Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:59:43 (3432087): wrapper (7.7.26015): starting
12:59:43 (3432087): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 12:59:43] Arguments: --nthreads 3
[2026-01-09 12:59:43] Threads: 3
[2026-01-09 12:59:43] Checking for CVMFS
[2026-01-09 12:59:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 12:59:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 12:59:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 12:59:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 12:59:43] 2.9.2.0 2900183 2204 81668 154942 0 57 21063218 36864001 0 130560 0 1343642 99.988 81016 4730 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 12:59:43] CVMFS is ok
[2026-01-09 12:59:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 12:59:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 12:59:43] Further information can be found at the LHC@home message board.
[2026-01-09 12:59:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 12:59:43] Checking for apptainer binary...
[2026-01-09 12:59:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 12:59:43] Running /usr/bin/apptainer --version
[2026-01-09 12:59:43] apptainer version 1.4.1-1.1
[2026-01-09 12:59:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 12:59:43] thA312a
[2026-01-09 12:59:43] apptainer works
[2026-01-09 12:59:43] Set ATHENA_PROC_NUMBER=3
[2026-01-09 12:59:43] Set ATHENA_CORE_NUMBER=3
[2026-01-09 12:59:43] Starting ATLAS job with PandaID=6963144536
[2026-01-09 12:59:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:49:04]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:49:04] 2026-01-09 13:48:12,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:49:04] 2026-01-09 13:48:12,948 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:49:04] 2026-01-09 13:48:12,948 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:49:04] 2026-01-09 13:48:12,948 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:49:04] 2026-01-09 13:48:12,948 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:49:04] 2026-01-09 13:48:12,948 | INFO     | job 6963144536 has completed (purged errors)
[2026-01-09 14:49:04] 2026-01-09 13:48:12,948 | INFO     | overall cleanup function is called
[2026-01-09 14:49:04] 2026-01-09 13:48:13,955 | INFO     | --- collectZombieJob: --- 10, [3442305]
[2026-01-09 14:49:04] 2026-01-09 13:48:13,955 | INFO     | zombie collector waiting for pid 3442305
[2026-01-09 14:49:04] 2026-01-09 13:48:13,955 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:49:04] 2026-01-09 13:48:13,955 | INFO     | collected zombie processes
[2026-01-09 14:49:04] 2026-01-09 13:48:13,955 | INFO     | will attempt to kill all subprocesses of pid=3442305
[2026-01-09 14:49:04] 2026-01-09 13:48:14,005 | INFO     | process IDs to be killed: [3442305] (in reverse order)
[2026-01-09 14:49:04] 2026-01-09 13:48:14,033 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:49:04] 2026-01-09 13:48:14,033 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:49:04] 2026-01-09 13:48:14,034 | INFO     | did not find any defunct processes belonging to 3442305
[2026-01-09 14:49:04] 2026-01-09 13:48:14,036 | INFO     | did not find any defunct processes belonging to 3442305
[2026-01-09 14:49:04] 2026-01-09 13:48:14,036 | INFO     | ready for new job
[2026-01-09 14:49:04] 2026-01-09 13:48:14,036 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:49:04] 2026-01-09 13:48:14,036 | INFO     | ***************************************
[2026-01-09 14:49:04] 2026-01-09 13:48:14,036 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:49:04] 2026-01-09 13:48:14,036 | INFO     | ***************************************
[2026-01-09 14:49:04] 2026-01-09 13:48:14,037 | INFO     | 
[2026-01-09 14:49:04] 2026-01-09 13:48:14,037 | INFO     | architecture information:
[2026-01-09 14:49:04] 2026-01-09 13:48:14,037 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:49:04] 2026-01-09 13:48:14,047 | INFO     | cat /etc/os-release:
[2026-01-09 14:49:04] NAME="CentOS Linux"
[2026-01-09 14:49:04] VERSION="7 (Core)"
[2026-01-09 14:49:04] ID="centos"
[2026-01-09 14:49:04] ID_LIKE="rhel fedora"
[2026-01-09 14:49:04] VERSION_ID="7"
[2026-01-09 14:49:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:49:04] ANSI_COLOR="0;31"
[2026-01-09 14:49:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:49:04] HOME_URL="https://www.centos.org/"
[2026-01-09 14:49:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:49:04] 
