Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:08:33 (1587): wrapper (7.7.26015): starting
18:08:33 (1587): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 18:08:33] Arguments: --nthreads 8
[2026-01-08 18:08:33] Threads: 8
[2026-01-08 18:08:33] Checking for CVMFS
[2026-01-08 18:08:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 18:08:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 18:08:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 18:08:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 18:08:34] 2.11.2.0 2910 109977 84684 154923 0 56 18670202 20275200 1 130560 0 20924583 99.750 7110718 31634 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 18:08:34] CVMFS is ok
[2026-01-08 18:08:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 18:08:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 18:08:34] Further information can be found at the LHC@home message board.
[2026-01-08 18:08:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 18:08:34] Checking for apptainer binary...
[2026-01-08 18:08:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 18:08:34] Running /usr/bin/apptainer --version
[2026-01-08 18:08:34] apptainer version 1.3.2-1.el7
[2026-01-08 18:08:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 18:08:35] c-204-13.aglt2.org
[2026-01-08 18:08:35] apptainer works
[2026-01-08 18:08:35] Set ATHENA_PROC_NUMBER=8
[2026-01-08 18:08:35] Set ATHENA_CORE_NUMBER=8
[2026-01-08 18:08:35] Starting ATLAS job with PandaID=6963144278
[2026-01-08 18:08:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 21:07:17]  *** The last 200 lines of the pilot log: ***
[2026-01-08 21:07:17] 2026-01-09 02:06:15,687 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-08 21:07:17] 2026-01-09 02:06:15,688 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-08 21:07:17] 2026-01-09 02:06:15,692 | INFO     | fitting pss+swap vs Time
[2026-01-08 21:07:17] 2026-01-09 02:06:15,692 | INFO     | sum of square deviations: 1633472487.5
[2026-01-08 21:07:17] 2026-01-09 02:06:15,693 | INFO     | sum of deviations: 29224147363.0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,693 | INFO     | mean x: 1767919042.5
[2026-01-08 21:07:17] 2026-01-09 02:06:15,693 | INFO     | mean y: 2490773.425287356
[2026-01-08 21:07:17] 2026-01-09 02:06:15,694 | INFO     | intersect: -31627014479.49
[2026-01-08 21:07:17] 2026-01-09 02:06:15,694 | INFO     | chi2: 1.409806775355848
[2026-01-08 21:07:17] 2026-01-09 02:06:15,694 | INFO     | sum of square deviations: 1496660620.0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,695 | INFO     | sum of deviations: 28391831947.999996
[2026-01-08 21:07:17] 2026-01-09 02:06:15,696 | INFO     | mean x: 1767918890.0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,696 | INFO     | mean y: 2489845.4142011832
[2026-01-08 21:07:17] 2026-01-09 02:06:15,696 | INFO     | intersect: -33535144105.67799
[2026-01-08 21:07:17] 2026-01-09 02:06:15,696 | INFO     | chi2: 1.410113817726175
[2026-01-08 21:07:17] 2026-01-09 02:06:15,696 | INFO     | current chi2=1.410113817726175 (change=-0.0217790392055223 %)
[2026-01-08 21:07:17] 2026-01-09 02:06:15,697 | INFO     | right removable region: 168
[2026-01-08 21:07:17] 2026-01-09 02:06:15,697 | INFO     | sum of square deviations: 1496660620.0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,698 | INFO     | sum of deviations: 5364165540.000001
[2026-01-08 21:07:17] 2026-01-09 02:06:15,698 | INFO     | mean x: 1767919195.0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,698 | INFO     | mean y: 2516984.6331360945
[2026-01-08 21:07:17] 2026-01-09 02:06:15,698 | INFO     | intersect: -6333863552.541379
[2026-01-08 21:07:17] 2026-01-09 02:06:15,699 | INFO     | chi2: 0.10912062462612085
