has now completed (state=finished)
[2026-01-09 02:27:25] 2026-01-09 02:26:25,133 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-09 02:27:25] 2026-01-09 02:26:25,133 | INFO     | log transfer has been attempted: DONE
[2026-01-09 02:27:25] 2026-01-09 02:26:25,133 | INFO     | job 6962917476 has finished - writing final server update
[2026-01-09 02:27:25] 2026-01-09 02:26:25,134 | INFO     | total number of processed events: 400 (read)
[2026-01-09 02:27:25] 2026-01-09 02:26:25,136 | INFO     | executing command: lscpu
[2026-01-09 02:27:25] 2026-01-09 02:26:25,312 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-09 02:27:25] 2026-01-09 02:26:25,637 | INFO     | time since job start (4393s) is within the limit (174528.0s)
[2026-01-09 02:27:25] 2026-01-09 02:26:27,491 | INFO     | monitor loop #304: job 0:6962917476 is in state 'finished'
[2026-01-09 02:27:25] 2026-01-09 02:26:27,492 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 02:27:25] 2026-01-09 02:26:27,641 | INFO     | time since job start (4395s) is within the limit (174528.0s)
[2026-01-09 02:27:25] 2026-01-09 02:26:29,644 | INFO     | time since job start (4397s) is within the limit (174528.0s)
[2026-01-09 02:27:25] 2026-01-09 02:26:29,995 | INFO     | monitor loop #305: job 0:6962917476 is in state 'finished'
[2026-01-09 02:27:25] 2026-01-09 02:26:29,995 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 02:27:25] 2026-01-09 02:26:31,650 | INFO     | time since job start (4399s) is within the limit (174528.0s)
[2026-01-09 02:27:25] 2026-01-09 02:26:31,666 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 02:27:25] 2026-01-09 02:26:31,721 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2384.379437499998
[2026-01-09 02:27:25] 2026-01-09 02:26:31,806 | INFO     | using path: /var/lib/boinc/slots/19/PanDA_Pilot-6962917476/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 02:27:25] 2026-01-09 02:26:31,806 | INFO     | extracted standard info from prmon json
[2026-01-09 02:27:25] 2026-01-09 02:26:31,807 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 02:27:25] 2026-01-09 02:26:31,807 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 02:27:25] 2026-01-09 02:26:31,807 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 02:27:25] 2026-01-09 02:26:31,807 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 02:27:25] 2026-01-09 02:26:31,809 | INFO     | fitting pss+swap vs Time
[2026-01-09 02:27:25] 2026-01-09 02:26:31,809 | INFO     | sum of square deviations: 85136480.0
[2026-01-09 02:27:25] 2026-01-09 02:26:31,809 | INFO     | sum of deviations: 674283264.0
[2026-01-09 02:27:25] 2026-01-09 02:26:31,809 | INFO     | mean x: 1767923483.0
[2026-01-09 02:27:25] 2026-01-09 02:26:31,810 | INFO     | mean y: 2667817.076923077
[2026-01-09 02:27:25] 2026-01-09 02:26:31,810 | INFO     | intersect: -13999334809.99303
[2026-01-09 02:27:25] 2026-01-09 02:26:31,810 | INFO     | chi2: 0.001929116847777982
[2026-01-09 02:27:25] 2026-01-09 02:26:31,810 | INFO     | current memory leak: 7.92 B/s (using 65 data points, chi2=0.00)
[2026-01-09 02:27:25] 2026-01-09 02:26:31,810 | INFO     | could have reported an average CPU frequency of 2413 MHz (6 samples)
[2026-01-09 02:27:25] 2026-01-09 02:26:31,810 | INFO     | ..............................
