Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:23:22 (887186): wrapper (7.7.26015): starting
04:23:22 (887186): wrapper: running run_atlas (--nthreads 3)
[2026-01-09 04:23:22] Arguments: --nthreads 3
[2026-01-09 04:23:22] Threads: 3
[2026-01-09 04:23:22] Checking for CVMFS
[2026-01-09 04:23:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 04:23:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 04:23:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 04:23:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 04:23:23] 2.9.2.0 474489 1693 82080 154929 2 81 16125342 36864000 0 130560 0 1112955 99.989 63284 3002 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-09 04:23:23] CVMFS is ok
[2026-01-09 04:23:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 04:23:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 04:23:23] Further information can be found at the LHC@home message board.
[2026-01-09 04:23:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 04:23:23] Checking for apptainer binary...
[2026-01-09 04:23:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 04:23:23] Running /usr/bin/apptainer --version
[2026-01-09 04:23:23] apptainer version 1.4.1-1.1
[2026-01-09 04:23:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 04:23:23] thA371
[2026-01-09 04:23:23] apptainer works
[2026-01-09 04:23:23] Set ATHENA_PROC_NUMBER=3
[2026-01-09 04:23:23] Set ATHENA_CORE_NUMBER=3
[2026-01-09 04:23:23] Starting ATLAS job with PandaID=6963076871
[2026-01-09 04:23:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 08:50:52]  *** The last 200 lines of the pilot log: ***
[2026-01-09 08:50:52] 2026-01-09 07:50:06,966 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,966 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,966 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,966 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | job 6963076871 has completed (purged errors)
[2026-01-09 08:50:52] 2026-01-09 07:50:06,967 | INFO     | overall cleanup function is called
[2026-01-09 08:50:52] 2026-01-09 07:50:07,975 | INFO     | --- collectZombieJob: --- 10, [897351]
[2026-01-09 08:50:52] 2026-01-09 07:50:07,976 | INFO     | zombie collector waiting for pid 897351
[2026-01-09 08:50:52] 2026-01-09 07:50:07,976 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 08:50:52] 2026-01-09 07:50:07,976 | INFO     | collected zombie processes
[2026-01-09 08:50:52] 2026-01-09 07:50:07,976 | INFO     | will attempt to kill all subprocesses of pid=897351
[2026-01-09 08:50:52] 2026-01-09 07:50:08,018 | INFO     | process IDs to be killed: [897351] (in reverse order)
[2026-01-09 08:50:52] 2026-01-09 07:50:08,043 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 08:50:52] 2026-01-09 07:50:08,043 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 08:50:52] 2026-01-09 07:50:08,044 | INFO     | did not find any defunct processes belonging to 897351
[2026-01-09 08:50:52] 2026-01-09 07:50:08,045 | INFO     | did not find any defunct processes belonging to 897351
[2026-01-09 08:50:52] 2026-01-09 07:50:08,045 | INFO     | ready for new job
[2026-01-09 08:50:52] 2026-01-09 07:50:08,045 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 08:50:52] 2026-01-09 07:50:08,046 | INFO     | ***************************************
[2026-01-09 08:50:52] 2026-01-09 07:50:08,046 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 08:50:52] 2026-01-09 07:50:08,046 | INFO     | ***************************************
[2026-01-09 08:50:52] 2026-01-09 07:50:08,046 | INFO     | 
[2026-01-09 08:50:52] 2026-01-09 07:50:08,047 | INFO     | architecture information:
[2026-01-09 08:50:52] 2026-01-09 07:50:08,047 | INFO     | executing command: cat /etc/os-release
[2026-01-09 08:50:52] 2026-01-09 07:50:08,055 | INFO     | cat /etc/os-release:
[2026-01-09 08:50:52] NAME="CentOS Linux"
[2026-01-09 08:50:52] VERSION="7 (Core)"
[2026-01-09 08:50:52] ID="centos"
[2026-01-09 08:50:52] ID_LIKE="rhel fedora"
[2026-01-09 08:50:52] VERSION_ID="7"
[2026-01-09 08:50:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 08:50:52] ANSI_COLOR="0;31"
[2026-01-09 08:50:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 08:50:52] HOME_URL="https://www.centos.org/"
[2026-01-09 08:50:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 08:50:52] 
[2026-01-09 08:50:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 08:50:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 08:50:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 08:50:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 08:50:52] 
