Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:12:24 (1626144): wrapper (7.7.26015): starting
13:12:24 (1626144): wrapper: running run_atlas (--nthreads 2)
[2026-01-09 13:12:24] Arguments: --nthreads 2
[2026-01-09 13:12:24] Threads: 2
[2026-01-09 13:12:24] Checking for CVMFS
[2026-01-09 13:12:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 13:12:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 13:12:25] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 13:12:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 13:12:25] 2.9.2.0 1332608 1543 60628 154942 0 57 18687888 36864001 0 130560 0 761947 99.986 57526 3795 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 13:12:25] CVMFS is ok
[2026-01-09 13:12:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 13:12:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 13:12:25] Further information can be found at the LHC@home message board.
[2026-01-09 13:12:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 13:12:25] Checking for apptainer binary...
[2026-01-09 13:12:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 13:12:25] Running /usr/bin/apptainer --version
[2026-01-09 13:12:25] apptainer version 1.4.1-1.1
[2026-01-09 13:12:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 13:12:25] legendA165
[2026-01-09 13:12:25] apptainer works
[2026-01-09 13:12:25] Set ATHENA_PROC_NUMBER=2
[2026-01-09 13:12:25] Set ATHENA_CORE_NUMBER=2
[2026-01-09 13:12:25] Starting ATLAS job with PandaID=6963144331
[2026-01-09 13:12:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 16:09:15]  *** The last 200 lines of the pilot log: ***
[2026-01-09 16:09:15] 2026-01-09 15:08:38,490 | INFO     | time since job start (10562s) is within the limit (174528.0s)
[2026-01-09 16:09:15] 2026-01-09 15:08:39,959 | INFO     | monitor loop #812: job 0:6963144331 is in state 'finished'
[2026-01-09 16:09:15] 2026-01-09 15:08:39,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 16:09:15] 2026-01-09 15:08:40,495 | INFO     | time since job start (10564s) is within the limit (174528.0s)
[2026-01-09 16:09:15] 2026-01-09 15:08:41,537 | INFO     | PID=1629853 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 16:09:15] 2026-01-09 15:08:42,462 | INFO     | monitor loop #813: job 0:6963144331 is in state 'finished'
[2026-01-09 16:09:15] 2026-01-09 15:08:42,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 16:09:15] 2026-01-09 15:08:42,538 | INFO     | time since job start (10566s) is within the limit (174528.0s)
[2026-01-09 16:09:15] 2026-01-09 15:08:43,470 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 16:09:15] 2026-01-09 15:08:43,470 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 3061.7935
[2026-01-09 16:09:15] 2026-01-09 15:08:43,471 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6963144331/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 16:09:15] 2026-01-09 15:08:43,472 | INFO     | extracted standard info from prmon json
[2026-01-09 16:09:15] 2026-01-09 15:08:43,472 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 16:09:15] 2026-01-09 15:08:43,472 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 16:09:15] 2026-01-09 15:08:43,472 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 16:09:15] 2026-01-09 15:08:43,472 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 16:09:15] 2026-01-09 15:08:43,473 | INFO     | fitting pss+swap vs Time
[2026-01-09 16:09:15] 2026-01-09 15:08:43,473 | INFO     | sum of square deviations: 1605470102.0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,474 | INFO     | sum of deviations: -7576622608.0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,474 | INFO     | mean x: 1767966028.0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,474 | INFO     | mean y: 2331761.3121387283
[2026-01-09 16:09:15] 2026-01-09 15:08:43,474 | INFO     | intersect: 8345814060.505252
