Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:07:43 (23549): wrapper (7.7.26015): starting
06:07:43 (23549): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 06:07:43] Arguments: --nthreads 8
[2026-01-09 06:07:43] Threads: 8
[2026-01-09 06:07:43] Checking for CVMFS
[2026-01-09 06:07:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 06:07:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 06:07:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 06:07:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 06:07:43] 2.11.2.0 25933 34957 118832 154931 2 57 13694009 25165824 0 130560 0 14790395 99.822 10041833 3616 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 06:07:43] CVMFS is ok
[2026-01-09 06:07:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 06:07:43] Checking for apptainer binary...
[2026-01-09 06:07:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 06:07:43] Running /usr/bin/apptainer --version
[2026-01-09 06:07:43] apptainer version 1.3.2-1.el7
[2026-01-09 06:07:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 06:07:44] cg-vwn397.simple-grid.lan
[2026-01-09 06:07:44] apptainer works
[2026-01-09 06:07:44] Set ATHENA_PROC_NUMBER=8
[2026-01-09 06:07:44] Set ATHENA_CORE_NUMBER=8
[2026-01-09 06:07:45] Starting ATLAS job with PandaID=6963079103
[2026-01-09 06:07:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 08:45:19]  *** The last 200 lines of the pilot log: ***
[2026-01-09 08:45:19] 2026-01-09 07:44:20,342 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 08:45:19] 2026-01-09 07:44:20,344 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 08:45:19] 2026-01-09 07:44:20,346 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-6963079103/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 08:45:19] 2026-01-09 07:44:20,346 | INFO     | extracted standard info from prmon json
[2026-01-09 08:45:19] 2026-01-09 07:44:20,346 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 08:45:19] 2026-01-09 07:44:20,347 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 08:45:19] 2026-01-09 07:44:20,347 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 08:45:19] 2026-01-09 07:44:20,347 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 08:45:19] 2026-01-09 07:44:20,351 | INFO     | fitting pss+swap vs Time
[2026-01-09 08:45:19] 2026-01-09 07:44:20,351 | INFO     | sum of square deviations: 1132458442.5
[2026-01-09 08:45:19] 2026-01-09 07:44:20,352 | INFO     | sum of deviations: 20187384530.0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,353 | INFO     | mean x: 1767939974.5
[2026-01-09 08:45:19] 2026-01-09 07:44:20,353 | INFO     | mean y: 2461720.3766233767
[2026-01-09 08:45:19] 2026-01-09 07:44:20,353 | INFO     | intersect: -31513117793.87111
[2026-01-09 08:45:19] 2026-01-09 07:44:20,353 | INFO     | chi2: 2.3323338719508646
[2026-01-09 08:45:19] 2026-01-09 07:44:20,354 | INFO     | sum of square deviations: 1025693650.0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,355 | INFO     | sum of deviations: 29608889674.0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,355 | INFO     | mean x: 1767939822.0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,355 | INFO     | mean y: 2474795.4832214764
[2026-01-09 08:45:19] 2026-01-09 07:44:20,355 | INFO     | intersect: -51032973400.8366
[2026-01-09 08:45:19] 2026-01-09 07:44:20,356 | INFO     | chi2: 1.559331578413851
[2026-01-09 08:45:19] 2026-01-09 07:44:20,356 | INFO     | current chi2=1.559331578413851 (change=33.14286615794166 %)
[2026-01-09 08:45:19] 2026-01-09 07:44:20,356 | INFO     | sum of square deviations: 925859220.0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,357 | INFO     | sum of deviations: 28667760659.500004
