Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:29:39 (6173): wrapper (7.7.26015): starting
05:29:39 (6173): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 05:29:39] Arguments: --nthreads 8
[2026-01-09 05:29:39] Threads: 8
[2026-01-09 05:29:39] Checking for CVMFS
[2026-01-09 05:29:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 05:29:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 05:29:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 05:29:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 05:29:40] 2.11.2.0 13921 34919 101916 154931 2 60 21054662 25165824 0 130560 0 15930391 99.839 9385371 4169 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 05:29:40] CVMFS is ok
[2026-01-09 05:29:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 05:29:40] Checking for apptainer binary...
[2026-01-09 05:29:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 05:29:40] Running /usr/bin/apptainer --version
[2026-01-09 05:29:40] apptainer version 1.3.2-1.el7
[2026-01-09 05:29:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 05:29:41] cg-vwn367.simple-grid.lan
[2026-01-09 05:29:41] apptainer works
[2026-01-09 05:29:41] Set ATHENA_PROC_NUMBER=8
[2026-01-09 05:29:41] Set ATHENA_CORE_NUMBER=8
[2026-01-09 05:29:41] Starting ATLAS job with PandaID=6963076865
[2026-01-09 05:29:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 11:39:41]  *** The last 200 lines of the pilot log: ***
[2026-01-09 11:39:41] 2026-01-09 10:38:36,544 | INFO     | time since job start (22120s) is within the limit (174528.0s)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,550 | INFO     | time since job start (22122s) is within the limit (174528.0s)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,656 | INFO     | monitor loop #1490: job 0:6963076865 is in state 'finished'
[2026-01-09 11:39:41] 2026-01-09 10:38:38,657 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,677 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 11:39:41] 2026-01-09 10:38:38,678 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-09 11:39:41] 2026-01-09 10:38:38,679 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6963076865/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,680 | INFO     | extracted standard info from prmon json
[2026-01-09 11:39:41] 2026-01-09 10:38:38,680 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 11:39:41] 2026-01-09 10:38:38,680 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 11:39:41] 2026-01-09 10:38:38,687 | INFO     | fitting pss+swap vs Time
[2026-01-09 11:39:41] 2026-01-09 10:38:38,688 | INFO     | sum of square deviations: 14709657879.778965
[2026-01-09 11:39:41] 2026-01-09 10:38:38,692 | INFO     | sum of deviations: 158096974705.23233
[2026-01-09 11:39:41] 2026-01-09 10:38:38,692 | INFO     | mean x: 1767944040.7016575
[2026-01-09 11:39:41] 2026-01-09 10:38:38,692 | INFO     | mean y: 2747804.1132596685
[2026-01-09 11:39:41] 2026-01-09 10:38:38,692 | INFO     | intersect: -18998822903.20466
[2026-01-09 11:39:41] 2026-01-09 10:38:38,693 | INFO     | chi2: 4.958986835797303
[2026-01-09 11:39:41] 2026-01-09 10:38:38,693 | INFO     | sum of square deviations: 14108543292.072784
[2026-01-09 11:39:41] 2026-01-09 10:38:38,697 | INFO     | sum of deviations: 254258790055.76453
[2026-01-09 11:39:41] 2026-01-09 10:38:38,697 | INFO     | mean x: 1767943888.2044818
[2026-01-09 11:39:41] 2026-01-09 10:38:38,697 | INFO     | mean y: 2772145.6470588236
[2026-01-09 11:39:41] 2026-01-09 10:38:38,698 | INFO     | intersect: -31858438795.52261
[2026-01-09 11:39:41] 2026-01-09 10:38:38,698 | INFO     | chi2: 2.5010975387383576
[2026-01-09 11:39:41] 2026-01-09 10:38:38,698 | INFO     | current chi2=2.5010975387383576 (change=49.56434405746446 %)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,699 | INFO     | sum of square deviations: 13524033666.86086