[2026-01-08 21:07:17] 2026-01-09 02:06:15,699 | INFO     | current chi2=0.10912062462612085 (change=92.25988791275472 %)
[2026-01-08 21:07:17] 2026-01-09 02:06:15,699 | INFO     | sum of square deviations: 1367709365.0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,700 | INFO     | sum of deviations: 59855914.5
[2026-01-08 21:07:17] 2026-01-09 02:06:15,700 | INFO     | mean x: 1767919347.5
[2026-01-08 21:07:17] 2026-01-09 02:06:15,700 | INFO     | mean y: 2523324.75
[2026-01-08 21:07:17] 2026-01-09 02:06:15,700 | INFO     | intersect: -74847227.80657753
[2026-01-08 21:07:17] 2026-01-09 02:06:15,701 | INFO     | chi2: 0.057996811610842684
[2026-01-08 21:07:17] 2026-01-09 02:06:15,701 | INFO     | current chi2=0.057996811610842684 (change=46.850733479984456 %)
[2026-01-08 21:07:17] 2026-01-09 02:06:15,701 | INFO     | sum of square deviations: 1246386160.0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,702 | INFO     | sum of deviations: -4658696087.0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,702 | INFO     | mean x: 1767919500.0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,702 | INFO     | mean y: 2529176.8993710694
[2026-01-08 21:07:17] 2026-01-09 02:06:15,702 | INFO     | intersect: 6610593291.459979
[2026-01-08 21:07:17] 2026-01-09 02:06:15,702 | INFO     | chi2: 0.005317816728633032
[2026-01-08 21:07:17] 2026-01-09 02:06:15,703 | INFO     | current chi2=0.005317816728633032 (change=90.83084641908341 %)
[2026-01-08 21:07:17] 2026-01-09 02:06:15,703 | INFO     | sum of square deviations: 1132458442.5
[2026-01-08 21:07:17] 2026-01-09 02:06:15,704 | INFO     | sum of deviations: -5066305254.500001
[2026-01-08 21:07:17] 2026-01-09 02:06:15,704 | INFO     | mean x: 1767919652.5
[2026-01-08 21:07:17] 2026-01-09 02:06:15,704 | INFO     | mean y: 2529718.590909091
[2026-01-08 21:07:17] 2026-01-09 02:06:15,704 | INFO     | intersect: 7911712333.028935
[2026-01-08 21:07:17] 2026-01-09 02:06:15,704 | INFO     | chi2: 0.004240517273222219
[2026-01-08 21:07:17] 2026-01-09 02:06:15,704 | INFO     | current chi2=0.004240517273222219 (change=20.258303555484456 %)
[2026-01-08 21:07:17] 2026-01-09 02:06:15,705 | INFO     | left removable region: 40
[2026-01-08 21:07:17] 2026-01-09 02:06:15,705 | INFO     | sum of square deviations: 650252192.0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,705 | INFO     | sum of deviations: -3321769487.5
[2026-01-08 21:07:17] 2026-01-09 02:06:15,706 | INFO     | mean x: 1767920079.5
[2026-01-08 21:07:17] 2026-01-09 02:06:15,706 | INFO     | mean y: 2527312.5390625
[2026-01-08 21:07:17] 2026-01-09 02:06:15,706 | INFO     | intersect: 9033827858.192085
[2026-01-08 21:07:17] 2026-01-09 02:06:15,706 | INFO     | chi2: 0.0038872024159063608
[2026-01-08 21:07:17] 2026-01-09 02:06:15,706 | INFO     | current memory leak: -5.11 B/s (using 128 data points, chi2=0.00)
[2026-01-08 21:07:17] 2026-01-09 02:06:15,707 | INFO     | could have reported an average CPU frequency of 2015 MHz (9 samples)
[2026-01-08 21:07:17] 2026-01-09 02:06:15,707 | INFO     | ..............................
[2026-01-08 21:07:17] 2026-01-09 02:06:15,707 | INFO     | . Timing measurements:
[2026-01-08 21:07:17] 2026-01-09 02:06:15,707 | INFO     | . get job = 0 s
[2026-01-08 21:07:17] 2026-01-09 02:06:15,707 | INFO     | . initial setup = 2 s
[2026-01-08 21:07:17] 2026-01-09 02:06:15,707 | INFO     | . payload setup = 8 s
[2026-01-08 21:07:17] 2026-01-09 02:06:15,707 | INFO     | . stage-in = 0 s
[2026-01-08 21:07:17] 2026-01-09 02:06:15,707 | INFO     | . payload execution = 10599 s
[2026-01-08 21:07:17] 2026-01-09 02:06:15,708 | INFO     | . stage-out = 0 s
[2026-01-08 21:07:17] 2026-01-09 02:06:15,708 | INFO     | . log creation = 0 s
[2026-01-08 21:07:17] 2026-01-09 02:06:15,708 | INFO     | ..............................