[2026-01-09 02:27:25] 2026-01-09 02:26:31,810 | INFO     | . Timing measurements:
[2026-01-09 02:27:25] 2026-01-09 02:26:31,811 | INFO     | . get job = 0 s
[2026-01-09 02:27:25] 2026-01-09 02:26:31,811 | INFO     | . initial setup = 1 s
[2026-01-09 02:27:25] 2026-01-09 02:26:31,811 | INFO     | . payload setup = 8 s
[2026-01-09 02:27:25] 2026-01-09 02:26:31,811 | INFO     | . stage-in = 0 s
[2026-01-09 02:27:25] 2026-01-09 02:26:31,811 | INFO     | . payload execution = 4356 s
[2026-01-09 02:27:25] 2026-01-09 02:26:31,811 | INFO     | . stage-out = 0 s
[2026-01-09 02:27:25] 2026-01-09 02:26:31,811 | INFO     | . log creation = 0 s
[2026-01-09 02:27:25] 2026-01-09 02:26:31,811 | INFO     | ..............................
[2026-01-09 02:27:25] 2026-01-09 02:26:32,174 | INFO     | 
[2026-01-09 02:27:25] 2026-01-09 02:26:32,175 | INFO     | job summary report
[2026-01-09 02:27:25] 2026-01-09 02:26:32,175 | INFO     | --------------------------------------------------
[2026-01-09 02:27:25] 2026-01-09 02:26:32,175 | INFO     | PanDA job id: 6962917476
[2026-01-09 02:27:25] 2026-01-09 02:26:32,175 | INFO     | task id: 47898826
[2026-01-09 02:27:25] 2026-01-09 02:26:32,175 | INFO     | errors: (none)
[2026-01-09 02:27:25] 2026-01-09 02:26:32,175 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 02:27:25] 2026-01-09 02:26:32,175 | INFO     | pilot state: finished 
[2026-01-09 02:27:25] 2026-01-09 02:26:32,176 | INFO     | transexitcode: 0
[2026-01-09 02:27:25] 2026-01-09 02:26:32,176 | INFO     | exeerrorcode: 0
[2026-01-09 02:27:25] 2026-01-09 02:26:32,176 | INFO     | exeerrordiag: 
[2026-01-09 02:27:25] 2026-01-09 02:26:32,176 | INFO     | exitcode: 0
[2026-01-09 02:27:25] 2026-01-09 02:26:32,176 | INFO     | exitmsg: OK
[2026-01-09 02:27:25] 2026-01-09 02:26:32,176 | INFO     | cpuconsumptiontime: 47012 s
[2026-01-09 02:27:25] 2026-01-09 02:26:32,176 | INFO     | nevents: 400
[2026-01-09 02:27:25] 2026-01-09 02:26:32,176 | INFO     | neventsw: 0
[2026-01-09 02:27:25] 2026-01-09 02:26:32,176 | INFO     | pid: 1933642
[2026-01-09 02:27:25] 2026-01-09 02:26:32,176 | INFO     | pgrp: 1933642
[2026-01-09 02:27:25] 2026-01-09 02:26:32,176 | INFO     | corecount: 12
[2026-01-09 02:27:25] 2026-01-09 02:26:32,177 | INFO     | event service: False
[2026-01-09 02:27:25] 2026-01-09 02:26:32,177 | INFO     | sizes: {0: 2283799, 1: 2283998, 8: 2284260, 12: 2284288, 4369: 2310450, 4370: 2310449, 4371: 2319633, 4375: 2319717, 4382: 2319911}
[2026-01-09 02:27:25] 2026-01-09 02:26:32,177 | INFO     | --------------------------------------------------
[2026-01-09 02:27:25] 2026-01-09 02:26:32,177 | INFO     | 
[2026-01-09 02:27:25] 2026-01-09 02:26:32,177 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2026-01-09 02:27:25] 2026-01-09 02:26:32,206 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,206 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,206 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,206 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,206 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,206 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,207 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,207 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,207 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,207 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,207 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,207 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,207 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,207 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,207 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,207 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,207 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,208 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 02:27:25] 2026-01-09 02:26:32,208 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,208 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 02:27:25] 2026-01-09 02:26:32,208 | INFO     | job 6962917476 has completed (purged errors)