[2026-01-09 11:39:41] 2026-01-09 10:38:38,703 | INFO     | sum of deviations: 266682046544.72418
[2026-01-09 11:39:41] 2026-01-09 10:38:38,703 | INFO     | mean x: 1767943735.7073863
[2026-01-09 11:39:41] 2026-01-09 10:38:38,703 | INFO     | mean y: 2775355.2982954546
[2026-01-09 11:39:41] 2026-01-09 10:38:38,703 | INFO     | intersect: -34859519817.012405
[2026-01-09 11:39:41] 2026-01-09 10:38:38,704 | INFO     | chi2: 2.364173327258116
[2026-01-09 11:39:41] 2026-01-09 10:38:38,704 | INFO     | current chi2=2.364173327258116 (change=5.474565040326706 %)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,704 | INFO     | right removable region: 351
[2026-01-09 11:39:41] 2026-01-09 10:38:38,704 | INFO     | sum of square deviations: 14108498762.072775
[2026-01-09 11:39:41] 2026-01-09 10:38:38,708 | INFO     | sum of deviations: 59475916736.47894
[2026-01-09 11:39:41] 2026-01-09 10:38:38,708 | INFO     | mean x: 1767944193.2044818
[2026-01-09 11:39:41] 2026-01-09 10:38:38,709 | INFO     | mean y: 2772762.0756302522
[2026-01-09 11:39:41] 2026-01-09 10:38:38,709 | INFO     | intersect: -7450188988.358184
[2026-01-09 11:39:41] 2026-01-09 10:38:38,709 | INFO     | chi2: 2.6916700168382386
[2026-01-09 11:39:41] 2026-01-09 10:38:38,709 | INFO     | current chi2=2.6916700168382386 (change=45.721372006718106 %)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,710 | INFO     | sum of square deviations: 13523944606.86086
[2026-01-09 11:39:41] 2026-01-09 10:38:38,714 | INFO     | sum of deviations: 43447283459.66191
[2026-01-09 11:39:41] 2026-01-09 10:38:38,714 | INFO     | mean x: 1767944345.7073863
[2026-01-09 11:39:41] 2026-01-09 10:38:38,714 | INFO     | mean y: 2776938.8607954546
[2026-01-09 11:39:41] 2026-01-09 10:38:38,714 | INFO     | intersect: -5676954926.492119
[2026-01-09 11:39:41] 2026-01-09 10:38:38,715 | INFO     | chi2: 2.6592073012315622
[2026-01-09 11:39:41] 2026-01-09 10:38:38,715 | INFO     | current chi2=2.6592073012315622 (change=1.2060436607607856 %)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,715 | INFO     | left removable region: 20
[2026-01-09 11:39:41] 2026-01-09 10:38:38,716 | INFO     | sum of square deviations: 11245054693.196323
[2026-01-09 11:39:41] 2026-01-09 10:38:38,719 | INFO     | sum of deviations: 135431229750.4622
[2026-01-09 11:39:41] 2026-01-09 10:38:38,719 | INFO     | mean x: 1767944315.2114804
[2026-01-09 11:39:41] 2026-01-09 10:38:38,719 | INFO     | mean y: 2810399.0362537764
[2026-01-09 11:39:41] 2026-01-09 10:38:38,720 | INFO     | intersect: -21289649199.608166
[2026-01-09 11:39:41] 2026-01-09 10:38:38,720 | INFO     | chi2: 0.026265634526685084
[2026-01-09 11:39:41] 2026-01-09 10:38:38,720 | INFO     | current memory leak: 12.04 B/s (using 331 data points, chi2=0.03)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,721 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,721 | INFO     | ..............................
[2026-01-09 11:39:41] 2026-01-09 10:38:38,721 | INFO     | . Timing measurements:
[2026-01-09 11:39:41] 2026-01-09 10:38:38,721 | INFO     | . get job = 0 s
[2026-01-09 11:39:41] 2026-01-09 10:38:38,722 | INFO     | . initial setup = 1 s
[2026-01-09 11:39:41] 2026-01-09 10:38:38,722 | INFO     | . payload setup = 8 s
[2026-01-09 11:39:41] 2026-01-09 10:38:38,722 | INFO     | . stage-in = 0 s
[2026-01-09 11:39:41] 2026-01-09 10:38:38,722 | INFO     | . payload execution = 22082 s
[2026-01-09 11:39:41] 2026-01-09 10:38:38,722 | INFO     | . stage-out = 1 s
[2026-01-09 11:39:41] 2026-01-09 10:38:38,722 | INFO     | . log creation = 0 s
[2026-01-09 11:39:41] 2026-01-09 10:38:38,722 | INFO     | ..............................
