Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:48:06 (630492): wrapper (7.7.26015): starting
18:48:06 (630492): wrapper: running run_atlas (--nthreads 9)
[2026-01-08 18:48:06] Arguments: --nthreads 9
[2026-01-08 18:48:06] Threads: 9
[2026-01-08 18:48:06] Checking for CVMFS
[2026-01-08 18:48:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 18:48:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 18:48:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 18:48:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 18:48:08] 2.13.3.0 12548 92648 388264 154924 2 180 37466783 40960001 12834 16776704 34 387369399 99.607 403581696 36438 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-08 18:48:08] CVMFS is ok
[2026-01-08 18:48:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 18:48:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 18:48:08] Further information can be found at the LHC@home message board.
[2026-01-08 18:48:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 18:48:08] Checking for apptainer binary...
[2026-01-08 18:48:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 18:48:08] Running /usr/bin/apptainer --version
[2026-01-08 18:48:09] apptainer version 1.4.5-2.el9
[2026-01-08 18:48:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 18:48:10] c7-11-12.aglt2.org
[2026-01-08 18:48:10] apptainer works
[2026-01-08 18:48:10] Set ATHENA_PROC_NUMBER=9
[2026-01-08 18:48:10] Set ATHENA_CORE_NUMBER=9
[2026-01-08 18:48:10] Starting ATLAS job with PandaID=6963152904
[2026-01-08 18:48:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 05:42:41]  *** The last 200 lines of the pilot log: ***
[2026-01-09 05:42:41] 2026-01-09 10:41:39,082 | INFO     | time since job start (39134s) is within the limit (349056.0s)
[2026-01-09 05:42:41] 2026-01-09 10:41:39,875 | INFO     | monitor loop #2472: job 0:6963152904 is in state 'finished'
[2026-01-09 05:42:41] 2026-01-09 10:41:39,875 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 05:42:41] 2026-01-09 10:41:41,129 | INFO     | time since job start (39136s) is within the limit (349056.0s)
[2026-01-09 05:42:41] 2026-01-09 10:41:42,402 | INFO     | monitor loop #2473: job 0:6963152904 is in state 'finished'
[2026-01-09 05:42:41] 2026-01-09 10:41:42,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 05:42:41] 2026-01-09 10:41:42,907 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 05:42:41] 2026-01-09 10:41:42,940 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.143921875001
[2026-01-09 05:42:41] 2026-01-09 10:41:43,017 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963152904/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 05:42:41] 2026-01-09 10:41:43,071 | INFO     | extracted standard info from prmon json
[2026-01-09 05:42:41] 2026-01-09 10:41:43,071 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 05:42:41] 2026-01-09 10:41:43,071 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 05:42:41] 2026-01-09 10:41:43,072 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 05:42:41] 2026-01-09 10:41:43,072 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 05:42:41] 2026-01-09 10:41:43,141 | INFO     | fitting pss+swap vs Time
[2026-01-09 05:42:41] 2026-01-09 10:41:43,142 | INFO     | sum of square deviations: 80907210981.6934
[2026-01-09 05:42:41] 2026-01-09 10:41:43,213 | INFO     | time since job start (39138s) is within the limit (349056.0s)