[2026-01-09 02:27:25] 2026-01-09 02:26:32,208 | INFO     | overall cleanup function is called
[2026-01-09 02:27:25] 2026-01-09 02:26:33,218 | INFO     | --- collectZombieJob: --- 10, [1933642]
[2026-01-09 02:27:25] 2026-01-09 02:26:33,218 | INFO     | zombie collector waiting for pid 1933642
[2026-01-09 02:27:25] 2026-01-09 02:26:33,218 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 02:27:25] 2026-01-09 02:26:33,218 | INFO     | collected zombie processes
[2026-01-09 02:27:25] 2026-01-09 02:26:33,218 | INFO     | will attempt to kill all subprocesses of pid=1933642
[2026-01-09 02:27:25] 2026-01-09 02:26:34,043 | INFO     | process IDs to be killed: [1933642] (in reverse order)
[2026-01-09 02:27:25] 2026-01-09 02:26:34,314 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 02:27:25] 2026-01-09 02:26:34,314 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 02:27:25] 2026-01-09 02:26:34,344 | INFO     | did not find any defunct processes belonging to 1933642
[2026-01-09 02:27:25] 2026-01-09 02:26:34,373 | INFO     | did not find any defunct processes belonging to 1933642
[2026-01-09 02:27:25] 2026-01-09 02:26:34,373 | INFO     | ready for new job
[2026-01-09 02:27:25] 2026-01-09 02:26:34,373 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 02:27:25] 2026-01-09 02:26:34,376 | INFO     | ***************************************
[2026-01-09 02:27:25] 2026-01-09 02:26:34,376 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 02:27:25] 2026-01-09 02:26:34,376 | INFO     | ***************************************
[2026-01-09 02:27:25] 2026-01-09 02:26:34,376 | INFO     | 
[2026-01-09 02:27:25] 2026-01-09 02:26:34,413 | INFO     | architecture information:
[2026-01-09 02:27:25] 2026-01-09 02:26:34,414 | INFO     | executing command: cat /etc/os-release
[2026-01-09 02:27:25] 2026-01-09 02:26:34,437 | INFO     | cat /etc/os-release:
[2026-01-09 02:27:25] NAME="CentOS Linux"
[2026-01-09 02:27:25] VERSION="7 (Core)"
[2026-01-09 02:27:25] ID="centos"
[2026-01-09 02:27:25] ID_LIKE="rhel fedora"
[2026-01-09 02:27:25] VERSION_ID="7"
[2026-01-09 02:27:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 02:27:25] ANSI_COLOR="0;31"
[2026-01-09 02:27:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 02:27:25] HOME_URL="https://www.centos.org/"
[2026-01-09 02:27:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 02:27:25] 
[2026-01-09 02:27:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 02:27:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 02:27:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 02:27:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 02:27:25] 
[2026-01-09 02:27:25] 2026-01-09 02:26:34,437 | INFO     | ***************************************
[2026-01-09 02:27:25] 2026-01-09 02:26:34,940 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2026-01-09 02:27:25] 2026-01-09 02:26:34,965 | INFO     | sufficient remaining disk space (1698915418112 B)
[2026-01-09 02:27:25] 2026-01-09 02:26:34,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 02:27:25] 2026-01-09 02:26:34,966 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 02:27:25] 2026-01-09 02:26:34,966 | INFO     | update_server=False
[2026-01-09 02:27:25] 2026-01-09 02:26:34,966 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 02:27:25] 2026-01-09 02:26:34,966 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 02:27:25] 2026-01-09 02:26:35,000 | INFO     | all job control threads have been joined
[2026-01-09 02:27:25] 2026-01-09 02:26:35,003 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 02:27:25] 2026-01-09 02:26:35,003 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 02:27:25] 2026-01-09 02:26:35,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:27:25] 2026-01-09 02:26:35,003 | INFO     | will abort loop
[2026-01-09 02:27:25] 2026-01-09 02:26:35,325 | INFO     | all payload control threads have been joined