[2026-01-08 21:07:17] 2026-01-09 02:06:15,803 | INFO     | 
[2026-01-08 21:07:17] 2026-01-09 02:06:15,803 | INFO     | job summary report
[2026-01-08 21:07:17] 2026-01-09 02:06:15,804 | INFO     | --------------------------------------------------
[2026-01-08 21:07:17] 2026-01-09 02:06:15,804 | INFO     | PanDA job id: 6963144278
[2026-01-08 21:07:17] 2026-01-09 02:06:15,804 | INFO     | task id: 47898826
[2026-01-08 21:07:17] 2026-01-09 02:06:15,804 | INFO     | errors: (none)
[2026-01-08 21:07:17] 2026-01-09 02:06:15,804 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 21:07:17] 2026-01-09 02:06:15,804 | INFO     | pilot state: finished 
[2026-01-08 21:07:17] 2026-01-09 02:06:15,804 | INFO     | transexitcode: 0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,805 | INFO     | exeerrorcode: 0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,805 | INFO     | exeerrordiag: 
[2026-01-08 21:07:17] 2026-01-09 02:06:15,805 | INFO     | exitcode: 0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,805 | INFO     | exitmsg: OK
[2026-01-08 21:07:17] 2026-01-09 02:06:15,805 | INFO     | cpuconsumptiontime: 78037 s
[2026-01-08 21:07:17] 2026-01-09 02:06:15,806 | INFO     | nevents: 400
[2026-01-08 21:07:17] 2026-01-09 02:06:15,806 | INFO     | neventsw: 0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,806 | INFO     | pid: 11891
[2026-01-08 21:07:17] 2026-01-09 02:06:15,806 | INFO     | pgrp: 11891
[2026-01-08 21:07:17] 2026-01-09 02:06:15,806 | INFO     | corecount: 8
[2026-01-08 21:07:17] 2026-01-09 02:06:15,806 | INFO     | event service: False
[2026-01-08 21:07:17] 2026-01-09 02:06:15,806 | INFO     | sizes: {0: 2283797, 1: 2283996, 7: 2284258, 12: 2284286, 10612: 2313231, 10613: 2313230, 10614: 2322412, 10617: 2322468, 10625: 2322726}
[2026-01-08 21:07:17] 2026-01-09 02:06:15,806 | INFO     | --------------------------------------------------
[2026-01-08 21:07:17] 2026-01-09 02:06:15,807 | INFO     | 
[2026-01-08 21:07:17] 2026-01-09 02:06:15,807 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 21:07:17] 2026-01-09 02:06:15,838 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,839 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,839 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,839 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,840 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,840 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,840 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,840 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,840 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,840 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,841 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,841 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,842 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,842 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 21:07:17] 2026-01-09 02:06:15,842 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,842 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 21:07:17] 2026-01-09 02:06:15,842 | INFO     | job 6963144278 has completed (purged errors)
[2026-01-08 21:07:17] 2026-01-09 02:06:15,843 | INFO     | overall cleanup function is called
[2026-01-08 21:07:17] 2026-01-09 02:06:16,847 | INFO     | --- collectZombieJob: --- 10, [11891]
[2026-01-08 21:07:17] 2026-01-09 02:06:16,847 | INFO     | zombie collector waiting for pid 11891
[2026-01-08 21:07:17] 2026-01-09 02:06:16,848 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 21:07:17] 2026-01-09 02:06:16,848 | INFO     | collected zombie processes
[2026-01-08 21:07:17] 2026-01-09 02:06:16,848 | INFO     | will attempt to kill all subprocesses of pid=11891
[2026-01-08 21:07:17] 2026-01-09 02:06:16,945 | INFO     | process IDs to be killed: [11891] (in reverse order)
[2026-01-08 21:07:17] 2026-01-09 02:06:17,003 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 21:07:17] 2026-01-09 02:06:17,004 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 21:07:17] 2026-01-09 02:06:17,008 | INFO     | did not find any defunct processes belonging to 11891
[2026-01-08 21:07:17] 2026-01-09 02:06:17,011 | INFO     | did not find any defunct processes belonging to 11891
[2026-01-08 21:07:17] 2026-01-09 02:06:17,011 | INFO     | ready for new job
[2026-01-08 21:07:17] 2026-01-09 02:06:17,012 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 21:07:17] 2026-01-09 02:06:17,014 | INFO     | ***************************************
[2026-01-08 21:07:17] 2026-01-09 02:06:17,014 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 21:07:17] 2026-01-09 02:06:17,015 | INFO     | ***************************************
[2026-01-08 21:07:17] 2026-01-09 02:06:17,015 | INFO     | 
[2026-01-08 21:07:17] 2026-01-09 02:06:17,015 | INFO     | architecture information:
[2026-01-08 21:07:17] 2026-01-09 02:06:17,016 | INFO     | executing command: cat /etc/os-release
[2026-01-08 21:07:17] 2026-01-09 02:06:17,036 | INFO     | cat /etc/os-release:
[2026-01-08 21:07:17] NAME="CentOS Linux"