[2026-01-09 05:42:41] 2026-01-09 10:41:43,216 | INFO     | sum of deviations: 200116434558.19415
[2026-01-09 05:42:41] 2026-01-09 10:41:43,216 | INFO     | mean x: 1767935755.0219092
[2026-01-09 05:42:41] 2026-01-09 10:41:43,354 | INFO     | mean y: 2549424.414710485
[2026-01-09 05:42:41] 2026-01-09 10:41:43,354 | INFO     | intersect: -4370274648.126673
[2026-01-09 05:42:41] 2026-01-09 10:41:43,355 | INFO     | chi2: 3.922603743419685
[2026-01-09 05:42:41] 2026-01-09 10:41:43,355 | INFO     | sum of square deviations: 79022913318.09634
[2026-01-09 05:42:41] 2026-01-09 10:41:43,424 | INFO     | sum of deviations: 243527566526.80304
[2026-01-09 05:42:41] 2026-01-09 10:41:43,424 | INFO     | mean x: 1767935602.5252366
[2026-01-09 05:42:41] 2026-01-09 10:41:43,424 | INFO     | mean y: 2552914.4810725553
[2026-01-09 05:42:41] 2026-01-09 10:41:43,424 | INFO     | intersect: -5445753620.687807
[2026-01-09 05:42:41] 2026-01-09 10:41:43,425 | INFO     | chi2: 3.090625725894029
[2026-01-09 05:42:41] 2026-01-09 10:41:43,425 | INFO     | current chi2=3.090625725894029 (change=21.20984101239719 %)
[2026-01-09 05:42:41] 2026-01-09 10:41:43,425 | INFO     | right removable region: 633
[2026-01-09 05:42:41] 2026-01-09 10:41:43,426 | INFO     | sum of square deviations: 79022632293.93054
[2026-01-09 05:42:41] 2026-01-09 10:41:43,497 | INFO     | sum of deviations: 19435044457.56465
[2026-01-09 05:42:41] 2026-01-09 10:41:43,497 | INFO     | mean x: 1767935907.5299685
[2026-01-09 05:42:41] 2026-01-09 10:41:43,497 | INFO     | mean y: 2564031.733438486
[2026-01-09 05:42:41] 2026-01-09 10:41:43,497 | INFO     | intersect: -432247008.6425085
[2026-01-09 05:42:41] 2026-01-09 10:41:43,498 | INFO     | chi2: 1.1038197025910401
[2026-01-09 05:42:41] 2026-01-09 10:41:43,498 | INFO     | current chi2=1.1038197025910401 (change=71.8600252589179 %)
[2026-01-09 05:42:41] 2026-01-09 10:41:43,530 | INFO     | sum of square deviations: 77167542531.08426
[2026-01-09 05:42:41] 2026-01-09 10:41:43,567 | INFO     | sum of deviations: -5566596403.691574
[2026-01-09 05:42:41] 2026-01-09 10:41:43,567 | INFO     | mean x: 1767936060.0381558
[2026-01-09 05:42:41] 2026-01-09 10:41:43,597 | INFO     | mean y: 2566078.40381558
[2026-01-09 05:42:41] 2026-01-09 10:41:43,597 | INFO     | intersect: 130098797.35493144
[2026-01-09 05:42:41] 2026-01-09 10:41:43,598 | INFO     | chi2: 1.004362718972991
[2026-01-09 05:42:41] 2026-01-09 10:41:43,598 | INFO     | current chi2=1.004362718972991 (change=9.01025623882142 %)
[2026-01-09 05:42:41] 2026-01-09 10:41:43,598 | INFO     | left removable region: 20
[2026-01-09 05:42:41] 2026-01-09 10:41:43,598 | INFO     | sum of square deviations: 71427043269.34749
[2026-01-09 05:42:41] 2026-01-09 10:41:43,799 | INFO     | sum of deviations: 74935335684.9511
[2026-01-09 05:42:41] 2026-01-09 10:41:43,799 | INFO     | mean x: 1767936182.0326264
[2026-01-09 05:42:41] 2026-01-09 10:41:43,799 | INFO     | mean y: 2566599.502446982
[2026-01-09 05:42:41] 2026-01-09 10:41:43,799 | INFO     | intersect: -1852205559.7007198
[2026-01-09 05:42:41] 2026-01-09 10:41:43,800 | INFO     | chi2: 0.06365745457223253
[2026-01-09 05:42:41] 2026-01-09 10:41:43,800 | INFO     | current memory leak: 1.05 B/s (using 613 data points, chi2=0.06)
[2026-01-09 05:42:41] 2026-01-09 10:41:43,801 | INFO     | could have reported an average CPU frequency of 3275 MHz (25 samples)
[2026-01-09 05:42:41] 2026-01-09 10:41:43,801 | INFO     | ..............................