[2026-01-09 02:27:25] 2026-01-09 02:26:35,601 | INFO     | all data control threads have been joined
[2026-01-09 02:27:25] 2026-01-09 02:26:35,640 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 02:27:25] 2026-01-09 02:26:35,970 | INFO     | [job] retrieve thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:36,006 | INFO     | [job] control thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:36,009 | INFO     | [job] job monitor thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:36,168 | INFO     | [data] copytool_in thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:36,232 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:36,330 | INFO     | [payload] control thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:36,373 | INFO     | [job] validate thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:36,470 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:36,606 | INFO     | [data] control thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:36,730 | INFO     | [payload] failed_post thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:36,836 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:36,909 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 02:27:25] 2026-01-09 02:26:36,970 | INFO     | [data] copytool_out thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:37,090 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:37,239 | INFO     | [payload] validate_post thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:37,913 | INFO     | [job] queue monitor thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:26:39,644 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 02:27:25] 2026-01-09 02:27:05,703 | INFO     | PID=1925495 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 02:27:25] 2026-01-09 02:27:05,704 | INFO     | .. there are 14 such processes running
[2026-01-09 02:27:25] 2026-01-09 02:27:05,704 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 02:27:25] 2026-01-09 02:27:05,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 02:27:25] 2026-01-09 02:27:05,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 02:27:25] 2026-01-09 02:27:18,796 | INFO     | [monitor] cgroup control has ended
[2026-01-09 02:27:25] 2026-01-09 02:27:20,160 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140660568348480)>', '<ExcThread(monitor, started 140659843397376)>']
[2026-01-09 02:27:25] 2026-01-09 02:27:20,774 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 02:27:25] 2026-01-09 02:27:20,774 | INFO     | [monitor] control thread has ended
[2026-01-09 02:27:25] 2026-01-09 02:27:25,185 | INFO     | all workflow threads have been joined
[2026-01-09 02:27:25] 2026-01-09 02:27:25,185 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 02:27:25] 2026-01-09 02:27:25,186 | INFO     | traces error code: 0
[2026-01-09 02:27:25] 2026-01-09 02:27:25,186 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 02:27:25] 2026-01-09 02:27:25,334 [wrapper] ==== pilot stdout END ====
[2026-01-09 02:27:25] 2026-01-09 02:27:25,338 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 02:27:25] 2026-01-09 02:27:25,342 [wrapper] pilotpid: 1925495
[2026-01-09 02:27:25] 2026-01-09 02:27:25,345 [wrapper] Pilot exit status: 0
[2026-01-09 02:27:25] 2026-01-09 02:27:25,360 [wrapper] pandaids: 6962917476
[2026-01-09 02:27:25] 2026-01-09 02:27:25,533 [wrapper] cleanup supervisor_pilot 2280528 1925496
[2026-01-09 02:27:25] 2026-01-09 02:27:25,538 [wrapper] Test setup, not cleaning
[2026-01-09 02:27:25] 2026-01-09 02:27:25,542 [wrapper] apfmon messages muted
[2026-01-09 02:27:25] 2026-01-09 02:27:25,545 [wrapper] ==== wrapper stdout END ====
[2026-01-09 02:27:25] 2026-01-09 02:27:25,549 [wrapper] ==== wrapper stderr END ====
[2026-01-09 02:27:25]  *** Error codes and diagnostics ***
[2026-01-09 02:27:25]     "exeErrorCode": 0,
[2026-01-09 02:27:25]     "exeErrorDiag": "",
[2026-01-09 02:27:25]     "pilotErrorCode": 0,
[2026-01-09 02:27:25]     "pilotErrorDiag": "",
[2026-01-09 02:27:25]  *** Listing of results directory ***