[2026-01-09 11:39:41] 2026-01-09 10:38:38,837 | INFO     | 
[2026-01-09 11:39:41] 2026-01-09 10:38:38,837 | INFO     | job summary report
[2026-01-09 11:39:41] 2026-01-09 10:38:38,837 | INFO     | --------------------------------------------------
[2026-01-09 11:39:41] 2026-01-09 10:38:38,837 | INFO     | PanDA job id: 6963076865
[2026-01-09 11:39:41] 2026-01-09 10:38:38,837 | INFO     | task id: 47962010
[2026-01-09 11:39:41] 2026-01-09 10:38:38,838 | INFO     | errors: (none)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,838 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 11:39:41] 2026-01-09 10:38:38,838 | INFO     | pilot state: finished 
[2026-01-09 11:39:41] 2026-01-09 10:38:38,838 | INFO     | transexitcode: 0
[2026-01-09 11:39:41] 2026-01-09 10:38:38,838 | INFO     | exeerrorcode: 0
[2026-01-09 11:39:41] 2026-01-09 10:38:38,838 | INFO     | exeerrordiag: 
[2026-01-09 11:39:41] 2026-01-09 10:38:38,838 | INFO     | exitcode: 0
[2026-01-09 11:39:41] 2026-01-09 10:38:38,838 | INFO     | exitmsg: OK
[2026-01-09 11:39:41] 2026-01-09 10:38:38,838 | INFO     | cpuconsumptiontime: 170888 s
[2026-01-09 11:39:41] 2026-01-09 10:38:38,839 | INFO     | nevents: 450
[2026-01-09 11:39:41] 2026-01-09 10:38:38,839 | INFO     | neventsw: 0
[2026-01-09 11:39:41] 2026-01-09 10:38:38,839 | INFO     | pid: 16361
[2026-01-09 11:39:41] 2026-01-09 10:38:38,839 | INFO     | pgrp: 16361
[2026-01-09 11:39:41] 2026-01-09 10:38:38,839 | INFO     | corecount: 8
[2026-01-09 11:39:41] 2026-01-09 10:38:38,839 | INFO     | event service: False
[2026-01-09 11:39:41] 2026-01-09 10:38:38,839 | INFO     | sizes: {0: 2284448, 1: 2284647, 6: 2284909, 12: 2284937, 22094: 2319476, 22095: 2319475, 22097: 2328653, 22099: 2328709, 22105: 2328955}
[2026-01-09 11:39:41] 2026-01-09 10:38:38,839 | INFO     | --------------------------------------------------
[2026-01-09 11:39:41] 2026-01-09 10:38:38,839 | INFO     | 
[2026-01-09 11:39:41] 2026-01-09 10:38:38,840 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-09 11:39:41] 2026-01-09 10:38:38,863 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,864 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,864 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,864 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,864 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,864 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,864 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,864 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,864 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,865 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,865 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,865 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,865 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,865 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,865 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,865 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,865 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,865 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,866 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,866 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 11:39:41] 2026-01-09 10:38:38,866 | INFO     | job 6963076865 has completed (purged errors)
[2026-01-09 11:39:41] 2026-01-09 10:38:38,866 | INFO     | overall cleanup function is called
[2026-01-09 11:39:41] 2026-01-09 10:38:39,881 | INFO     | --- collectZombieJob: --- 10, [16361]
[2026-01-09 11:39:41] 2026-01-09 10:38:39,882 | INFO     | zombie collector waiting for pid 16361
[2026-01-09 11:39:41] 2026-01-09 10:38:39,882 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 11:39:41] 2026-01-09 10:38:39,882 | INFO     | collected zombie processes
[2026-01-09 11:39:41] 2026-01-09 10:38:39,882 | INFO     | will attempt to kill all subprocesses of pid=16361
[2026-01-09 11:39:41] 2026-01-09 10:38:39,939 | INFO     | process IDs to be killed: [16361] (in reverse order)
[2026-01-09 11:39:41] 2026-01-09 10:38:39,991 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 11:39:41] 2026-01-09 10:38:39,992 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 11:39:41] 2026-01-09 10:38:39,994 | INFO     | did not find any defunct processes belonging to 16361
[2026-01-09 11:39:41] 2026-01-09 10:38:39,995 | INFO     | did not find any defunct processes belonging to 16361
[2026-01-09 11:39:41] 2026-01-09 10:38:39,995 | INFO     | ready for new job
[2026-01-09 11:39:41] 2026-01-09 10:38:39,996 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 11:39:41] 2026-01-09 10:38:39,998 | INFO     | ***************************************
[2026-01-09 11:39:41] 2026-01-09 10:38:39,998 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 11:39:41] 2026-01-09 10:38:39,998 | INFO     | ***************************************
[2026-01-09 11:39:41] 2026-01-09 10:38:39,998 | INFO     | 
[2026-01-09 11:39:41] 2026-01-09 10:38:39,999 | INFO     | pilot is running in a VM