[2026-01-08 21:07:17] VERSION="7 (Core)"
[2026-01-08 21:07:17] ID="centos"
[2026-01-08 21:07:17] ID_LIKE="rhel fedora"
[2026-01-08 21:07:17] VERSION_ID="7"
[2026-01-08 21:07:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 21:07:17] ANSI_COLOR="0;31"
[2026-01-08 21:07:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 21:07:17] HOME_URL="https://www.centos.org/"
[2026-01-08 21:07:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 21:07:17] 
[2026-01-08 21:07:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 21:07:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 21:07:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 21:07:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 21:07:17] 
[2026-01-08 21:07:17] 2026-01-09 02:06:17,037 | INFO     | ***************************************
[2026-01-08 21:07:17] 2026-01-09 02:06:17,540 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 21:07:17] 2026-01-09 02:06:17,561 | INFO     | sufficient remaining disk space (18526240768 B)
[2026-01-08 21:07:17] 2026-01-09 02:06:17,561 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 21:07:17] 2026-01-09 02:06:17,562 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 21:07:17] 2026-01-09 02:06:17,562 | INFO     | update_server=False
[2026-01-08 21:07:17] 2026-01-09 02:06:17,562 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 21:07:17] 2026-01-09 02:06:17,563 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:07:17] 2026-01-09 02:06:17,692 | INFO     | all data control threads have been joined
[2026-01-08 21:07:17] 2026-01-09 02:06:17,955 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 21:07:17] 2026-01-09 02:06:17,987 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 21:07:17] 2026-01-09 02:06:17,989 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 21:07:17] 2026-01-09 02:06:17,989 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 21:07:17] 2026-01-09 02:06:17,990 | INFO     | will abort loop
[2026-01-08 21:07:17] 2026-01-09 02:06:18,185 | INFO     | all payload control threads have been joined
[2026-01-08 21:07:17] 2026-01-09 02:06:18,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 21:07:17] 2026-01-09 02:06:18,568 | INFO     | [job] retrieve thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:18,569 | INFO     | [payload] failed_post thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:18,570 | INFO     | [job] queue monitor thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:18,697 | INFO     | [data] control thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:18,749 | INFO     | [job] validate thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:18,760 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:18,884 | INFO     | all job control threads have been joined
[2026-01-08 21:07:17] 2026-01-09 02:06:18,997 | INFO     | [job] job monitor thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:19,146 | INFO     | [payload] validate_post thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:19,191 | INFO     | [payload] control thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:19,255 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:19,311 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:19,311 | INFO     | [data] copytool_in thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:19,322 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:19,890 | INFO     | [job] control thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:20,276 | INFO     | [data] copytool_out thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:21,957 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 21:07:17] 2026-01-09 02:06:47,041 | INFO     | PID=5356 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 21:07:17] 2026-01-09 02:06:47,043 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 21:07:17] 2026-01-09 02:06:47,043 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 21:07:17] 2026-01-09 02:06:47,043 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 21:07:17] 2026-01-09 02:07:10,766 | INFO     | [monitor] cgroup control has ended
[2026-01-08 21:07:17] 2026-01-09 02:07:11,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140615223322432)>', '<ExcThread(monitor, started 140614251300608)>']
[2026-01-08 21:07:17] 2026-01-09 02:07:12,165 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 21:07:17] 2026-01-09 02:07:12,165 | INFO     | [monitor] control thread has ended
[2026-01-08 21:07:17] 2026-01-09 02:07:16,702 | INFO     | all workflow threads have been joined
[2026-01-08 21:07:17] 2026-01-09 02:07:16,702 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 21:07:17] 2026-01-09 02:07:16,703 | INFO     | traces error code: 0
[2026-01-08 21:07:17] 2026-01-09 02:07:16,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 21:07:17] 2026-01-09 02:07:16,836 [wrapper] ==== pilot stdout END ====
[2026-01-08 21:07:17] 2026-01-09 02:07:16,841 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 21:07:17] 2026-01-09 02:07:16,846 [wrapper] pilotpid: 5356