[2026-01-09 02:27:25] total 436060
[2026-01-09 02:27:25] -rwx------ 1 boinc boinc     36322 Jan  8 08:06 runpilot2-wrapper.sh
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc    579449 Jan  8 08:10 pilot3.tar.gz
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc      5112 Jan  8 08:10 queuedata.json
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc       100 Jan  9 01:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 02:27:25] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 01:12 run_atlas
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc       105 Jan  9 01:12 job.xml
[2026-01-09 02:27:25] -rw-r--r-- 2 boinc boinc 223666939 Jan  9 01:12 EVNT.47898824._000648.pool.root.1
[2026-01-09 02:27:25] -rw-r--r-- 2 boinc boinc     15847 Jan  9 01:12 start_atlas.sh
[2026-01-09 02:27:25] drwxrwx--x 2 boinc boinc      4096 Jan  9 01:12 shared
[2026-01-09 02:27:25] -rw-r--r-- 2 boinc boinc    592403 Jan  9 01:12 input.tar.gz
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc      9416 Jan  9 01:12 init_data.xml
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc         0 Jan  9 01:12 boinc_setup_complete
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc         0 Jan  9 01:12 boinc_lockfile
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc      2519 Jan  9 01:12 pandaJob.out
[2026-01-09 02:27:25] -rw------- 1 boinc boinc    989837 Jan  9 01:13 agis_schedconf.cvmfs.json
[2026-01-09 02:27:25] -rw------- 1 boinc boinc   1516240 Jan  9 01:13 agis_ddmendpoints.agis.ALL.json
[2026-01-09 02:27:25] drwx------ 5 boinc boinc      4096 Jan  9 01:13 pilot3
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc       529 Jan  9 02:25 boinc_task_state.xml
[2026-01-09 02:27:25] -rw------- 1 boinc boinc 216902751 Jan  9 02:25 HITS.47898826._019637.pool.root.1
[2026-01-09 02:27:25] -rw------- 1 boinc boinc      1023 Jan  9 02:26 memory_monitor_summary.json
[2026-01-09 02:27:25] -rw------- 1 boinc boinc    382474 Jan  9 02:26 log.47898826._019637.job.log.tgz.1
[2026-01-09 02:27:25] -rw------- 1 boinc boinc        95 Jan  9 02:26 pilot_heartbeat.json
[2026-01-09 02:27:25] -rw------- 1 boinc boinc      7736 Jan  9 02:26 heartbeat.json
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc      8192 Jan  9 02:27 boinc_mmap_file
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc        27 Jan  9 02:27 wrapper_checkpoint.txt
[2026-01-09 02:27:25] -rw------- 1 boinc boinc      5013 Jan  9 02:27 pilotlog.txt
[2026-01-09 02:27:25] -rw------- 1 boinc boinc    635513 Jan  9 02:27 log.47898826._019637.job.log.1
[2026-01-09 02:27:25] -rw------- 1 boinc boinc       357 Jan  9 02:27 output.list
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc       620 Jan  9 02:27 runtime_log
[2026-01-09 02:27:25] -rw------- 1 boinc boinc   1034240 Jan  9 02:27 result.tar.gz
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc      8788 Jan  9 02:27 runtime_log.err
[2026-01-09 02:27:25] -rw------- 1 boinc boinc       644 Jan  9 02:27 OmGODmBD0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmRdeKDmJiPCvn.diag
[2026-01-09 02:27:25] -rw-r--r-- 1 boinc boinc     22317 Jan  9 02:27 stderr.txt
[2026-01-09 02:27:25] HITS file was successfully produced:
[2026-01-09 02:27:25] -rw------- 1 boinc boinc 216902751 Jan  9 02:25 shared/HITS.pool.root.1
[2026-01-09 02:27:25]  *** Contents of shared directory: ***
[2026-01-09 02:27:25] total 431864
[2026-01-09 02:27:25] -rw-r--r-- 2 boinc boinc 223666939 Jan  9 01:12 ATLAS.root_0
[2026-01-09 02:27:25] -rw-r--r-- 2 boinc boinc     15847 Jan  9 01:12 start_atlas.sh
[2026-01-09 02:27:25] -rw-r--r-- 2 boinc boinc    592403 Jan  9 01:12 input.tar.gz
[2026-01-09 02:27:25] -rw------- 1 boinc boinc 216902751 Jan  9 02:25 HITS.pool.root.1
[2026-01-09 02:27:25] -rw------- 1 boinc boinc   1034240 Jan  9 02:27 result.tar.gz
02:27:27 (1918270): run_atlas exited; CPU time 47264.157935
02:27:27 (1918270): called boinc_finish(0)

</stderr_txt>
]]>

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