Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:28:34 (15991): wrapper (7.7.26015): starting
06:28:34 (15991): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 06:28:34] Arguments: --nthreads 8
[2026-01-09 06:28:34] Threads: 8
[2026-01-09 06:28:34] Checking for CVMFS
[2026-01-09 06:28:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 06:28:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 06:28:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 06:28:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 06:28:34] 2.11.2.0 20308 34995 120492 154933 1 81 18336534 25165825 0 130560 0 16788666 99.819 10733674 2594 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 06:28:34] CVMFS is ok
[2026-01-09 06:28:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 06:28:34] Checking for apptainer binary...
[2026-01-09 06:28:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 06:28:34] Running /usr/bin/apptainer --version
[2026-01-09 06:28:34] apptainer version 1.3.2-1.el7
[2026-01-09 06:28:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 06:28:36] cg-vwn476.simple-grid.lan
[2026-01-09 06:28:36] apptainer works
[2026-01-09 06:28:36] Set ATHENA_PROC_NUMBER=8
[2026-01-09 06:28:36] Set ATHENA_CORE_NUMBER=8
[2026-01-09 06:28:36] Starting ATLAS job with PandaID=6963144126
[2026-01-09 06:28:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 09:03:16]  *** The last 200 lines of the pilot log: ***
[2026-01-09 09:03:16] 2026-01-09 08:02:05,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 09:03:16] 2026-01-09 08:02:06,883 | INFO     | time since job start (9192s) is within the limit (174528.0s)
[2026-01-09 09:03:16] 2026-01-09 08:02:07,956 | INFO     | monitor loop #628: job 0:6963144126 is in state 'finished'
[2026-01-09 09:03:16] 2026-01-09 08:02:07,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 09:03:16] 2026-01-09 08:02:08,888 | INFO     | time since job start (9194s) is within the limit (174528.0s)
[2026-01-09 09:03:16] 2026-01-09 08:02:10,459 | INFO     | monitor loop #629: job 0:6963144126 is in state 'finished'
[2026-01-09 09:03:16] 2026-01-09 08:02:10,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 09:03:16] 2026-01-09 08:02:10,893 | INFO     | time since job start (9196s) is within the limit (174528.0s)
[2026-01-09 09:03:16] 2026-01-09 08:02:11,743 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 09:03:16] 2026-01-09 08:02:11,744 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 09:03:16] 2026-01-09 08:02:11,746 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6963144126/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 09:03:16] 2026-01-09 08:02:11,747 | INFO     | extracted standard info from prmon json
[2026-01-09 09:03:16] 2026-01-09 08:02:11,747 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 09:03:16] 2026-01-09 08:02:11,747 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 09:03:16] 2026-01-09 08:02:11,747 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 09:03:16] 2026-01-09 08:02:11,748 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 09:03:16] 2026-01-09 08:02:11,751 | INFO     | fitting pss+swap vs Time
[2026-01-09 09:03:16] 2026-01-09 08:02:11,751 | INFO     | sum of square deviations: 1046484737.5
[2026-01-09 09:03:16] 2026-01-09 08:02:11,752 | INFO     | sum of deviations: -6546292866.500007