[2026-01-09 08:50:52] 2026-01-09 07:50:08,056 | INFO     | ***************************************
[2026-01-09 08:50:52] 2026-01-09 07:50:08,559 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-09 08:50:52] 2026-01-09 07:50:08,571 | INFO     | sufficient remaining disk space (344327192576 B)
[2026-01-09 08:50:52] 2026-01-09 07:50:08,571 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 08:50:52] 2026-01-09 07:50:08,572 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 08:50:52] 2026-01-09 07:50:08,572 | INFO     | update_server=False
[2026-01-09 08:50:52] 2026-01-09 07:50:08,572 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 08:50:52] 2026-01-09 07:50:08,572 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:50:52] 2026-01-09 07:50:08,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 08:50:52] 2026-01-09 07:50:08,572 | INFO     | aborting loop
[2026-01-09 08:50:52] 2026-01-09 07:50:08,572 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 08:50:52] 2026-01-09 07:50:08,921 | INFO     | all payload control threads have been joined
[2026-01-09 08:50:52] 2026-01-09 07:50:09,073 | INFO     | all job control threads have been joined
[2026-01-09 08:50:52] 2026-01-09 07:50:09,444 | INFO     | all data control threads have been joined
[2026-01-09 08:50:52] 2026-01-09 07:50:09,577 | INFO     | [job] queue monitor thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:09,578 | INFO     | [job] retrieve thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:09,578 | INFO     | [job] job monitor thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:09,851 | INFO     | [payload] failed_post thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:09,927 | INFO     | [payload] control thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:10,079 | INFO     | [job] control thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:10,374 | INFO     | [payload] validate_post thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:10,450 | INFO     | [data] control thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:10,551 | INFO     | [data] copytool_in thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:10,578 | INFO     | [data] copytool_out thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:10,730 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:10,957 | INFO     | [job] validate thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:11,005 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:11,035 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:11,210 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 08:50:52] 2026-01-09 07:50:15,217 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:19,489 | INFO     | job.realtimelogging is not enabled
[2026-01-09 08:50:52] 2026-01-09 07:50:20,494 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 08:50:52] 2026-01-09 07:50:38,227 | INFO     | PID=890911 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 08:50:52] 2026-01-09 07:50:38,227 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 08:50:52] 2026-01-09 07:50:38,228 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 08:50:52] 2026-01-09 07:50:38,228 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 08:50:52] 2026-01-09 07:50:47,131 | INFO     | [monitor] cgroup control has ended
[2026-01-09 08:50:52] 2026-01-09 07:50:47,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140498943235904)>', '<ExcThread(monitor, started 140498178144000)>']
[2026-01-09 08:50:52] 2026-01-09 07:50:48,275 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 08:50:52] 2026-01-09 07:50:48,275 | INFO     | [monitor] control thread has ended
[2026-01-09 08:50:52] 2026-01-09 07:50:52,576 | INFO     | all workflow threads have been joined
[2026-01-09 08:50:52] 2026-01-09 07:50:52,577 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 08:50:52] 2026-01-09 07:50:52,578 | INFO     | traces error code: 0
[2026-01-09 08:50:52] 2026-01-09 07:50:52,578 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 08:50:52] 2026-01-09 07:50:52,629 [wrapper] ==== pilot stdout END ====
[2026-01-09 08:50:52] 2026-01-09 07:50:52,631 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 08:50:52] 2026-01-09 07:50:52,633 [wrapper] pilotpid: 890911
[2026-01-09 08:50:52] 2026-01-09 07:50:52,636 [wrapper] Pilot exit status: 0
[2026-01-09 08:50:52] 2026-01-09 07:50:52,643 [wrapper] pandaids: 6963076871
[2026-01-09 08:50:52] 2026-01-09 07:50:52,660 [wrapper] cleanup supervisor_pilot  926523 890912
[2026-01-09 08:50:52] 2026-01-09 07:50:52,663 [wrapper] Test setup, not cleaning