[2026-01-09 16:09:15] 2026-01-09 15:08:43,474 | INFO     | chi2: 1.6096917904734431
[2026-01-09 16:09:15] 2026-01-09 15:08:43,474 | INFO     | sum of square deviations: 1470248962.0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,475 | INFO     | sum of deviations: -7240930732.500005
[2026-01-09 16:09:15] 2026-01-09 15:08:43,475 | INFO     | mean x: 1767965875.5
[2026-01-09 16:09:15] 2026-01-09 15:08:43,475 | INFO     | mean y: 2332136.6726190476
[2026-01-09 16:09:15] 2026-01-09 15:08:43,475 | INFO     | intersect: 8709509473.839293
[2026-01-09 16:09:15] 2026-01-09 15:08:43,475 | INFO     | chi2: 1.6086001305246056
[2026-01-09 16:09:15] 2026-01-09 15:08:43,475 | INFO     | current chi2=1.6086001305246056 (change=0.06781794846058398 %)
[2026-01-09 16:09:15] 2026-01-09 15:08:43,475 | INFO     | right removable region: 167
[2026-01-09 16:09:15] 2026-01-09 15:08:43,475 | INFO     | sum of square deviations: 1470248962.0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,476 | INFO     | sum of deviations: -27643760918.50001
[2026-01-09 16:09:15] 2026-01-09 15:08:43,476 | INFO     | mean x: 1767966180.5
[2026-01-09 16:09:15] 2026-01-09 15:08:43,476 | INFO     | mean y: 2353970.648809524
[2026-01-09 16:09:15] 2026-01-09 15:08:43,476 | INFO     | intersect: 33243822367.43836
[2026-01-09 16:09:15] 2026-01-09 15:08:43,476 | INFO     | chi2: 0.2150555302788857
[2026-01-09 16:09:15] 2026-01-09 15:08:43,476 | INFO     | current chi2=0.2150555302788857 (change=86.6399560740983 %)
[2026-01-09 16:09:15] 2026-01-09 15:08:43,476 | INFO     | sum of square deviations: 1342841922.0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,476 | INFO     | sum of deviations: -21528360218.0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,477 | INFO     | mean x: 1767966333.0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,477 | INFO     | mean y: 2346646.355828221
[2026-01-09 16:09:15] 2026-01-09 15:08:43,477 | INFO     | intersect: 28346275627.536785
[2026-01-09 16:09:15] 2026-01-09 15:08:43,477 | INFO     | chi2: 0.19628540562563734
[2026-01-09 16:09:15] 2026-01-09 15:08:43,477 | INFO     | current chi2=0.19628540562563734 (change=8.728036255987977 %)
[2026-01-09 16:09:15] 2026-01-09 15:08:43,477 | INFO     | left removable region: 20
[2026-01-09 16:09:15] 2026-01-09 15:08:43,477 | INFO     | sum of square deviations: 984941258.0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,477 | INFO     | sum of deviations: -8064826774.999998
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | mean x: 1767966455.0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | mean y: 2329657.850340136
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | intersect: 14478668310.308159
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | chi2: 0.11791029495704543
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | current memory leak: -8.19 B/s (using 147 data points, chi2=0.12)
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | could have reported an average CPU frequency of 4402 MHz (9 samples)
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | ..............................
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | . Timing measurements:
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | . get job = 0 s
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | . initial setup = 1 s
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | . payload setup = 6 s
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | . stage-in = 0 s
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | . payload execution = 10530 s
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | . stage-out = 0 s
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | . log creation = 0 s
[2026-01-09 16:09:15] 2026-01-09 15:08:43,478 | INFO     | ..............................