[2026-01-09 09:03:16] 2026-01-09 08:02:11,752 | INFO     | mean x: 1767941114.5
[2026-01-09 09:03:16] 2026-01-09 08:02:11,753 | INFO     | mean y: 2548291.18
[2026-01-09 09:03:16] 2026-01-09 08:02:11,753 | INFO     | intersect: 11061916757.357388
[2026-01-09 09:03:16] 2026-01-09 08:02:11,753 | INFO     | chi2: 1.6958383561587442
[2026-01-09 09:03:16] 2026-01-09 08:02:11,753 | INFO     | sum of square deviations: 945282840.0
[2026-01-09 09:03:16] 2026-01-09 08:02:11,754 | INFO     | sum of deviations: -5913133576.000005
[2026-01-09 09:03:16] 2026-01-09 08:02:11,754 | INFO     | mean x: 1767940962.0
[2026-01-09 09:03:16] 2026-01-09 08:02:11,755 | INFO     | mean y: 2549245.6344827586
[2026-01-09 09:03:16] 2026-01-09 08:02:11,755 | INFO     | intersect: 11061748270.963186
[2026-01-09 09:03:16] 2026-01-09 08:02:11,755 | INFO     | chi2: 1.6958379966193693
[2026-01-09 09:03:16] 2026-01-09 08:02:11,755 | INFO     | current chi2=1.6958379966193693 (change=2.1201276267469756e-05 %)
[2026-01-09 09:03:16] 2026-01-09 08:02:11,755 | INFO     | right removable region: 144
[2026-01-09 09:03:16] 2026-01-09 08:02:11,756 | INFO     | sum of square deviations: 945282840.0
[2026-01-09 09:03:16] 2026-01-09 08:02:11,757 | INFO     | sum of deviations: -30070245606.000004
[2026-01-09 09:03:16] 2026-01-09 08:02:11,757 | INFO     | mean x: 1767941267.0
[2026-01-09 09:03:16] 2026-01-09 08:02:11,757 | INFO     | mean y: 2583202.5655172416
[2026-01-09 09:03:16] 2026-01-09 08:02:11,757 | INFO     | intersect: 56242288258.11569
[2026-01-09 09:03:16] 2026-01-09 08:02:11,757 | INFO     | chi2: 0.14766080102775847
[2026-01-09 09:03:16] 2026-01-09 08:02:11,758 | INFO     | current chi2=0.14766080102775847 (change=91.29275496738816 %)
[2026-01-09 09:03:16] 2026-01-09 08:02:11,758 | INFO     | sum of square deviations: 850825255.0
[2026-01-09 09:03:16] 2026-01-09 08:02:11,759 | INFO     | sum of deviations: -28258144104.0
[2026-01-09 09:03:16] 2026-01-09 08:02:11,759 | INFO     | mean x: 1767941419.5
[2026-01-09 09:03:16] 2026-01-09 08:02:11,759 | INFO     | mean y: 2580210.1428571427
[2026-01-09 09:03:16] 2026-01-09 08:02:11,759 | INFO     | intersect: 58720563845.52674
[2026-01-09 09:03:16] 2026-01-09 08:02:11,759 | INFO     | chi2: 0.13563756868214358
[2026-01-09 09:03:16] 2026-01-09 08:02:11,760 | INFO     | current chi2=0.13563756868214358 (change=8.142467237025667 %)
[2026-01-09 09:03:16] 2026-01-09 08:02:11,760 | INFO     | left removable region: 20
[2026-01-09 09:03:16] 2026-01-09 08:02:11,760 | INFO     | sum of square deviations: 591173875.0
[2026-01-09 09:03:16] 2026-01-09 08:02:11,761 | INFO     | sum of deviations: -19005857352.000004
[2026-01-09 09:03:16] 2026-01-09 08:02:11,761 | INFO     | mean x: 1767941541.5
[2026-01-09 09:03:16] 2026-01-09 08:02:11,761 | INFO     | mean y: 2567615.129032258
[2026-01-09 09:03:16] 2026-01-09 08:02:11,761 | INFO     | intersect: 56840743599.1811
[2026-01-09 09:03:16] 2026-01-09 08:02:11,761 | INFO     | chi2: 0.1239828636482385
[2026-01-09 09:03:16] 2026-01-09 08:02:11,762 | INFO     | current memory leak: -32.15 B/s (using 124 data points, chi2=0.12)
[2026-01-09 09:03:16] 2026-01-09 08:02:11,762 | INFO     | could have reported an average CPU frequency of 2249 MHz (8 samples)
[2026-01-09 09:03:16] 2026-01-09 08:02:11,762 | INFO     | ..............................