[2026-01-09 08:45:19] 2026-01-09 07:44:20,358 | INFO     | mean x: 1767939669.5
[2026-01-09 08:45:19] 2026-01-09 07:44:20,358 | INFO     | mean y: 2473357.3541666665
[2026-01-09 08:45:19] 2026-01-09 07:44:20,358 | INFO     | intersect: -54738971357.81705
[2026-01-09 08:45:19] 2026-01-09 07:44:20,358 | INFO     | chi2: 1.558952705438067
[2026-01-09 08:45:19] 2026-01-09 07:44:20,358 | INFO     | current chi2=1.558952705438067 (change=0.02429713994309559 %)
[2026-01-09 08:45:19] 2026-01-09 07:44:20,358 | INFO     | right removable region: 143
[2026-01-09 08:45:19] 2026-01-09 07:44:20,359 | INFO     | sum of square deviations: 1025693650.0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,360 | INFO     | sum of deviations: -4362003615.999998
[2026-01-09 08:45:19] 2026-01-09 07:44:20,360 | INFO     | mean x: 1767940127.0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,360 | INFO     | mean y: 2496349.2818791945
[2026-01-09 08:45:19] 2026-01-09 07:44:20,360 | INFO     | intersect: 7521077776.441437
[2026-01-09 08:45:19] 2026-01-09 07:44:20,361 | INFO     | chi2: 0.890757044609759
[2026-01-09 08:45:19] 2026-01-09 07:44:20,361 | INFO     | current chi2=0.890757044609759 (change=61.808339049473595 %)
[2026-01-09 08:45:19] 2026-01-09 07:44:20,361 | INFO     | sum of square deviations: 925859220.0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,362 | INFO     | sum of deviations: -11228618035.5
[2026-01-09 08:45:19] 2026-01-09 07:44:20,362 | INFO     | mean x: 1767940279.5
[2026-01-09 08:45:19] 2026-01-09 07:44:20,362 | INFO     | mean y: 2506793.659722222
[2026-01-09 08:45:19] 2026-01-09 07:44:20,362 | INFO     | intersect: 21443699665.380123
[2026-01-09 08:45:19] 2026-01-09 07:44:20,363 | INFO     | chi2: 0.7991501903888649
[2026-01-09 08:45:19] 2026-01-09 07:44:20,363 | INFO     | current chi2=0.7991501903888649 (change=10.284157141976586 %)
[2026-01-09 08:45:19] 2026-01-09 07:44:20,363 | INFO     | left removable region: 20
[2026-01-09 08:45:19] 2026-01-09 07:44:20,363 | INFO     | sum of square deviations: 576985702.0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,364 | INFO     | sum of deviations: -2282736754.0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,364 | INFO     | mean x: 1767940249.0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,364 | INFO     | mean y: 2524726.0162601625
[2026-01-09 08:45:19] 2026-01-09 07:44:20,365 | INFO     | intersect: 6997051923.621257
[2026-01-09 08:45:19] 2026-01-09 07:44:20,365 | INFO     | chi2: 0.0020846209044045115
[2026-01-09 08:45:19] 2026-01-09 07:44:20,365 | INFO     | current memory leak: -3.96 B/s (using 123 data points, chi2=0.00)
[2026-01-09 08:45:19] 2026-01-09 07:44:20,366 | INFO     | could have reported an average CPU frequency of 1999 MHz (8 samples)
[2026-01-09 08:45:19] 2026-01-09 07:44:20,366 | INFO     | ..............................
[2026-01-09 08:45:19] 2026-01-09 07:44:20,366 | INFO     | . Timing measurements:
[2026-01-09 08:45:19] 2026-01-09 07:44:20,366 | INFO     | . get job = 0 s
[2026-01-09 08:45:19] 2026-01-09 07:44:20,366 | INFO     | . initial setup = 2 s
[2026-01-09 08:45:19] 2026-01-09 07:44:20,366 | INFO     | . payload setup = 6 s
[2026-01-09 08:45:19] 2026-01-09 07:44:20,366 | INFO     | . stage-in = 0 s
[2026-01-09 08:45:19] 2026-01-09 07:44:20,366 | INFO     | . payload execution = 9345 s
[2026-01-09 08:45:19] 2026-01-09 07:44:20,366 | INFO     | . stage-out = 1 s
[2026-01-09 08:45:19] 2026-01-09 07:44:20,367 | INFO     | . log creation = 0 s
[2026-01-09 08:45:19] 2026-01-09 07:44:20,367 | INFO     | ..............................