[2026-01-09 11:39:41] 2026-01-09 10:38:39,999 | INFO     | architecture information:
[2026-01-09 11:39:41] 2026-01-09 10:38:40,000 | INFO     | executing command: cat /etc/os-release
[2026-01-09 11:39:41] 2026-01-09 10:38:40,017 | INFO     | cat /etc/os-release:
[2026-01-09 11:39:41] NAME="CentOS Linux"
[2026-01-09 11:39:41] VERSION="7 (Core)"
[2026-01-09 11:39:41] ID="centos"
[2026-01-09 11:39:41] ID_LIKE="rhel fedora"
[2026-01-09 11:39:41] VERSION_ID="7"
[2026-01-09 11:39:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 11:39:41] ANSI_COLOR="0;31"
[2026-01-09 11:39:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 11:39:41] HOME_URL="https://www.centos.org/"
[2026-01-09 11:39:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 11:39:41] 
[2026-01-09 11:39:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 11:39:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 11:39:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 11:39:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 11:39:41] 
[2026-01-09 11:39:41] 2026-01-09 10:38:40,018 | INFO     | ***************************************
[2026-01-09 11:39:41] 2026-01-09 10:38:40,521 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-09 11:39:41] 2026-01-09 10:38:40,539 | INFO     | sufficient remaining disk space (497612226560 B)
[2026-01-09 11:39:41] 2026-01-09 10:38:40,539 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 11:39:41] 2026-01-09 10:38:40,540 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 11:39:41] 2026-01-09 10:38:40,540 | INFO     | update_server=False
[2026-01-09 11:39:41] 2026-01-09 10:38:40,540 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 11:39:41] 2026-01-09 10:38:40,540 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-09 11:39:41] 2026-01-09 10:38:40,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:39:41] 2026-01-09 10:38:40,541 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 11:39:41] 2026-01-09 10:38:40,541 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 11:39:41] 2026-01-09 10:38:40,541 | INFO     | aborting loop
[2026-01-09 11:39:41] 2026-01-09 10:38:40,542 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 11:39:41] 2026-01-09 10:38:40,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 11:39:41] 2026-01-09 10:38:40,602 | INFO     | all payload control threads have been joined
[2026-01-09 11:39:41] 2026-01-09 10:38:41,167 | INFO     | all data control threads have been joined
[2026-01-09 11:39:41] 2026-01-09 10:38:41,546 | INFO     | [job] retrieve thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:41,546 | INFO     | [job] job monitor thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:41,547 | INFO     | [job] queue monitor thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:41,608 | INFO     | [payload] control thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:41,670 | INFO     | [payload] failed_post thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:42,001 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 11:39:41] 2026-01-09 10:38:42,113 | INFO     | [data] copytool_in thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:42,173 | INFO     | [data] control thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:42,188 | INFO     | all job control threads have been joined
[2026-01-09 11:39:41] 2026-01-09 10:38:42,456 | INFO     | [job] validate thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:42,733 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:42,787 | INFO     | [payload] validate_post thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:42,839 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:42,912 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:42,940 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:43,194 | INFO     | [job] control thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:43,295 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 11:39:41] 2026-01-09 10:38:44,007 | INFO     | [data] copytool_out thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:38:47,301 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 11:39:41] 2026-01-09 10:39:33,991 | INFO     | [monitor] cgroup control has ended
[2026-01-09 11:39:41] 2026-01-09 10:39:36,029 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245346445120)>', '<ExcThread(monitor, started 140244598892288)>']
[2026-01-09 11:39:41] 2026-01-09 10:39:36,748 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 11:39:41] 2026-01-09 10:39:36,749 | INFO     | [monitor] control thread has ended
[2026-01-09 11:39:41] 2026-01-09 10:39:41,055 | INFO     | all workflow threads have been joined
[2026-01-09 11:39:41] 2026-01-09 10:39:41,055 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 11:39:41] 2026-01-09 10:39:41,056 | INFO     | traces error code: 0
[2026-01-09 11:39:41] 2026-01-09 10:39:41,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 11:39:41] 2026-01-09 10:39:41,195 [wrapper] ==== pilot stdout END ====