[2026-01-09 16:09:15] 2026-01-09 15:08:43,513 | INFO     | 
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | job summary report
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | --------------------------------------------------
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | PanDA job id: 6963144331
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | task id: 47898826
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | errors: (none)
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | pilot state: finished 
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | transexitcode: 0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | exeerrorcode: 0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | exeerrordiag: 
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | exitcode: 0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | exitmsg: OK
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | cpuconsumptiontime: 20687 s
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | nevents: 400
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | neventsw: 0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | pid: 1636274
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | pgrp: 1636274
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | corecount: 2
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | event service: False
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | sizes: {0: 2283971, 6: 2284233, 11: 2284261, 10540: 2322377, 10550: 2322579}
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | --------------------------------------------------
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | 
[2026-01-09 16:09:15] 2026-01-09 15:08:43,514 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-01-09 16:09:15] 2026-01-09 15:08:43,524 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,524 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,524 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | job 6963144331 has completed (purged errors)
[2026-01-09 16:09:15] 2026-01-09 15:08:43,525 | INFO     | overall cleanup function is called
[2026-01-09 16:09:15] 2026-01-09 15:08:44,531 | INFO     | --- collectZombieJob: --- 10, [1636274]
[2026-01-09 16:09:15] 2026-01-09 15:08:44,531 | INFO     | zombie collector waiting for pid 1636274
[2026-01-09 16:09:15] 2026-01-09 15:08:44,532 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 16:09:15] 2026-01-09 15:08:44,532 | INFO     | collected zombie processes
[2026-01-09 16:09:15] 2026-01-09 15:08:44,532 | INFO     | will attempt to kill all subprocesses of pid=1636274
[2026-01-09 16:09:15] 2026-01-09 15:08:44,566 | INFO     | process IDs to be killed: [1636274] (in reverse order)
[2026-01-09 16:09:15] 2026-01-09 15:08:44,587 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 16:09:15] 2026-01-09 15:08:44,587 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 16:09:15] 2026-01-09 15:08:44,587 | INFO     | did not find any defunct processes belonging to 1636274
[2026-01-09 16:09:15] 2026-01-09 15:08:44,588 | INFO     | did not find any defunct processes belonging to 1636274
[2026-01-09 16:09:15] 2026-01-09 15:08:44,588 | INFO     | ready for new job
[2026-01-09 16:09:15] 2026-01-09 15:08:44,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 16:09:15] 2026-01-09 15:08:44,589 | INFO     | ***************************************
[2026-01-09 16:09:15] 2026-01-09 15:08:44,589 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 16:09:15] 2026-01-09 15:08:44,589 | INFO     | ***************************************
[2026-01-09 16:09:15] 2026-01-09 15:08:44,589 | INFO     | 
[2026-01-09 16:09:15] 2026-01-09 15:08:44,589 | INFO     | architecture information:
[2026-01-09 16:09:15] 2026-01-09 15:08:44,589 | INFO     | executing command: cat /etc/os-release
[2026-01-09 16:09:15] 2026-01-09 15:08:44,597 | INFO     | cat /etc/os-release:
[2026-01-09 16:09:15] NAME="CentOS Linux"
[2026-01-09 16:09:15] VERSION="7 (Core)"
[2026-01-09 16:09:15] ID="centos"
[2026-01-09 16:09:15] ID_LIKE="rhel fedora"
[2026-01-09 16:09:15] VERSION_ID="7"
[2026-01-09 16:09:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 16:09:15] ANSI_COLOR="0;31"
[2026-01-09 16:09:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 16:09:15] HOME_URL="https://www.centos.org/"
[2026-01-09 16:09:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 16:09:15] 
[2026-01-09 16:09:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 16:09:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 16:09:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 16:09:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 16:09:15] 