[2026-01-09 09:03:16] 2026-01-09 08:02:11,762 | INFO     | . Timing measurements:
[2026-01-09 09:03:16] 2026-01-09 08:02:11,762 | INFO     | . get job = 0 s
[2026-01-09 09:03:16] 2026-01-09 08:02:11,763 | INFO     | . initial setup = 2 s
[2026-01-09 09:03:16] 2026-01-09 08:02:11,763 | INFO     | . payload setup = 9 s
[2026-01-09 09:03:16] 2026-01-09 08:02:11,763 | INFO     | . stage-in = 0 s
[2026-01-09 09:03:16] 2026-01-09 08:02:11,763 | INFO     | . payload execution = 9153 s
[2026-01-09 09:03:16] 2026-01-09 08:02:11,763 | INFO     | . stage-out = 0 s
[2026-01-09 09:03:16] 2026-01-09 08:02:11,763 | INFO     | . log creation = 0 s
[2026-01-09 09:03:16] 2026-01-09 08:02:11,763 | INFO     | ..............................
[2026-01-09 09:03:16] 2026-01-09 08:02:11,874 | INFO     | 
[2026-01-09 09:03:16] 2026-01-09 08:02:11,874 | INFO     | job summary report
[2026-01-09 09:03:16] 2026-01-09 08:02:11,874 | INFO     | --------------------------------------------------
[2026-01-09 09:03:16] 2026-01-09 08:02:11,874 | INFO     | PanDA job id: 6963144126
[2026-01-09 09:03:16] 2026-01-09 08:02:11,874 | INFO     | task id: 47898826
[2026-01-09 09:03:16] 2026-01-09 08:02:11,874 | INFO     | errors: (none)
[2026-01-09 09:03:16] 2026-01-09 08:02:11,874 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 09:03:16] 2026-01-09 08:02:11,875 | INFO     | pilot state: finished 
[2026-01-09 09:03:16] 2026-01-09 08:02:11,875 | INFO     | transexitcode: 0
[2026-01-09 09:03:16] 2026-01-09 08:02:11,875 | INFO     | exeerrorcode: 0
[2026-01-09 09:03:16] 2026-01-09 08:02:11,875 | INFO     | exeerrordiag: 
[2026-01-09 09:03:16] 2026-01-09 08:02:11,875 | INFO     | exitcode: 0
[2026-01-09 09:03:16] 2026-01-09 08:02:11,875 | INFO     | exitmsg: OK
[2026-01-09 09:03:16] 2026-01-09 08:02:11,875 | INFO     | cpuconsumptiontime: 69721 s
[2026-01-09 09:03:16] 2026-01-09 08:02:11,875 | INFO     | nevents: 400
[2026-01-09 09:03:16] 2026-01-09 08:02:11,875 | INFO     | neventsw: 0
[2026-01-09 09:03:16] 2026-01-09 08:02:11,875 | INFO     | pid: 26170
[2026-01-09 09:03:16] 2026-01-09 08:02:11,876 | INFO     | pgrp: 26170
[2026-01-09 09:03:16] 2026-01-09 08:02:11,876 | INFO     | corecount: 8
[2026-01-09 09:03:16] 2026-01-09 08:02:11,876 | INFO     | event service: False
[2026-01-09 09:03:16] 2026-01-09 08:02:11,876 | INFO     | sizes: {0: 2283969, 6: 2284231, 11: 2284259, 9166: 2312139, 9167: 2312138, 9168: 2321194, 9170: 2321378, 9180: 2321572}
[2026-01-09 09:03:16] 2026-01-09 08:02:11,876 | INFO     | --------------------------------------------------
[2026-01-09 09:03:16] 2026-01-09 08:02:11,876 | INFO     | 
[2026-01-09 09:03:16] 2026-01-09 08:02:11,876 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-09 09:03:16] 2026-01-09 08:02:11,937 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,938 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,938 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,938 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,938 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,938 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,938 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,938 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,939 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,939 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,939 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,939 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,939 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,939 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,939 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,940 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,940 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,940 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 09:03:16] 2026-01-09 08:02:11,940 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,940 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 09:03:16] 2026-01-09 08:02:11,941 | INFO     | job 6963144126 has completed (purged errors)