[2026-01-09 11:39:41] 2026-01-09 10:39:41,198 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 11:39:41] 2026-01-09 10:39:41,201 [wrapper] pilotpid: 9893
[2026-01-09 11:39:41] 2026-01-09 10:39:41,205 [wrapper] Pilot exit status: 0
[2026-01-09 11:39:41] 2026-01-09 10:39:41,218 [wrapper] pandaids: 6963076865
[2026-01-09 11:39:41] 2026-01-09 10:39:41,251 [wrapper] cleanup supervisor_pilot 17122 9894
[2026-01-09 11:39:41] 2026-01-09 10:39:41,256 [wrapper] Test setup, not cleaning
[2026-01-09 11:39:41] 2026-01-09 10:39:41,259 [wrapper] apfmon messages muted
[2026-01-09 11:39:41] 2026-01-09 10:39:41,262 [wrapper] ==== wrapper stdout END ====
[2026-01-09 11:39:41] 2026-01-09 10:39:41,265 [wrapper] ==== wrapper stderr END ====
[2026-01-09 11:39:41]  *** Error codes and diagnostics ***
[2026-01-09 11:39:41]     "exeErrorCode": 0,
[2026-01-09 11:39:41]     "exeErrorDiag": "",
[2026-01-09 11:39:41]     "pilotErrorCode": 0,
[2026-01-09 11:39:41]     "pilotErrorDiag": "",
[2026-01-09 11:39:41]  *** Listing of results directory ***
[2026-01-09 11:39:41] total 785128
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc    579449 Jan  8 12:09 pilot3.tar.gz
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc      5112 Jan  8 12:56 queuedata.json
[2026-01-09 11:39:41] -rwx------. 1 boinc boinc     36322 Jan  8 12:56 runpilot2-wrapper.sh
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc       100 Jan  9 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 11:39:41] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 05:29 run_atlas
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc       105 Jan  9 05:29 job.xml
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc      6390 Jan  9 05:29 init_data.xml
[2026-01-09 11:39:41] -rw-r--r--. 2 boinc boinc 392786761 Jan  9 05:29 EVNT.47962006._000039.pool.root.1
[2026-01-09 11:39:41] -rw-r--r--. 2 boinc boinc     15847 Jan  9 05:29 start_atlas.sh
[2026-01-09 11:39:41] drwxrwx--x. 2 boinc boinc        68 Jan  9 05:29 shared
[2026-01-09 11:39:41] -rw-r--r--. 2 boinc boinc    592613 Jan  9 05:29 input.tar.gz
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc         0 Jan  9 05:29 boinc_lockfile
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc      2890 Jan  9 05:29 pandaJob.out
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc    989771 Jan  9 05:29 agis_schedconf.cvmfs.json
[2026-01-09 11:39:41] drwx------. 5 boinc boinc      4096 Jan  9 05:29 pilot3
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc       533 Jan  9 11:29 boinc_task_state.xml
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc        95 Jan  9 11:37 pilot_heartbeat.json
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc 398288935 Jan  9 11:38 HITS.47962010._000194.pool.root.1
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc      1020 Jan  9 11:38 memory_monitor_summary.json
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc   1516240 Jan  9 11:38 agis_ddmendpoints.agis.ALL.json
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc   1548827 Jan  9 11:38 log.47962010._000194.job.log.tgz.1
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc      8617 Jan  9 11:38 heartbeat.json
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc      8192 Jan  9 11:39 boinc_mmap_file
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc        29 Jan  9 11:39 wrapper_checkpoint.txt
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc      4615 Jan  9 11:39 pilotlog.txt
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc   2942370 Jan  9 11:39 log.47962010._000194.job.log.1
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc       353 Jan  9 11:39 output.list
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc       620 Jan  9 11:39 runtime_log
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc   4515840 Jan  9 11:39 result.tar.gz
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc       659 Jan  9 11:39 wxbMDmAo3x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOTkKDm6EnfWo.diag
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc      8817 Jan  9 11:39 runtime_log.err
[2026-01-09 11:39:41] -rw-r--r--. 1 boinc boinc     20825 Jan  9 11:39 stderr.txt
[2026-01-09 11:39:41] HITS file was successfully produced:
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc 398288935 Jan  9 11:38 shared/HITS.pool.root.1
[2026-01-09 11:39:41]  *** Contents of shared directory: ***
[2026-01-09 11:39:41] total 777548
[2026-01-09 11:39:41] -rw-r--r--. 2 boinc boinc 392786761 Jan  9 05:29 ATLAS.root_0
[2026-01-09 11:39:41] -rw-r--r--. 2 boinc boinc     15847 Jan  9 05:29 start_atlas.sh
[2026-01-09 11:39:41] -rw-r--r--. 2 boinc boinc    592613 Jan  9 05:29 input.tar.gz
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc 398288935 Jan  9 11:38 HITS.pool.root.1
[2026-01-09 11:39:41] -rw-------. 1 boinc boinc   4515840 Jan  9 11:39 result.tar.gz
11:39:42 (6173): run_atlas exited; CPU time 170883.289958
11:39:42 (6173): called boinc_finish(0)

</stderr_txt>
]]>

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