[2026-01-08 21:07:17] 2026-01-09 02:07:16,851 [wrapper] Pilot exit status: 0
[2026-01-08 21:07:17] 2026-01-09 02:07:16,871 [wrapper] pandaids: 6963144278
[2026-01-08 21:07:17] 2026-01-09 02:07:16,927 [wrapper] cleanup supervisor_pilot 18703 5357
[2026-01-08 21:07:17] 2026-01-09 02:07:16,932 [wrapper] Test setup, not cleaning
[2026-01-08 21:07:17] 2026-01-09 02:07:16,937 [wrapper] apfmon messages muted
[2026-01-08 21:07:17] 2026-01-09 02:07:16,942 [wrapper] ==== wrapper stdout END ====
[2026-01-08 21:07:17] 2026-01-09 02:07:16,946 [wrapper] ==== wrapper stderr END ====
[2026-01-08 21:07:17]  *** Error codes and diagnostics ***
[2026-01-08 21:07:17]     "exeErrorCode": 0,
[2026-01-08 21:07:17]     "exeErrorDiag": "",
[2026-01-08 21:07:17]     "pilotErrorCode": 0,
[2026-01-08 21:07:17]     "pilotErrorDiag": "",
[2026-01-08 21:07:17]  *** Listing of results directory ***
[2026-01-08 21:07:17] total 444468
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 07:19 pilot3.tar.gz
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 07:22 queuedata.json
[2026-01-08 21:07:17] -rwx------ 1 boincer umatlas     36322 Jan  8 07:23 runpilot2-wrapper.sh
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas       100 Jan  8 18:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 21:07:17] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 18:08 run_atlas
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas       105 Jan  8 18:08 job.xml
[2026-01-08 21:07:17] -rw-r--r-- 2 boincer umatlas 226155736 Jan  8 18:08 EVNT.47898824._001013.pool.root.1
[2026-01-08 21:07:17] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 18:08 start_atlas.sh
[2026-01-08 21:07:17] drwxrwx--x 2 boincer umatlas      4096 Jan  8 18:08 shared
[2026-01-08 21:07:17] -rw-r--r-- 2 boincer umatlas    592392 Jan  8 18:08 input.tar.gz
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas         0 Jan  8 18:08 boinc_lockfile
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas      2518 Jan  8 18:08 pandaJob.out
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas        57 Jan  8 18:08 setup.sh.local
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas    989837 Jan  8 18:08 agis_schedconf.cvmfs.json
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas   1516240 Jan  8 18:08 agis_ddmendpoints.agis.ALL.json
[2026-01-08 21:07:17] drwx------ 5 boincer umatlas      4096 Jan  8 18:08 pilot3
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas      5911 Jan  8 21:01 init_data.xml
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas 221269784 Jan  8 21:05 HITS.47898826._025489.pool.root.1
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas       530 Jan  8 21:05 boinc_task_state.xml
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas      1048 Jan  8 21:05 memory_monitor_summary.json
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas    420464 Jan  8 21:06 log.47898826._025489.job.log.tgz.1
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas      7847 Jan  8 21:06 heartbeat.json
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas        95 Jan  8 21:06 pilot_heartbeat.json
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas      8192 Jan  8 21:07 boinc_mmap_file
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas        28 Jan  8 21:07 wrapper_checkpoint.txt
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas      4931 Jan  8 21:07 pilotlog.txt
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas   1479557 Jan  8 21:07 log.47898826._025489.job.log.1
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas       357 Jan  8 21:07 output.list
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas       620 Jan  8 21:07 runtime_log
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas   1914880 Jan  8 21:07 result.tar.gz
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas      9343 Jan  8 21:07 runtime_log.err
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas       662 Jan  8 21:07 KK1NDmnD4x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPMfKDmGzkPTn.diag
[2026-01-08 21:07:17] -rw-r--r-- 1 boincer umatlas     20914 Jan  8 21:07 stderr.txt
[2026-01-08 21:07:17] HITS file was successfully produced:
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas 221269784 Jan  8 21:05 shared/HITS.pool.root.1
[2026-01-08 21:07:17]  *** Contents of shared directory: ***
[2026-01-08 21:07:17] total 439412
[2026-01-08 21:07:17] -rw-r--r-- 2 boincer umatlas 226155736 Jan  8 18:08 ATLAS.root_0
[2026-01-08 21:07:17] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 18:08 start_atlas.sh
[2026-01-08 21:07:17] -rw-r--r-- 2 boincer umatlas    592392 Jan  8 18:08 input.tar.gz
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas 221269784 Jan  8 21:05 HITS.pool.root.1
[2026-01-08 21:07:17] -rw------- 1 boincer umatlas   1914880 Jan  8 21:07 result.tar.gz
21:07:18 (1587): run_atlas exited; CPU time 78028.205201
21:07:18 (1587): called boinc_finish(0)

</stderr_txt>
]]>

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