[2026-01-09 09:03:16] 2026-01-09 08:02:11,941 | INFO     | overall cleanup function is called
[2026-01-09 09:03:16] 2026-01-09 08:02:11,986 | INFO     | PID=19708 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 09:03:16] 2026-01-09 08:02:12,951 | INFO     | --- collectZombieJob: --- 10, [26170]
[2026-01-09 09:03:16] 2026-01-09 08:02:12,951 | INFO     | zombie collector waiting for pid 26170
[2026-01-09 09:03:16] 2026-01-09 08:02:12,951 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 09:03:16] 2026-01-09 08:02:12,951 | INFO     | collected zombie processes
[2026-01-09 09:03:16] 2026-01-09 08:02:12,951 | INFO     | will attempt to kill all subprocesses of pid=26170
[2026-01-09 09:03:16] 2026-01-09 08:02:13,013 | INFO     | process IDs to be killed: [26170] (in reverse order)
[2026-01-09 09:03:16] 2026-01-09 08:02:13,068 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 09:03:16] 2026-01-09 08:02:13,068 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 09:03:16] 2026-01-09 08:02:13,070 | INFO     | did not find any defunct processes belonging to 26170
[2026-01-09 09:03:16] 2026-01-09 08:02:13,072 | INFO     | did not find any defunct processes belonging to 26170
[2026-01-09 09:03:16] 2026-01-09 08:02:13,072 | INFO     | ready for new job
[2026-01-09 09:03:16] 2026-01-09 08:02:13,072 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 09:03:16] 2026-01-09 08:02:13,074 | INFO     | ***************************************
[2026-01-09 09:03:16] 2026-01-09 08:02:13,074 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 09:03:16] 2026-01-09 08:02:13,074 | INFO     | ***************************************
[2026-01-09 09:03:16] 2026-01-09 08:02:13,074 | INFO     | 
[2026-01-09 09:03:16] 2026-01-09 08:02:13,075 | INFO     | pilot is running in a VM
[2026-01-09 09:03:16] 2026-01-09 08:02:13,075 | INFO     | architecture information:
[2026-01-09 09:03:16] 2026-01-09 08:02:13,076 | INFO     | executing command: cat /etc/os-release
[2026-01-09 09:03:16] 2026-01-09 08:02:13,104 | INFO     | cat /etc/os-release:
[2026-01-09 09:03:16] NAME="CentOS Linux"
[2026-01-09 09:03:16] VERSION="7 (Core)"
[2026-01-09 09:03:16] ID="centos"
[2026-01-09 09:03:16] ID_LIKE="rhel fedora"
[2026-01-09 09:03:16] VERSION_ID="7"
[2026-01-09 09:03:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 09:03:16] ANSI_COLOR="0;31"
[2026-01-09 09:03:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 09:03:16] HOME_URL="https://www.centos.org/"
[2026-01-09 09:03:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 09:03:16] 
[2026-01-09 09:03:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 09:03:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 09:03:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 09:03:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 09:03:16] 
[2026-01-09 09:03:16] 2026-01-09 08:02:13,104 | INFO     | ***************************************
[2026-01-09 09:03:16] 2026-01-09 08:02:13,607 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-09 09:03:16] 2026-01-09 08:02:13,635 | INFO     | sufficient remaining disk space (498050531328 B)
[2026-01-09 09:03:16] 2026-01-09 08:02:13,635 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 09:03:16] 2026-01-09 08:02:13,635 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 09:03:16] 2026-01-09 08:02:13,635 | INFO     | update_server=False
[2026-01-09 09:03:16] 2026-01-09 08:02:13,635 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 09:03:16] 2026-01-09 08:02:13,636 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:03:16] 2026-01-09 08:02:13,637 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 09:03:16] 2026-01-09 08:02:13,669 | INFO     | all job control threads have been joined
[2026-01-09 09:03:16] 2026-01-09 08:02:13,701 | INFO     | all data control threads have been joined
[2026-01-09 09:03:16] 2026-01-09 08:02:13,795 | INFO     | all payload control threads have been joined