[2026-01-09 16:09:15] 2026-01-09 15:08:44,597 | INFO     | ***************************************
[2026-01-09 16:09:15] 2026-01-09 15:08:45,101 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 16:09:15] 2026-01-09 15:08:45,129 | INFO     | sufficient remaining disk space (191489900544 B)
[2026-01-09 16:09:15] 2026-01-09 15:08:45,130 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 16:09:15] 2026-01-09 15:08:45,130 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 16:09:15] 2026-01-09 15:08:45,130 | INFO     | update_server=False
[2026-01-09 16:09:15] 2026-01-09 15:08:45,130 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 16:09:15] 2026-01-09 15:08:45,131 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:09:15] 2026-01-09 15:08:45,514 | INFO     | all payload control threads have been joined
[2026-01-09 16:09:15] 2026-01-09 15:08:45,579 | INFO     | all data control threads have been joined
[2026-01-09 16:09:15] 2026-01-09 15:08:45,957 | INFO     | all job control threads have been joined
[2026-01-09 16:09:15] 2026-01-09 15:08:45,973 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 16:09:15] 2026-01-09 15:08:45,973 | INFO     | aborting loop
[2026-01-09 16:09:15] 2026-01-09 15:08:46,136 | INFO     | [job] retrieve thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:46,137 | INFO     | [job] queue monitor thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:46,325 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 16:09:15] 2026-01-09 15:08:46,520 | INFO     | [payload] control thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:46,585 | INFO     | [data] control thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:46,805 | INFO     | [data] copytool_in thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:46,824 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:46,829 | INFO     | [payload] validate_post thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:46,840 | INFO     | [job] validate thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:46,893 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:46,961 | INFO     | [job] control thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:46,979 | INFO     | [job] job monitor thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:47,021 | INFO     | [payload] failed_post thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:47,508 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:48,331 | INFO     | [data] copytool_out thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:48,347 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 16:09:15] 2026-01-09 15:08:50,540 | INFO     | [monitor] cgroup control has ended
[2026-01-09 16:09:15] 2026-01-09 15:08:52,354 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:55,708 | INFO     | job.realtimelogging is not enabled
[2026-01-09 16:09:15] 2026-01-09 15:08:56,714 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 16:09:15] 2026-01-09 15:08:58,051 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139842501863232)>', '<ExcThread(monitor, started 139841769559808)>']
[2026-01-09 16:09:15] 2026-01-09 15:09:03,077 | INFO     | all workflow threads have been joined
[2026-01-09 16:09:15] 2026-01-09 15:09:03,078 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 16:09:15] 2026-01-09 15:09:03,079 | INFO     | traces error code: 0
[2026-01-09 16:09:15] 2026-01-09 15:09:03,079 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 16:09:15] 2026-01-09 15:09:15,646 | INFO     | PID=1629853 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 16:09:15] 2026-01-09 15:09:15,646 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 16:09:15] 2026-01-09 15:09:15,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 16:09:15] 2026-01-09 15:09:15,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 16:09:15] 2026-01-09 15:09:15,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 16:09:15] 2026-01-09 15:09:15,646 | CRITICAL | thread 'MainThread' is not alive
[2026-01-09 16:09:15] 2026-01-09 15:09:15,646 | INFO     | [monitor] control thread has ended
[2026-01-09 16:09:15] 2026-01-09 15:09:15,685 [wrapper] ==== pilot stdout END ====
[2026-01-09 16:09:15] 2026-01-09 15:09:15,687 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 16:09:15] 2026-01-09 15:09:15,689 [wrapper] pilotpid: 1629853
[2026-01-09 16:09:15] 2026-01-09 15:09:15,692 [wrapper] Pilot exit status: 0
[2026-01-09 16:09:15] 2026-01-09 15:09:15,697 [wrapper] pandaids: 6963144331
[2026-01-09 16:09:15] 2026-01-09 15:09:15,710 [wrapper] cleanup supervisor_pilot 1655195 1629854
