Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:28:37 (21562): wrapper (7.7.26015): starting
07:28:37 (21562): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 07:28:37] Arguments: --nthreads 8
[2026-01-09 07:28:37] Threads: 8
[2026-01-09 07:28:37] Checking for CVMFS
[2026-01-09 07:28:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 07:28:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 07:28:37] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 07:28:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 07:28:37] 2.11.2.0 6904 35056 92412 154934 0 56 15234744 25165825 0 130560 0 16888258 99.849 10153578 3488 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-09 07:28:37] CVMFS is ok
[2026-01-09 07:28:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 07:28:37] Checking for apptainer binary...
[2026-01-09 07:28:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 07:28:38] Running /usr/bin/apptainer --version
[2026-01-09 07:28:38] apptainer version 1.3.2-1.el7
[2026-01-09 07:28:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 07:28:39] cg-vwn474.simple-grid.lan
[2026-01-09 07:28:39] apptainer works
[2026-01-09 07:28:39] Set ATHENA_PROC_NUMBER=8
[2026-01-09 07:28:39] Set ATHENA_CORE_NUMBER=8
[2026-01-09 07:28:39] Starting ATLAS job with PandaID=6962920286
[2026-01-09 07:28:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 10:00:12]  *** The last 200 lines of the pilot log: ***
[2026-01-09 10:00:12] 2026-01-09 08:59:16,055 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-09 10:00:12] 2026-01-09 08:59:16,057 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6962920286/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 10:00:12] 2026-01-09 08:59:16,058 | INFO     | extracted standard info from prmon json
[2026-01-09 10:00:12] 2026-01-09 08:59:16,058 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 10:00:12] 2026-01-09 08:59:16,058 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 10:00:12] 2026-01-09 08:59:16,059 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 10:00:12] 2026-01-09 08:59:16,059 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 10:00:12] 2026-01-09 08:59:16,062 | INFO     | fitting pss+swap vs Time
[2026-01-09 10:00:12] 2026-01-09 08:59:16,062 | INFO     | sum of square deviations: 1005179777.0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,063 | INFO     | sum of deviations: -16641795886.0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,063 | INFO     | mean x: 1767944642.5
[2026-01-09 10:00:12] 2026-01-09 08:59:16,063 | INFO     | mean y: 2513417.0675675673
[2026-01-09 10:00:12] 2026-01-09 08:59:16,064 | INFO     | intersect: 29272674388.712585
[2026-01-09 10:00:12] 2026-01-09 08:59:16,064 | INFO     | chi2: 2.2936831792127874
[2026-01-09 10:00:12] 2026-01-09 08:59:16,064 | INFO     | sum of square deviations: 906703512.0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,065 | INFO     | sum of deviations: -6265281635.000004
[2026-01-09 10:00:12] 2026-01-09 08:59:16,065 | INFO     | mean x: 1767944490.0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,066 | INFO     | mean y: 2529073.5594405592
[2026-01-09 10:00:12] 2026-01-09 08:59:16,066 | INFO     | intersect: 12218948220.83241
[2026-01-09 10:00:12] 2026-01-09 08:59:16,066 | INFO     | chi2: 1.5309748177648146
[2026-01-09 10:00:12] 2026-01-09 08:59:16,066 | INFO     | current chi2=1.5309748177648146 (change=33.25255939269438 %)
[2026-01-09 10:00:12] 2026-01-09 08:59:16,066 | INFO     | sum of square deviations: 814878534.5
[2026-01-09 10:00:12] 2026-01-09 08:59:16,067 | INFO     | sum of deviations: -5818701763.499993