[2026-01-09 14:49:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:49:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:49:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:49:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:49:04] 
[2026-01-09 14:49:04] 2026-01-09 13:48:14,047 | INFO     | ***************************************
[2026-01-09 14:49:04] 2026-01-09 13:48:14,550 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 14:49:04] 2026-01-09 13:48:14,565 | INFO     | sufficient remaining disk space (283395489792 B)
[2026-01-09 14:49:04] 2026-01-09 13:48:14,565 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:49:04] 2026-01-09 13:48:14,565 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:49:04] 2026-01-09 13:48:14,565 | INFO     | update_server=False
[2026-01-09 14:49:04] 2026-01-09 13:48:14,565 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:49:04] 2026-01-09 13:48:14,565 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:49:04] 2026-01-09 13:48:14,565 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:49:04] 2026-01-09 13:48:14,565 | INFO     | aborting loop
[2026-01-09 14:49:04] 2026-01-09 13:48:14,565 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 14:49:04] 2026-01-09 13:48:14,566 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:49:04] 2026-01-09 13:48:14,566 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:49:04] 2026-01-09 13:48:14,566 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:49:04] 2026-01-09 13:48:15,409 | INFO     | all data control threads have been joined
[2026-01-09 14:49:04] 2026-01-09 13:48:15,571 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:15,571 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:15,571 | INFO     | all payload control threads have been joined
[2026-01-09 14:49:04] 2026-01-09 13:48:15,571 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:15,645 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:15,822 | INFO     | all job control threads have been joined
[2026-01-09 14:49:04] 2026-01-09 13:48:15,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:49:04] 2026-01-09 13:48:15,926 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:49:04] 2026-01-09 13:48:16,102 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:16,415 | INFO     | [data] control thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:16,577 | INFO     | [payload] control thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:16,709 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:16,710 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:16,827 | INFO     | [job] control thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:16,932 | INFO     | [job] validate thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:16,932 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:17,047 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:17,158 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:17,909 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:19,934 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:49:04] 2026-01-09 13:48:57,414 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:49:04] 2026-01-09 13:48:59,318 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140394435532608)>', '<ExcThread(monitor, started 140393421207296)>']
[2026-01-09 14:49:04] 2026-01-09 13:48:59,800 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:49:04] 2026-01-09 13:48:59,801 | INFO     | [monitor] control thread has ended
[2026-01-09 14:49:04] 2026-01-09 13:49:04,328 | INFO     | all workflow threads have been joined
[2026-01-09 14:49:04] 2026-01-09 13:49:04,328 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:49:04] 2026-01-09 13:49:04,328 | INFO     | traces error code: 0
[2026-01-09 14:49:04] 2026-01-09 13:49:04,328 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:49:04] 2026-01-09 13:49:04,379 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:49:04] 2026-01-09 13:49:04,382 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:49:04] 2026-01-09 13:49:04,384 [wrapper] pilotpid: 3435823
[2026-01-09 14:49:04] 2026-01-09 13:49:04,387 [wrapper] Pilot exit status: 0
[2026-01-09 14:49:04] 2026-01-09 13:49:04,395 [wrapper] pandaids: 6963144536
[2026-01-09 14:49:04] 2026-01-09 13:49:04,414 [wrapper] cleanup supervisor_pilot 3457572 3435824
[2026-01-09 14:49:04] 2026-01-09 13:49:04,417 [wrapper] Test setup, not cleaning
[2026-01-09 14:49:04] 2026-01-09 13:49:04,419 [wrapper] apfmon messages muted