[2026-01-09 05:42:41] 2026-01-09 10:41:43,801 | INFO     | . Timing measurements:
[2026-01-09 05:42:41] 2026-01-09 10:41:43,801 | INFO     | . get job = 0 s
[2026-01-09 05:42:41] 2026-01-09 10:41:43,801 | INFO     | . initial setup = 8 s
[2026-01-09 05:42:41] 2026-01-09 10:41:43,801 | INFO     | . payload setup = 43 s
[2026-01-09 05:42:41] 2026-01-09 10:41:43,801 | INFO     | . stage-in = 0 s
[2026-01-09 05:42:41] 2026-01-09 10:41:43,801 | INFO     | . payload execution = 38987 s
[2026-01-09 05:42:41] 2026-01-09 10:41:43,801 | INFO     | . stage-out = 7 s
[2026-01-09 05:42:41] 2026-01-09 10:41:43,801 | INFO     | . log creation = 0 s
[2026-01-09 05:42:41] 2026-01-09 10:41:43,801 | INFO     | ..............................
[2026-01-09 05:42:41] 2026-01-09 10:41:44,972 | INFO     | 
[2026-01-09 05:42:41] 2026-01-09 10:41:44,972 | INFO     | job summary report
[2026-01-09 05:42:41] 2026-01-09 10:41:44,972 | INFO     | --------------------------------------------------
[2026-01-09 05:42:41] 2026-01-09 10:41:44,972 | INFO     | PanDA job id: 6963152904
[2026-01-09 05:42:41] 2026-01-09 10:41:44,972 | INFO     | task id: 47898826
[2026-01-09 05:42:41] 2026-01-09 10:41:44,972 | INFO     | errors: (none)
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | pilot state: finished 
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | transexitcode: 0
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | exeerrorcode: 0
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | exeerrordiag: 
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | exitcode: 0
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | exitmsg: OK
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | cpuconsumptiontime: 47802 s
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | nevents: 400
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | neventsw: 0
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | pid: 646622
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | pgrp: 646622
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | corecount: 9
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | event service: False
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | sizes: {0: 2283142, 1: 2283827, 2: 2284026, 13: 2284026, 22: 2284344, 24: 2284372, 39036: 2327065, 39045: 2336063, 39047: 2336119, 39088: 2336377}
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | --------------------------------------------------
[2026-01-09 05:42:41] 2026-01-09 10:41:44,973 | INFO     | 
[2026-01-09 05:42:41] 2026-01-09 10:41:44,974 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 05:42:41] 2026-01-09 10:41:45,415 | INFO     | time since job start (39140s) is within the limit (349056.0s)
[2026-01-09 05:42:41] 2026-01-09 10:41:45,415 | INFO     | 39148s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 05:42:41] 2026-01-09 10:41:45,418 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,418 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,418 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 05:42:41] 2026-01-09 10:41:45,419 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,420 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 05:42:41] 2026-01-09 10:41:45,420 | INFO     | job 6963152904 has completed (purged errors)
[2026-01-09 05:42:41] 2026-01-09 10:41:45,420 | INFO     | overall cleanup function is called
[2026-01-09 05:42:41] 2026-01-09 10:41:46,587 | INFO     | --- collectZombieJob: --- 10, [646622]
[2026-01-09 05:42:41] 2026-01-09 10:41:46,587 | INFO     | zombie collector waiting for pid 646622
[2026-01-09 05:42:41] 2026-01-09 10:41:46,587 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 05:42:41] 2026-01-09 10:41:46,587 | INFO     | collected zombie processes
[2026-01-09 05:42:41] 2026-01-09 10:41:46,587 | INFO     | will attempt to kill all subprocesses of pid=646622
[2026-01-09 05:42:41] 2026-01-09 10:41:49,178 | INFO     | process IDs to be killed: [646622] (in reverse order)
[2026-01-09 05:42:41] 2026-01-09 10:41:50,292 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 05:42:41] 2026-01-09 10:41:50,292 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 05:42:41] 2026-01-09 10:41:50,304 | INFO     | did not find any defunct processes belonging to 646622
[2026-01-09 05:42:41] 2026-01-09 10:41:50,313 | INFO     | did not find any defunct processes belonging to 646622
[2026-01-09 05:42:41] 2026-01-09 10:41:50,313 | INFO     | ready for new job
[2026-01-09 05:42:41] 2026-01-09 10:41:50,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 05:42:41] 2026-01-09 10:41:50,316 | INFO     | ***************************************