[2026-01-09 10:00:12] 2026-01-09 08:59:16,067 | INFO     | mean x: 1767944337.5
[2026-01-09 10:00:12] 2026-01-09 08:59:16,068 | INFO     | mean y: 2529815.5289855073
[2026-01-09 10:00:12] 2026-01-09 08:59:16,068 | INFO     | intersect: 12626669977.342363
[2026-01-09 10:00:12] 2026-01-09 08:59:16,068 | INFO     | chi2: 1.5301872223762378
[2026-01-09 10:00:12] 2026-01-09 08:59:16,068 | INFO     | current chi2=1.5301872223762378 (change=0.05144404593973831 %)
[2026-01-09 10:00:12] 2026-01-09 08:59:16,068 | INFO     | right removable region: 137
[2026-01-09 10:00:12] 2026-01-09 08:59:16,068 | INFO     | sum of square deviations: 906703512.0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,069 | INFO     | sum of deviations: -36916055457.0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,069 | INFO     | mean x: 1767944795.0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,070 | INFO     | mean y: 2544269.7762237764
[2026-01-09 10:00:12] 2026-01-09 08:59:16,070 | INFO     | intersect: 71983679484.71791
[2026-01-09 10:00:12] 2026-01-09 08:59:16,070 | INFO     | chi2: 0.9386833268640431
[2026-01-09 10:00:12] 2026-01-09 08:59:16,070 | INFO     | current chi2=0.9386833268640431 (change=59.07528400734893 %)
[2026-01-09 10:00:12] 2026-01-09 08:59:16,070 | INFO     | sum of square deviations: 814878534.5
[2026-01-09 10:00:12] 2026-01-09 08:59:16,071 | INFO     | sum of deviations: -32932133562.0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,071 | INFO     | mean x: 1767944947.5
[2026-01-09 10:00:12] 2026-01-09 08:59:16,071 | INFO     | mean y: 2537639.8985507246
[2026-01-09 10:00:12] 2026-01-09 08:59:16,071 | INFO     | intersect: 71451467359.2923
[2026-01-09 10:00:12] 2026-01-09 08:59:16,072 | INFO     | chi2: 0.937799114016642
[2026-01-09 10:00:12] 2026-01-09 08:59:16,072 | INFO     | current chi2=0.937799114016642 (change=0.09419713998278059 %)
[2026-01-09 10:00:12] 2026-01-09 08:59:16,072 | INFO     | left removable region: 20
[2026-01-09 10:00:12] 2026-01-09 08:59:16,072 | INFO     | sum of square deviations: 496597218.0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,073 | INFO     | sum of deviations: -13340152464.000002
[2026-01-09 10:00:12] 2026-01-09 08:59:16,073 | INFO     | mean x: 1767944917.0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,073 | INFO     | mean y: 2539364.230769231
[2026-01-09 10:00:12] 2026-01-09 08:59:16,073 | INFO     | intersect: 47495062249.71707
[2026-01-09 10:00:12] 2026-01-09 08:59:16,073 | INFO     | chi2: 0.11890606497218709
[2026-01-09 10:00:12] 2026-01-09 08:59:16,074 | INFO     | current memory leak: -26.86 B/s (using 117 data points, chi2=0.12)
[2026-01-09 10:00:12] 2026-01-09 08:59:16,074 | INFO     | could have reported an average CPU frequency of 2249 MHz (8 samples)
[2026-01-09 10:00:12] 2026-01-09 08:59:16,074 | INFO     | ..............................
[2026-01-09 10:00:12] 2026-01-09 08:59:16,074 | INFO     | . Timing measurements:
[2026-01-09 10:00:12] 2026-01-09 08:59:16,074 | INFO     | . get job = 0 s
[2026-01-09 10:00:12] 2026-01-09 08:59:16,075 | INFO     | . initial setup = 1 s
[2026-01-09 10:00:12] 2026-01-09 08:59:16,075 | INFO     | . payload setup = 5 s
[2026-01-09 10:00:12] 2026-01-09 08:59:16,075 | INFO     | . stage-in = 0 s
[2026-01-09 10:00:12] 2026-01-09 08:59:16,075 | INFO     | . payload execution = 8988 s
[2026-01-09 10:00:12] 2026-01-09 08:59:16,075 | INFO     | . stage-out = 0 s
[2026-01-09 10:00:12] 2026-01-09 08:59:16,075 | INFO     | . log creation = 0 s
[2026-01-09 10:00:12] 2026-01-09 08:59:16,075 | INFO     | ..............................