[2026-01-09 14:49:04] 2026-01-09 13:49:04,421 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:49:04] 2026-01-09 13:49:04,424 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:49:04]  *** Error codes and diagnostics ***
[2026-01-09 14:49:04]     "exeErrorCode": 0,
[2026-01-09 14:49:04]     "exeErrorDiag": "",
[2026-01-09 14:49:04]     "pilotErrorCode": 0,
[2026-01-09 14:49:04]     "pilotErrorDiag": "",
[2026-01-09 14:49:04]  *** Listing of results directory ***
[2026-01-09 14:49:04] total 440700
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc    579449 Jan  8 13:19 pilot3.tar.gz
[2026-01-09 14:49:04] -rwx------ 1 boinc boinc     36322 Jan  8 13:23 runpilot2-wrapper.sh
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc      5112 Jan  8 13:24 queuedata.json
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc       100 Jan  9 12:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:49:04] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 12:59 run_atlas
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc       105 Jan  9 12:59 job.xml
[2026-01-09 14:49:04] -rw-r--r-- 2 boinc boinc 226668900 Jan  9 12:59 EVNT.47898824._001028.pool.root.1
[2026-01-09 14:49:04] -rw-r--r-- 2 boinc boinc    592395 Jan  9 12:59 input.tar.gz
[2026-01-09 14:49:04] -rw-r--r-- 2 boinc boinc     15847 Jan  9 12:59 start_atlas.sh
[2026-01-09 14:49:04] drwxrwx--x 2 boinc boinc      4096 Jan  9 12:59 shared
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc         0 Jan  9 12:59 boinc_setup_complete
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc      6447 Jan  9 12:59 init_data.xml
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc         0 Jan  9 12:59 boinc_lockfile
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc      2518 Jan  9 12:59 pandaJob.out
[2026-01-09 14:49:04] -rw------- 1 boinc boinc    989377 Jan  9 12:59 agis_schedconf.cvmfs.json
[2026-01-09 14:49:04] -rw------- 1 boinc boinc   1516240 Jan  9 12:59 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:49:04] drwx------ 5 boinc boinc      4096 Jan  9 12:59 pilot3
[2026-01-09 14:49:04] -rw------- 1 boinc boinc        95 Jan  9 14:47 pilot_heartbeat.json
[2026-01-09 14:49:04] -rw------- 1 boinc boinc 218251095 Jan  9 14:47 HITS.47898826._025663.pool.root.1
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc       529 Jan  9 14:47 boinc_task_state.xml
[2026-01-09 14:49:04] -rw------- 1 boinc boinc      1016 Jan  9 14:48 memory_monitor_summary.json
[2026-01-09 14:49:04] -rw------- 1 boinc boinc    285472 Jan  9 14:48 log.47898826._025663.job.log.tgz.1
[2026-01-09 14:49:04] -rw------- 1 boinc boinc      7755 Jan  9 14:48 heartbeat.json
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc      8192 Jan  9 14:48 boinc_mmap_file
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc        27 Jan  9 14:48 wrapper_checkpoint.txt
[2026-01-09 14:49:04] -rw------- 1 boinc boinc      4556 Jan  9 14:49 pilotlog.txt
[2026-01-09 14:49:04] -rw------- 1 boinc boinc    941409 Jan  9 14:49 log.47898826._025663.job.log.1
[2026-01-09 14:49:04] -rw------- 1 boinc boinc       357 Jan  9 14:49 output.list
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc       620 Jan  9 14:49 runtime_log
[2026-01-09 14:49:04] -rw------- 1 boinc boinc   1249280 Jan  9 14:49 result.tar.gz
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc      8902 Jan  9 14:49 runtime_log.err
[2026-01-09 14:49:04] -rw------- 1 boinc boinc       660 Jan  9 14:49 qj3LDmqD4x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmNbkKDmZ3360n.diag
[2026-01-09 14:49:04] -rw-r--r-- 1 boinc boinc     11238 Jan  9 14:49 stderr.txt
[2026-01-09 14:49:04] HITS file was successfully produced:
[2026-01-09 14:49:04] -rw------- 1 boinc boinc 218251095 Jan  9 14:47 shared/HITS.pool.root.1
[2026-01-09 14:49:04]  *** Contents of shared directory: ***
[2026-01-09 14:49:04] total 436320
[2026-01-09 14:49:04] -rw-r--r-- 2 boinc boinc 226668900 Jan  9 12:59 ATLAS.root_0
[2026-01-09 14:49:04] -rw-r--r-- 2 boinc boinc    592395 Jan  9 12:59 input.tar.gz
[2026-01-09 14:49:04] -rw-r--r-- 2 boinc boinc     15847 Jan  9 12:59 start_atlas.sh
[2026-01-09 14:49:04] -rw------- 1 boinc boinc 218251095 Jan  9 14:47 HITS.pool.root.1
[2026-01-09 14:49:04] -rw------- 1 boinc boinc   1249280 Jan  9 14:49 result.tar.gz
14:49:05 (3432087): run_atlas exited; CPU time 18772.989147
14:49:05 (3432087): called boinc_finish(0)

</stderr_txt>
]]>

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