[2026-01-09 08:45:19] 2026-01-09 07:44:20,483 | INFO     | 
[2026-01-09 08:45:19] 2026-01-09 07:44:20,483 | INFO     | job summary report
[2026-01-09 08:45:19] 2026-01-09 07:44:20,483 | INFO     | --------------------------------------------------
[2026-01-09 08:45:19] 2026-01-09 07:44:20,483 | INFO     | PanDA job id: 6963079103
[2026-01-09 08:45:19] 2026-01-09 07:44:20,484 | INFO     | task id: 47898826
[2026-01-09 08:45:19] 2026-01-09 07:44:20,484 | INFO     | errors: (none)
[2026-01-09 08:45:19] 2026-01-09 07:44:20,484 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 08:45:19] 2026-01-09 07:44:20,484 | INFO     | pilot state: finished 
[2026-01-09 08:45:19] 2026-01-09 07:44:20,484 | INFO     | transexitcode: 0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,484 | INFO     | exeerrorcode: 0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,484 | INFO     | exeerrordiag: 
[2026-01-09 08:45:19] 2026-01-09 07:44:20,484 | INFO     | exitcode: 0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,484 | INFO     | exitmsg: OK
[2026-01-09 08:45:19] 2026-01-09 07:44:20,484 | INFO     | cpuconsumptiontime: 69169 s
[2026-01-09 08:45:19] 2026-01-09 07:44:20,485 | INFO     | nevents: 400
[2026-01-09 08:45:19] 2026-01-09 07:44:20,485 | INFO     | neventsw: 0
[2026-01-09 08:45:19] 2026-01-09 07:44:20,485 | INFO     | pid: 1337
[2026-01-09 08:45:19] 2026-01-09 07:44:20,485 | INFO     | pgrp: 1337
[2026-01-09 08:45:19] 2026-01-09 07:44:20,485 | INFO     | corecount: 8
[2026-01-09 08:45:19] 2026-01-09 07:44:20,485 | INFO     | event service: False
[2026-01-09 08:45:19] 2026-01-09 07:44:20,485 | INFO     | sizes: {0: 2283740, 1: 2283995, 6: 2284257, 12: 2284285, 9355: 2312250, 9356: 2312249, 9357: 2321431, 9360: 2321487, 9366: 2321681}
[2026-01-09 08:45:19] 2026-01-09 07:44:20,485 | INFO     | --------------------------------------------------
[2026-01-09 08:45:19] 2026-01-09 07:44:20,485 | INFO     | 
[2026-01-09 08:45:19] 2026-01-09 07:44:20,485 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-01-09 08:45:19] 2026-01-09 07:44:20,508 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,509 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,509 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,509 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,509 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,509 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,509 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,509 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,509 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,509 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,510 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,510 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,510 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,510 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,510 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,510 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,510 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,510 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 08:45:19] 2026-01-09 07:44:20,510 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,511 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 08:45:19] 2026-01-09 07:44:20,511 | INFO     | job 6963079103 has completed (purged errors)
[2026-01-09 08:45:19] 2026-01-09 07:44:20,511 | INFO     | overall cleanup function is called
[2026-01-09 08:45:19] 2026-01-09 07:44:21,519 | INFO     | --- collectZombieJob: --- 10, [1337]
[2026-01-09 08:45:19] 2026-01-09 07:44:21,519 | INFO     | zombie collector waiting for pid 1337
[2026-01-09 08:45:19] 2026-01-09 07:44:21,519 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 08:45:19] 2026-01-09 07:44:21,520 | INFO     | collected zombie processes
[2026-01-09 08:45:19] 2026-01-09 07:44:21,520 | INFO     | will attempt to kill all subprocesses of pid=1337
[2026-01-09 08:45:19] 2026-01-09 07:44:21,583 | INFO     | process IDs to be killed: [1337] (in reverse order)
[2026-01-09 08:45:19] 2026-01-09 07:44:21,636 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 08:45:19] 2026-01-09 07:44:21,636 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 08:45:19] 2026-01-09 07:44:21,638 | INFO     | did not find any defunct processes belonging to 1337
[2026-01-09 08:45:19] 2026-01-09 07:44:21,640 | INFO     | did not find any defunct processes belonging to 1337
[2026-01-09 08:45:19] 2026-01-09 07:44:21,640 | INFO     | ready for new job
[2026-01-09 08:45:19] 2026-01-09 07:44:21,640 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 08:45:19] 2026-01-09 07:44:21,642 | INFO     | ***************************************
[2026-01-09 08:45:19] 2026-01-09 07:44:21,642 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 08:45:19] 2026-01-09 07:44:21,642 | INFO     | ***************************************
[2026-01-09 08:45:19] 2026-01-09 07:44:21,642 | INFO     | 
[2026-01-09 08:45:19] 2026-01-09 07:44:21,643 | INFO     | pilot is running in a VM
[2026-01-09 08:45:19] 2026-01-09 07:44:21,643 | INFO     | architecture information:
[2026-01-09 08:45:19] 2026-01-09 07:44:21,644 | INFO     | executing command: cat /etc/os-release
[2026-01-09 08:45:19] 2026-01-09 07:44:21,665 | INFO     | cat /etc/os-release:
[2026-01-09 08:45:19] NAME="CentOS Linux"
[2026-01-09 08:45:19] VERSION="7 (Core)"
[2026-01-09 08:45:19] ID="centos"
[2026-01-09 08:45:19] ID_LIKE="rhel fedora"
[2026-01-09 08:45:19] VERSION_ID="7"
[2026-01-09 08:45:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 08:45:19] ANSI_COLOR="0;31"
[2026-01-09 08:45:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 08:45:19] HOME_URL="https://www.centos.org/"
[2026-01-09 08:45:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 08:45:19] 
[2026-01-09 08:45:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 08:45:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 08:45:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 08:45:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 08:45:19] 
[2026-01-09 08:45:19] 2026-01-09 07:44:21,665 | INFO     | ***************************************
[2026-01-09 08:45:19] 2026-01-09 07:44:22,168 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-01-09 08:45:19] 2026-01-09 07:44:22,190 | INFO     | sufficient remaining disk space (498116591616 B)
[2026-01-09 08:45:19] 2026-01-09 07:44:22,191 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 08:45:19] 2026-01-09 07:44:22,191 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 08:45:19] 2026-01-09 07:44:22,191 | INFO     | update_server=False
[2026-01-09 08:45:19] 2026-01-09 07:44:22,191 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 08:45:19] 2026-01-09 07:44:22,192 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:45:19] 2026-01-09 07:44:22,192 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 08:45:19] 2026-01-09 07:44:22,288 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 08:45:19] 2026-01-09 07:44:22,288 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 08:45:19] 2026-01-09 07:44:22,288 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:45:19] 2026-01-09 07:44:22,288 | INFO     | will abort loop
[2026-01-09 08:45:19] 2026-01-09 07:44:22,437 | INFO     | all data control threads have been joined
[2026-01-09 08:45:19] 2026-01-09 07:44:22,477 | INFO     | all job control threads have been joined
[2026-01-09 08:45:19] 2026-01-09 07:44:22,578 | INFO     | all payload control threads have been joined
[2026-01-09 08:45:19] 2026-01-09 07:44:23,197 | INFO     | [job] retrieve thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:23,197 | INFO     | [job] queue monitor thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:23,252 | INFO     | [data] copytool_in thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:23,294 | INFO     | [job] job monitor thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:23,443 | INFO     | [data] control thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:23,483 | INFO     | [job] control thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:23,584 | INFO     | [payload] control thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:23,689 | INFO     | [payload] failed_post thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:23,790 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:23,999 | INFO     | [payload] validate_post thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:24,155 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:24,198 | INFO     | [data] copytool_out thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:24,294 | INFO     | [job] validate thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:24,313 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:24,593 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:25,162 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 08:45:19] 2026-01-09 07:44:29,169 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 08:45:19] 2026-01-09 07:44:52,235 | INFO     | PID=27314 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 08:45:19] 2026-01-09 07:44:52,236 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 08:45:19] 2026-01-09 07:44:52,236 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 08:45:19] 2026-01-09 07:44:52,236 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 08:45:19] 2026-01-09 07:45:13,894 | INFO     | [monitor] cgroup control has ended
[2026-01-09 08:45:19] 2026-01-09 07:45:14,523 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140325327329088)>', '<ExcThread(monitor, started 140324886271744)>']
[2026-01-09 08:45:19] 2026-01-09 07:45:15,339 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 08:45:19] 2026-01-09 07:45:15,339 | INFO     | [monitor] control thread has ended
[2026-01-09 08:45:19] 2026-01-09 07:45:19,548 | INFO     | all workflow threads have been joined
[2026-01-09 08:45:19] 2026-01-09 07:45:19,549 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 08:45:19] 2026-01-09 07:45:19,549 | INFO     | traces error code: 0
[2026-01-09 08:45:19] 2026-01-09 07:45:19,549 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 08:45:19] 2026-01-09 07:45:19,693 [wrapper] ==== pilot stdout END ====