[2026-01-09 09:03:16] 2026-01-09 08:02:13,968 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 09:03:16] 2026-01-09 08:02:13,969 | INFO     | aborting loop
[2026-01-09 09:03:16] 2026-01-09 08:02:14,641 | INFO     | [job] retrieve thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:14,642 | INFO     | [job] queue monitor thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:14,671 | INFO     | [job] control thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:14,707 | INFO     | [data] control thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:14,801 | INFO     | [payload] control thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:14,974 | INFO     | [job] job monitor thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:15,214 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:15,319 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:15,352 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:15,501 | INFO     | [payload] validate_post thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:15,643 | INFO     | [data] copytool_out thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:15,720 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:15,788 | INFO     | [data] copytool_in thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:15,802 | INFO     | [job] validate thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:16,013 | INFO     | [payload] failed_post thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:16,942 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 09:03:16] 2026-01-09 08:02:20,949 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 09:03:16] 2026-01-09 08:02:44,073 | INFO     | PID=19708 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 09:03:16] 2026-01-09 08:02:44,074 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 09:03:16] 2026-01-09 08:02:44,074 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 09:03:16] 2026-01-09 08:02:44,074 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 09:03:16] 2026-01-09 08:03:09,190 | INFO     | [monitor] cgroup control has ended
[2026-01-09 09:03:16] 2026-01-09 08:03:10,656 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140664050591552)>', '<ExcThread(monitor, started 140663391774464)>']
[2026-01-09 09:03:16] 2026-01-09 08:03:11,213 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 09:03:16] 2026-01-09 08:03:11,214 | INFO     | [monitor] control thread has ended
[2026-01-09 09:03:16] 2026-01-09 08:03:15,682 | INFO     | all workflow threads have been joined
[2026-01-09 09:03:16] 2026-01-09 08:03:15,682 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 09:03:16] 2026-01-09 08:03:15,683 | INFO     | traces error code: 0
[2026-01-09 09:03:16] 2026-01-09 08:03:15,683 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 09:03:16] 2026-01-09 08:03:15,823 [wrapper] ==== pilot stdout END ====
[2026-01-09 09:03:16] 2026-01-09 08:03:15,827 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 09:03:16] 2026-01-09 08:03:15,832 [wrapper] pilotpid: 19708
[2026-01-09 09:03:16] 2026-01-09 08:03:15,835 [wrapper] Pilot exit status: 0
[2026-01-09 09:03:16] 2026-01-09 08:03:15,864 [wrapper] pandaids: 6963144126
[2026-01-09 09:03:16] 2026-01-09 08:03:15,911 [wrapper] cleanup supervisor_pilot 10548 19709
[2026-01-09 09:03:16] 2026-01-09 08:03:15,917 [wrapper] Test setup, not cleaning
[2026-01-09 09:03:16] 2026-01-09 08:03:15,923 [wrapper] apfmon messages muted
[2026-01-09 09:03:16] 2026-01-09 08:03:15,929 [wrapper] ==== wrapper stdout END ====
[2026-01-09 09:03:16] 2026-01-09 08:03:15,936 [wrapper] ==== wrapper stderr END ====
[2026-01-09 09:03:16]  *** Error codes and diagnostics ***
[2026-01-09 09:03:16]     "exeErrorCode": 0,
[2026-01-09 09:03:16]     "exeErrorDiag": "",
[2026-01-09 09:03:16]     "pilotErrorCode": 0,
[2026-01-09 09:03:16]     "pilotErrorDiag": "",
[2026-01-09 09:03:16]  *** Listing of results directory ***
[2026-01-09 09:03:16] total 446444