[2026-01-09 08:50:52] 2026-01-09 07:50:52,665 [wrapper] apfmon messages muted
[2026-01-09 08:50:52] 2026-01-09 07:50:52,667 [wrapper] ==== wrapper stdout END ====
[2026-01-09 08:50:52] 2026-01-09 07:50:52,670 [wrapper] ==== wrapper stderr END ====
[2026-01-09 08:50:52]  *** Error codes and diagnostics ***
[2026-01-09 08:50:52]     "exeErrorCode": 0,
[2026-01-09 08:50:52]     "exeErrorDiag": "",
[2026-01-09 08:50:52]     "pilotErrorCode": 0,
[2026-01-09 08:50:52]     "pilotErrorDiag": "",
[2026-01-09 08:50:52]  *** Listing of results directory ***
[2026-01-09 08:50:52] total 779304
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc    579449 Jan  8 12:09 pilot3.tar.gz
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc      5112 Jan  8 12:56 queuedata.json
[2026-01-09 08:50:52] -rwx------ 1 boinc boinc     36322 Jan  8 12:56 runpilot2-wrapper.sh
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc       100 Jan  9 04:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 08:50:52] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 04:23 run_atlas
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc       105 Jan  9 04:23 job.xml
[2026-01-09 08:50:52] -rw-r--r-- 2 boinc boinc 392786761 Jan  9 04:23 EVNT.47962006._000039.pool.root.1
[2026-01-09 08:50:52] -rw-r--r-- 2 boinc boinc    592612 Jan  9 04:23 input.tar.gz
[2026-01-09 08:50:52] -rw-r--r-- 2 boinc boinc     15847 Jan  9 04:23 start_atlas.sh
[2026-01-09 08:50:52] drwxrwx--x 2 boinc boinc      4096 Jan  9 04:23 shared
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc         0 Jan  9 04:23 boinc_setup_complete
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc      6439 Jan  9 04:23 init_data.xml
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc         0 Jan  9 04:23 boinc_lockfile
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc      2890 Jan  9 04:23 pandaJob.out
[2026-01-09 08:50:52] -rw------- 1 boinc boinc    989771 Jan  9 04:23 agis_schedconf.cvmfs.json
[2026-01-09 08:50:52] drwx------ 5 boinc boinc      4096 Jan  9 04:23 pilot3
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc       531 Jan  9 08:46 boinc_task_state.xml
[2026-01-09 08:50:52] -rw------- 1 boinc boinc 394962274 Jan  9 08:49 HITS.47962010._000200.pool.root.1
[2026-01-09 08:50:52] -rw------- 1 boinc boinc        95 Jan  9 08:49 pilot_heartbeat.json
[2026-01-09 08:50:52] -rw------- 1 boinc boinc      1018 Jan  9 08:49 memory_monitor_summary.json
[2026-01-09 08:50:52] -rw------- 1 boinc boinc   1516240 Jan  9 08:49 agis_ddmendpoints.agis.ALL.json
[2026-01-09 08:50:52] -rw------- 1 boinc boinc    902591 Jan  9 08:49 log.47962010._000200.job.log.tgz.1
[2026-01-09 08:50:52] -rw------- 1 boinc boinc      8549 Jan  9 08:50 heartbeat.json
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc        28 Jan  9 08:50 wrapper_checkpoint.txt
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc      8192 Jan  9 08:50 boinc_mmap_file
[2026-01-09 08:50:52] -rw------- 1 boinc boinc      4823 Jan  9 08:50 pilotlog.txt
[2026-01-09 08:50:52] -rw------- 1 boinc boinc   2267844 Jan  9 08:50 log.47962010._000200.job.log.1
[2026-01-09 08:50:52] -rw------- 1 boinc boinc       353 Jan  9 08:50 output.list
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc       620 Jan  9 08:50 runtime_log
[2026-01-09 08:50:52] -rw------- 1 boinc boinc   3194880 Jan  9 08:50 result.tar.gz
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc      8898 Jan  9 08:50 runtime_log.err
[2026-01-09 08:50:52] -rw------- 1 boinc boinc       664 Jan  9 08:50 UBkMDmAo3x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUTkKDm9gbTWn.diag
[2026-01-09 08:50:52] -rw-r--r-- 1 boinc boinc     12329 Jan  9 08:50 stderr.txt
[2026-01-09 08:50:52] HITS file was successfully produced:
[2026-01-09 08:50:52] -rw------- 1 boinc boinc 394962274 Jan  9 08:49 shared/HITS.pool.root.1
[2026-01-09 08:50:52]  *** Contents of shared directory: ***
[2026-01-09 08:50:52] total 773016
[2026-01-09 08:50:52] -rw-r--r-- 2 boinc boinc 392786761 Jan  9 04:23 ATLAS.root_0
[2026-01-09 08:50:52] -rw-r--r-- 2 boinc boinc    592612 Jan  9 04:23 input.tar.gz
[2026-01-09 08:50:52] -rw-r--r-- 2 boinc boinc     15847 Jan  9 04:23 start_atlas.sh
[2026-01-09 08:50:52] -rw------- 1 boinc boinc 394962274 Jan  9 08:49 HITS.pool.root.1
[2026-01-09 08:50:52] -rw------- 1 boinc boinc   3194880 Jan  9 08:50 result.tar.gz
08:50:54 (887186): run_atlas exited; CPU time 46533.271094
08:50:54 (887186): called boinc_finish(0)

</stderr_txt>
]]>

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