[2026-01-09 08:45:19] 2026-01-09 07:45:19,697 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 08:45:19] 2026-01-09 07:45:19,702 [wrapper] pilotpid: 27314
[2026-01-09 08:45:19] 2026-01-09 07:45:19,709 [wrapper] Pilot exit status: 0
[2026-01-09 08:45:19] 2026-01-09 07:45:19,726 [wrapper] pandaids: 6963079103
[2026-01-09 08:45:19] 2026-01-09 07:45:19,763 [wrapper] cleanup supervisor_pilot 18091 27315
[2026-01-09 08:45:19] 2026-01-09 07:45:19,767 [wrapper] Test setup, not cleaning
[2026-01-09 08:45:19] 2026-01-09 07:45:19,772 [wrapper] apfmon messages muted
[2026-01-09 08:45:19] 2026-01-09 07:45:19,775 [wrapper] ==== wrapper stdout END ====
[2026-01-09 08:45:19] 2026-01-09 07:45:19,778 [wrapper] ==== wrapper stderr END ====
[2026-01-09 08:45:19]  *** Error codes and diagnostics ***
[2026-01-09 08:45:19]     "exeErrorCode": 0,
[2026-01-09 08:45:19]     "exeErrorDiag": "",
[2026-01-09 08:45:19]     "pilotErrorCode": 0,
[2026-01-09 08:45:19]     "pilotErrorDiag": "",
[2026-01-09 08:45:19]  *** Listing of results directory ***
[2026-01-09 08:45:19] total 441380
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc    579449 Jan  8 12:09 pilot3.tar.gz
[2026-01-09 08:45:19] -rwx------. 1 boinc boinc     36322 Jan  8 12:10 runpilot2-wrapper.sh
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc      5112 Jan  8 12:14 queuedata.json
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc       100 Jan  9 06:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 08:45:19] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 06:07 run_atlas
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc       105 Jan  9 06:07 job.xml
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc      6390 Jan  9 06:07 init_data.xml
[2026-01-09 08:45:19] -rw-r--r--. 2 boinc boinc 225032733 Jan  9 06:07 EVNT.47898824._000979.pool.root.1
[2026-01-09 08:45:19] -rw-r--r--. 2 boinc boinc     15847 Jan  9 06:07 start_atlas.sh
[2026-01-09 08:45:19] drwxrwx--x. 2 boinc boinc        68 Jan  9 06:07 shared
[2026-01-09 08:45:19] -rw-r--r--. 2 boinc boinc    592402 Jan  9 06:07 input.tar.gz
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc         0 Jan  9 06:07 boinc_lockfile
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc      2518 Jan  9 06:07 pandaJob.out
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc    989771 Jan  9 06:07 agis_schedconf.cvmfs.json
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc   1516240 Jan  9 06:07 agis_ddmendpoints.agis.ALL.json
[2026-01-09 08:45:19] drwx------. 5 boinc boinc      4096 Jan  9 06:07 pilot3
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc 219767999 Jan  9 08:43 HITS.47898826._024853.pool.root.1
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc       530 Jan  9 08:43 boinc_task_state.xml
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc      1023 Jan  9 08:44 memory_monitor_summary.json
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc    375317 Jan  9 08:44 log.47898826._024853.job.log.tgz.1
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc      7766 Jan  9 08:44 heartbeat.json
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc      8192 Jan  9 08:44 boinc_mmap_file
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc        27 Jan  9 08:44 wrapper_checkpoint.txt
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc        95 Jan  9 08:44 pilot_heartbeat.json
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc      4995 Jan  9 08:45 pilotlog.txt
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc   1260260 Jan  9 08:45 log.47898826._024853.job.log.1
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc       357 Jan  9 08:45 output.list
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc       620 Jan  9 08:45 runtime_log
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc   1658880 Jan  9 08:45 result.tar.gz
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc      8816 Jan  9 08:45 runtime_log.err
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc       653 Jan  9 08:45 5pOKDmv52x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPDfKDmepXg1n.diag
[2026-01-09 08:45:19] -rw-r--r--. 1 boinc boinc     20729 Jan  9 08:45 stderr.txt
[2026-01-09 08:45:19] HITS file was successfully produced:
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc 219767999 Jan  9 08:43 shared/HITS.pool.root.1
[2026-01-09 08:45:19]  *** Contents of shared directory: ***
[2026-01-09 08:45:19] total 436596
[2026-01-09 08:45:19] -rw-r--r--. 2 boinc boinc 225032733 Jan  9 06:07 ATLAS.root_0
[2026-01-09 08:45:19] -rw-r--r--. 2 boinc boinc     15847 Jan  9 06:07 start_atlas.sh
[2026-01-09 08:45:19] -rw-r--r--. 2 boinc boinc    592402 Jan  9 06:07 input.tar.gz
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc 219767999 Jan  9 08:43 HITS.pool.root.1
[2026-01-09 08:45:19] -rw-------. 1 boinc boinc   1658880 Jan  9 08:45 result.tar.gz
08:45:21 (23549): run_atlas exited; CPU time 69231.685079
08:45:21 (23549): called boinc_finish(0)

</stderr_txt>
]]>

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