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc    579449 Jan  8 13:19 pilot3.tar.gz
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc      5112 Jan  8 13:22 queuedata.json
[2026-01-09 09:03:16] -rwx------. 1 boinc boinc     36322 Jan  8 13:22 runpilot2-wrapper.sh
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc       100 Jan  9 06:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 09:03:16] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 06:28 run_atlas
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc       105 Jan  9 06:28 job.xml
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc      6391 Jan  9 06:28 init_data.xml
[2026-01-09 09:03:16] -rw-r--r--. 2 boinc boinc 223818555 Jan  9 06:28 EVNT.47898824._001007.pool.root.1
[2026-01-09 09:03:16] -rw-r--r--. 2 boinc boinc     15847 Jan  9 06:28 start_atlas.sh
[2026-01-09 09:03:16] drwxrwx--x. 2 boinc boinc        68 Jan  9 06:28 shared
[2026-01-09 09:03:16] -rw-r--r--. 2 boinc boinc    592396 Jan  9 06:28 input.tar.gz
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc         0 Jan  9 06:28 boinc_lockfile
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc      2518 Jan  9 06:28 pandaJob.out
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc    989771 Jan  9 06:28 agis_schedconf.cvmfs.json
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc   1516240 Jan  9 06:28 agis_ddmendpoints.agis.ALL.json
[2026-01-09 09:03:16] drwx------. 5 boinc boinc      4096 Jan  9 06:28 pilot3
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc 226178647 Jan  9 09:01 HITS.47898826._025337.pool.root.1
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc       530 Jan  9 09:01 boinc_task_state.xml
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc      1015 Jan  9 09:01 memory_monitor_summary.json
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc    393221 Jan  9 09:01 log.47898826._025337.job.log.tgz.1
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc      7774 Jan  9 09:02 heartbeat.json
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc        95 Jan  9 09:02 pilot_heartbeat.json
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc      8192 Jan  9 09:03 boinc_mmap_file
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc        27 Jan  9 09:03 wrapper_checkpoint.txt
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc      4810 Jan  9 09:03 pilotlog.txt
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc   1235162 Jan  9 09:03 log.47898826._025337.job.log.1
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc       357 Jan  9 09:03 output.list
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc       620 Jan  9 09:03 runtime_log
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc   1648640 Jan  9 09:03 result.tar.gz
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc       653 Jan  9 09:03 UUVMDmbD4x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEMfKDmd5wRDn.diag
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc      8832 Jan  9 09:03 runtime_log.err
[2026-01-09 09:03:16] -rw-r--r--. 1 boinc boinc     21097 Jan  9 09:03 stderr.txt
[2026-01-09 09:03:16] HITS file was successfully produced:
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc 226178647 Jan  9 09:01 shared/HITS.pool.root.1
[2026-01-09 09:03:16]  *** Contents of shared directory: ***
[2026-01-09 09:03:16] total 441664
[2026-01-09 09:03:16] -rw-r--r--. 2 boinc boinc 223818555 Jan  9 06:28 ATLAS.root_0
[2026-01-09 09:03:16] -rw-r--r--. 2 boinc boinc     15847 Jan  9 06:28 start_atlas.sh
[2026-01-09 09:03:16] -rw-r--r--. 2 boinc boinc    592396 Jan  9 06:28 input.tar.gz
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc 226178647 Jan  9 09:01 HITS.pool.root.1
[2026-01-09 09:03:16] -rw-------. 1 boinc boinc   1648640 Jan  9 09:03 result.tar.gz
09:03:17 (15991): run_atlas exited; CPU time 69776.163976
09:03:17 (15991): called boinc_finish(0)

</stderr_txt>
]]>

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