[2026-01-09 10:00:12] 2026-01-09 08:59:16,176 | INFO     | 
[2026-01-09 10:00:12] 2026-01-09 08:59:16,177 | INFO     | job summary report
[2026-01-09 10:00:12] 2026-01-09 08:59:16,177 | INFO     | --------------------------------------------------
[2026-01-09 10:00:12] 2026-01-09 08:59:16,177 | INFO     | PanDA job id: 6962920286
[2026-01-09 10:00:12] 2026-01-09 08:59:16,177 | INFO     | task id: 47898826
[2026-01-09 10:00:12] 2026-01-09 08:59:16,177 | INFO     | errors: (none)
[2026-01-09 10:00:12] 2026-01-09 08:59:16,177 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 10:00:12] 2026-01-09 08:59:16,177 | INFO     | pilot state: finished 
[2026-01-09 10:00:12] 2026-01-09 08:59:16,178 | INFO     | transexitcode: 0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,178 | INFO     | exeerrorcode: 0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,178 | INFO     | exeerrordiag: 
[2026-01-09 10:00:12] 2026-01-09 08:59:16,178 | INFO     | exitcode: 0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,178 | INFO     | exitmsg: OK
[2026-01-09 10:00:12] 2026-01-09 08:59:16,178 | INFO     | cpuconsumptiontime: 68828 s
[2026-01-09 10:00:12] 2026-01-09 08:59:16,178 | INFO     | nevents: 400
[2026-01-09 10:00:12] 2026-01-09 08:59:16,178 | INFO     | neventsw: 0
[2026-01-09 10:00:12] 2026-01-09 08:59:16,178 | INFO     | pid: 31756
[2026-01-09 10:00:12] 2026-01-09 08:59:16,178 | INFO     | pgrp: 31756
[2026-01-09 10:00:12] 2026-01-09 08:59:16,178 | INFO     | corecount: 8
[2026-01-09 10:00:12] 2026-01-09 08:59:16,179 | INFO     | event service: False
[2026-01-09 10:00:12] 2026-01-09 08:59:16,179 | INFO     | sizes: {0: 2283969, 4: 2284231, 11: 2284259, 8998: 2312081, 8999: 2321079, 9000: 2321135, 9008: 2321457}
[2026-01-09 10:00:12] 2026-01-09 08:59:16,179 | INFO     | --------------------------------------------------
[2026-01-09 10:00:12] 2026-01-09 08:59:16,179 | INFO     | 
[2026-01-09 10:00:12] 2026-01-09 08:59:16,179 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-01-09 10:00:12] 2026-01-09 08:59:16,203 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,203 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,203 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,203 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,204 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,204 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,204 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,204 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,204 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,205 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 10:00:12] 2026-01-09 08:59:16,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,205 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 10:00:12] 2026-01-09 08:59:16,205 | INFO     | job 6962920286 has completed (purged errors)
[2026-01-09 10:00:12] 2026-01-09 08:59:16,205 | INFO     | overall cleanup function is called
[2026-01-09 10:00:12] 2026-01-09 08:59:17,213 | INFO     | --- collectZombieJob: --- 10, [31756]
[2026-01-09 10:00:12] 2026-01-09 08:59:17,214 | INFO     | zombie collector waiting for pid 31756
[2026-01-09 10:00:12] 2026-01-09 08:59:17,214 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 10:00:12] 2026-01-09 08:59:17,214 | INFO     | collected zombie processes
[2026-01-09 10:00:12] 2026-01-09 08:59:17,214 | INFO     | will attempt to kill all subprocesses of pid=31756
[2026-01-09 10:00:12] 2026-01-09 08:59:17,276 | INFO     | process IDs to be killed: [31756] (in reverse order)
[2026-01-09 10:00:12] 2026-01-09 08:59:17,320 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 10:00:12] 2026-01-09 08:59:17,321 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 10:00:12] 2026-01-09 08:59:17,322 | INFO     | did not find any defunct processes belonging to 31756
[2026-01-09 10:00:12] 2026-01-09 08:59:17,324 | INFO     | did not find any defunct processes belonging to 31756
[2026-01-09 10:00:12] 2026-01-09 08:59:17,324 | INFO     | ready for new job
[2026-01-09 10:00:12] 2026-01-09 08:59:17,324 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 10:00:12] 2026-01-09 08:59:17,326 | INFO     | ***************************************
[2026-01-09 10:00:12] 2026-01-09 08:59:17,326 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 10:00:12] 2026-01-09 08:59:17,326 | INFO     | ***************************************
[2026-01-09 10:00:12] 2026-01-09 08:59:17,326 | INFO     | 
[2026-01-09 10:00:12] 2026-01-09 08:59:17,327 | INFO     | pilot is running in a VM
[2026-01-09 10:00:12] 2026-01-09 08:59:17,327 | INFO     | architecture information:
[2026-01-09 10:00:12] 2026-01-09 08:59:17,328 | INFO     | executing command: cat /etc/os-release
[2026-01-09 10:00:12] 2026-01-09 08:59:17,345 | INFO     | cat /etc/os-release:
[2026-01-09 10:00:12] NAME="CentOS Linux"
[2026-01-09 10:00:12] VERSION="7 (Core)"
[2026-01-09 10:00:12] ID="centos"
[2026-01-09 10:00:12] ID_LIKE="rhel fedora"