[2026-01-09 16:09:15] 2026-01-09 15:09:15,712 [wrapper] Test setup, not cleaning
[2026-01-09 16:09:15] 2026-01-09 15:09:15,714 [wrapper] apfmon messages muted
[2026-01-09 16:09:15] 2026-01-09 15:09:15,716 [wrapper] ==== wrapper stdout END ====
[2026-01-09 16:09:15] 2026-01-09 15:09:15,718 [wrapper] ==== wrapper stderr END ====
[2026-01-09 16:09:15]  *** Error codes and diagnostics ***
[2026-01-09 16:09:15]     "exeErrorCode": 0,
[2026-01-09 16:09:15]     "exeErrorDiag": "",
[2026-01-09 16:09:15]     "pilotErrorCode": 0,
[2026-01-09 16:09:15]     "pilotErrorDiag": "",
[2026-01-09 16:09:15]  *** Listing of results directory ***
[2026-01-09 16:09:15] total 445576
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc    579449 Jan  8 13:19 pilot3.tar.gz
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc      5112 Jan  8 13:19 queuedata.json
[2026-01-09 16:09:15] -rwx------ 1 boinc boinc     36322 Jan  8 13:19 runpilot2-wrapper.sh
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc       100 Jan  9 13:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 16:09:15] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 13:12 run_atlas
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc       105 Jan  9 13:12 job.xml
[2026-01-09 16:09:15] -rw-r--r-- 2 boinc boinc 228457547 Jan  9 13:12 EVNT.47898824._001015.pool.root.1
[2026-01-09 16:09:15] -rw-r--r-- 2 boinc boinc    592395 Jan  9 13:12 input.tar.gz
[2026-01-09 16:09:15] -rw-r--r-- 2 boinc boinc     15847 Jan  9 13:12 start_atlas.sh
[2026-01-09 16:09:15] drwxrwx--x 2 boinc boinc      4096 Jan  9 13:12 shared
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc         0 Jan  9 13:12 boinc_setup_complete
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc      6209 Jan  9 13:12 init_data.xml
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc         0 Jan  9 13:12 boinc_lockfile
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc      2518 Jan  9 13:12 pandaJob.out
[2026-01-09 16:09:15] -rw------- 1 boinc boinc    989377 Jan  9 13:12 agis_schedconf.cvmfs.json
[2026-01-09 16:09:15] -rw------- 1 boinc boinc   1516240 Jan  9 13:12 agis_ddmendpoints.agis.ALL.json
[2026-01-09 16:09:15] drwx------ 5 boinc boinc      4096 Jan  9 13:12 pilot3
[2026-01-09 16:09:15] -rw------- 1 boinc boinc 220232114 Jan  9 16:08 HITS.47898826._025542.pool.root.1
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc       530 Jan  9 16:08 boinc_task_state.xml
[2026-01-09 16:09:15] -rw------- 1 boinc boinc        95 Jan  9 16:08 pilot_heartbeat.json
[2026-01-09 16:09:15] -rw------- 1 boinc boinc      1016 Jan  9 16:08 memory_monitor_summary.json
[2026-01-09 16:09:15] -rw------- 1 boinc boinc    332416 Jan  9 16:08 log.47898826._025542.job.log.tgz.1
[2026-01-09 16:09:15] -rw------- 1 boinc boinc      7761 Jan  9 16:08 heartbeat.json
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc        28 Jan  9 16:09 wrapper_checkpoint.txt
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc      8192 Jan  9 16:09 boinc_mmap_file
[2026-01-09 16:09:15] -rw------- 1 boinc boinc       817 Jan  9 16:09 pilotlog.txt
[2026-01-09 16:09:15] -rw------- 1 boinc boinc   1502540 Jan  9 16:09 log.47898826._025542.job.log.1
[2026-01-09 16:09:15] -rw------- 1 boinc boinc       357 Jan  9 16:09 output.list
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc       620 Jan  9 16:09 runtime_log
[2026-01-09 16:09:15] -rw------- 1 boinc boinc   1853440 Jan  9 16:09 result.tar.gz
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc      8918 Jan  9 16:09 runtime_log.err
[2026-01-09 16:09:15] -rw------- 1 boinc boinc       666 Jan  9 16:09 G1LMDmUA4x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmgJfKDm5oauTn.diag
[2026-01-09 16:09:15] -rw-r--r-- 1 boinc boinc     21324 Jan  9 16:09 stderr.txt
[2026-01-09 16:09:15] HITS file was successfully produced:
[2026-01-09 16:09:15] -rw------- 1 boinc boinc 220232114 Jan  9 16:08 shared/HITS.pool.root.1
[2026-01-09 16:09:15]  *** Contents of shared directory: ***
[2026-01-09 16:09:15] total 440592
[2026-01-09 16:09:15] -rw-r--r-- 2 boinc boinc 228457547 Jan  9 13:12 ATLAS.root_0
[2026-01-09 16:09:15] -rw-r--r-- 2 boinc boinc    592395 Jan  9 13:12 input.tar.gz
[2026-01-09 16:09:15] -rw-r--r-- 2 boinc boinc     15847 Jan  9 13:12 start_atlas.sh
[2026-01-09 16:09:15] -rw------- 1 boinc boinc 220232114 Jan  9 16:08 HITS.pool.root.1
[2026-01-09 16:09:15] -rw------- 1 boinc boinc   1853440 Jan  9 16:09 result.tar.gz
16:09:17 (1626144): run_atlas exited; CPU time 20734.911294
16:09:17 (1626144): called boinc_finish(0)

</stderr_txt>
]]>

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