[2026-01-09 10:00:12] VERSION_ID="7"
[2026-01-09 10:00:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 10:00:12] ANSI_COLOR="0;31"
[2026-01-09 10:00:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 10:00:12] HOME_URL="https://www.centos.org/"
[2026-01-09 10:00:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 10:00:12] 
[2026-01-09 10:00:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 10:00:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 10:00:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 10:00:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 10:00:12] 
[2026-01-09 10:00:12] 2026-01-09 08:59:17,345 | INFO     | ***************************************
[2026-01-09 10:00:12] 2026-01-09 08:59:17,848 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-09 10:00:12] 2026-01-09 08:59:17,867 | INFO     | sufficient remaining disk space (497912119296 B)
[2026-01-09 10:00:12] 2026-01-09 08:59:17,868 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 10:00:12] 2026-01-09 08:59:17,868 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 10:00:12] 2026-01-09 08:59:17,868 | INFO     | update_server=False
[2026-01-09 10:00:12] 2026-01-09 08:59:17,868 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 10:00:12] 2026-01-09 08:59:17,869 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 10:00:12] 2026-01-09 08:59:17,869 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 10:00:12] 2026-01-09 08:59:17,883 | INFO     | all payload control threads have been joined
[2026-01-09 10:00:12] 2026-01-09 08:59:18,096 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 10:00:12] 2026-01-09 08:59:18,097 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 10:00:12] 2026-01-09 08:59:18,097 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 10:00:12] 2026-01-09 08:59:18,097 | INFO     | will abort loop
[2026-01-09 10:00:12] 2026-01-09 08:59:18,170 | INFO     | all job control threads have been joined
[2026-01-09 10:00:12] 2026-01-09 08:59:18,539 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 10:00:12] 2026-01-09 08:59:18,774 | INFO     | all data control threads have been joined
[2026-01-09 10:00:12] 2026-01-09 08:59:18,870 | INFO     | [job] retrieve thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:18,874 | INFO     | [job] queue monitor thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:18,889 | INFO     | [payload] control thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:19,103 | INFO     | [job] job monitor thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:19,176 | INFO     | [job] control thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:19,437 | INFO     | [payload] validate_post thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:19,542 | INFO     | [data] copytool_in thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:19,548 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:19,780 | INFO     | [data] control thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:19,876 | INFO     | [data] copytool_out thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:19,877 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:20,031 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:20,194 | INFO     | [job] validate thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:20,463 | INFO     | [payload] failed_post thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:22,545 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:27,989 | INFO     | job.realtimelogging is not enabled
[2026-01-09 10:00:12] 2026-01-09 08:59:28,995 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 10:00:12] 2026-01-09 08:59:47,420 | INFO     | PID=25316 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-09 10:00:12] 2026-01-09 08:59:47,421 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 10:00:12] 2026-01-09 08:59:47,422 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 10:00:12] 2026-01-09 08:59:47,422 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 10:00:12] 2026-01-09 09:00:06,681 | INFO     | [monitor] cgroup control has ended
[2026-01-09 10:00:12] 2026-01-09 09:00:06,998 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139891043710784)>', '<ExcThread(monitor, started 139890725459712)>']
[2026-01-09 10:00:12] 2026-01-09 09:00:07,519 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 10:00:12] 2026-01-09 09:00:07,519 | INFO     | [monitor] control thread has ended
[2026-01-09 10:00:12] 2026-01-09 09:00:12,023 | INFO     | all workflow threads have been joined
[2026-01-09 10:00:12] 2026-01-09 09:00:12,024 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 10:00:12] 2026-01-09 09:00:12,024 | INFO     | traces error code: 0
[2026-01-09 10:00:12] 2026-01-09 09:00:12,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 10:00:12] 2026-01-09 09:00:12,155 [wrapper] ==== pilot stdout END ====
[2026-01-09 10:00:12] 2026-01-09 09:00:12,158 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 10:00:12] 2026-01-09 09:00:12,164 [wrapper] pilotpid: 25316
[2026-01-09 10:00:12] 2026-01-09 09:00:12,168 [wrapper] Pilot exit status: 0
[2026-01-09 10:00:12] 2026-01-09 09:00:12,186 [wrapper] pandaids: 6962920286
[2026-01-09 10:00:12] 2026-01-09 09:00:12,217 [wrapper] cleanup supervisor_pilot 15887 25317
[2026-01-09 10:00:12] 2026-01-09 09:00:12,221 [wrapper] Test setup, not cleaning
[2026-01-09 10:00:12] 2026-01-09 09:00:12,224 [wrapper] apfmon messages muted
[2026-01-09 10:00:12] 2026-01-09 09:00:12,227 [wrapper] ==== wrapper stdout END ====
[2026-01-09 10:00:12] 2026-01-09 09:00:12,230 [wrapper] ==== wrapper stderr END ====
[2026-01-09 10:00:12]  *** Error codes and diagnostics ***
[2026-01-09 10:00:12]     "exeErrorCode": 0,
[2026-01-09 10:00:12]     "exeErrorDiag": "",
[2026-01-09 10:00:12]     "pilotErrorCode": 0,
[2026-01-09 10:00:12]     "pilotErrorDiag": "",
[2026-01-09 10:00:12]  *** Listing of results directory ***
[2026-01-09 10:00:12] total 435664
[2026-01-09 10:00:12] -rwx------. 1 boinc boinc     36322 Jan  8 09:07 runpilot2-wrapper.sh
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc    579449 Jan  8 09:11 pilot3.tar.gz
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc      5112 Jan  8 09:16 queuedata.json
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc       100 Jan  9 07:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 10:00:12] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 07:28 run_atlas
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc       105 Jan  9 07:28 job.xml
[2026-01-09 10:00:12] -rw-r--r--. 2 boinc boinc 221867781 Jan  9 07:28 EVNT.47898824._000831.pool.root.1
[2026-01-09 10:00:12] -rw-r--r--. 2 boinc boinc     15847 Jan  9 07:28 start_atlas.sh
[2026-01-09 10:00:12] drwxrwx--x. 2 boinc boinc        68 Jan  9 07:28 shared
[2026-01-09 10:00:12] -rw-r--r--. 2 boinc boinc    592402 Jan  9 07:28 input.tar.gz
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc      6391 Jan  9 07:28 init_data.xml
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc         0 Jan  9 07:28 boinc_lockfile
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc      2519 Jan  9 07:28 pandaJob.out
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc    989771 Jan  9 07:28 agis_schedconf.cvmfs.json
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc   1516240 Jan  9 07:28 agis_ddmendpoints.agis.ALL.json
[2026-01-09 10:00:12] drwx------. 5 boinc boinc      4096 Jan  9 07:28 pilot3
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc 217160703 Jan  9 09:58 HITS.47898826._021891.pool.root.1
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc       530 Jan  9 09:58 boinc_task_state.xml
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc      1015 Jan  9 09:59 memory_monitor_summary.json
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc    387780 Jan  9 09:59 log.47898826._021891.job.log.tgz.1
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc      7773 Jan  9 09:59 heartbeat.json
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc        95 Jan  9 09:59 pilot_heartbeat.json
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc      8192 Jan  9 10:00 boinc_mmap_file
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc        27 Jan  9 10:00 wrapper_checkpoint.txt
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc      5067 Jan  9 10:00 pilotlog.txt
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc   1212296 Jan  9 10:00 log.47898826._021891.job.log.1
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc       357 Jan  9 10:00 output.list
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc       620 Jan  9 10:00 runtime_log
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc   1617920 Jan  9 10:00 result.tar.gz
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc       652 Jan  9 10:00 VzBMDmwE0x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmGyjKDm0bMSmm.diag
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc      8816 Jan  9 10:00 runtime_log.err
[2026-01-09 10:00:12] -rw-r--r--. 1 boinc boinc     20714 Jan  9 10:00 stderr.txt
[2026-01-09 10:00:12] HITS file was successfully produced:
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc 217160703 Jan  9 09:58 shared/HITS.pool.root.1
[2026-01-09 10:00:12]  *** Contents of shared directory: ***
[2026-01-09 10:00:12] total 430916
[2026-01-09 10:00:12] -rw-r--r--. 2 boinc boinc 221867781 Jan  9 07:28 ATLAS.root_0
[2026-01-09 10:00:12] -rw-r--r--. 2 boinc boinc     15847 Jan  9 07:28 start_atlas.sh
[2026-01-09 10:00:12] -rw-r--r--. 2 boinc boinc    592402 Jan  9 07:28 input.tar.gz
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc 217160703 Jan  9 09:58 HITS.pool.root.1
[2026-01-09 10:00:12] -rw-------. 1 boinc boinc   1617920 Jan  9 10:00 result.tar.gz
10:00:14 (21562): run_atlas exited; CPU time 68882.362484
10:00:14 (21562): called boinc_finish(0)

</stderr_txt>
]]>

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