[2026-01-09 05:42:41] 2026-01-09 10:41:50,317 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 05:42:41] 2026-01-09 10:41:50,317 | INFO     | ***************************************
[2026-01-09 05:42:41] 2026-01-09 10:41:50,317 | INFO     | 
[2026-01-09 05:42:41] 2026-01-09 10:41:50,320 | INFO     | architecture information:
[2026-01-09 05:42:41] 2026-01-09 10:41:50,320 | INFO     | executing command: cat /etc/os-release
[2026-01-09 05:42:41] 2026-01-09 10:41:50,338 | INFO     | cat /etc/os-release:
[2026-01-09 05:42:41] NAME="CentOS Linux"
[2026-01-09 05:42:41] VERSION="7 (Core)"
[2026-01-09 05:42:41] ID="centos"
[2026-01-09 05:42:41] ID_LIKE="rhel fedora"
[2026-01-09 05:42:41] VERSION_ID="7"
[2026-01-09 05:42:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 05:42:41] ANSI_COLOR="0;31"
[2026-01-09 05:42:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 05:42:41] HOME_URL="https://www.centos.org/"
[2026-01-09 05:42:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 05:42:41] 
[2026-01-09 05:42:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 05:42:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 05:42:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 05:42:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 05:42:41] 
[2026-01-09 05:42:41] 2026-01-09 10:41:50,338 | INFO     | ***************************************
[2026-01-09 05:42:41] 2026-01-09 10:41:50,842 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 05:42:41] 2026-01-09 10:41:50,908 | INFO     | sufficient remaining disk space (84249935872 B)
[2026-01-09 05:42:41] 2026-01-09 10:41:50,908 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 05:42:41] 2026-01-09 10:41:50,908 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 05:42:41] 2026-01-09 10:41:50,909 | INFO     | update_server=False
[2026-01-09 05:42:41] 2026-01-09 10:41:50,909 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 05:42:41] 2026-01-09 10:41:50,934 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:42:41] 2026-01-09 10:41:50,949 | INFO     | all payload control threads have been joined
[2026-01-09 05:42:41] 2026-01-09 10:41:51,014 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 05:42:41] 2026-01-09 10:41:51,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 05:42:41] 2026-01-09 10:41:51,151 | INFO     | all job control threads have been joined
[2026-01-09 05:42:41] 2026-01-09 10:41:51,258 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 05:42:41] 2026-01-09 10:41:51,258 | INFO     | aborting loop
[2026-01-09 05:42:41] 2026-01-09 10:41:51,479 | INFO     | all data control threads have been joined
[2026-01-09 05:42:41] 2026-01-09 10:41:51,915 | INFO     | [job] retrieve thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:51,945 | INFO     | [payload] failed_post thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:51,956 | INFO     | [payload] control thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:51,956 | INFO     | [job] queue monitor thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:52,157 | INFO     | [job] control thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:52,281 | INFO     | [job] job monitor thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:52,363 | INFO     | [payload] validate_post thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:52,503 | INFO     | [data] control thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:52,652 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:52,687 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:52,796 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:52,796 | INFO     | [data] copytool_in thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:52,797 | INFO     | [job] validate thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:52,803 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:53,125 | INFO     | [data] copytool_out thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:41:55,028 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 05:42:41] 2026-01-09 10:42:21,725 | INFO     | PID=636192 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 05:42:41] 2026-01-09 10:42:21,725 | INFO     | .. there are 12 such processes running
[2026-01-09 05:42:41] 2026-01-09 10:42:21,756 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 05:42:41] 2026-01-09 10:42:21,756 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 05:42:41] 2026-01-09 10:42:21,756 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 05:42:41] 2026-01-09 10:42:32,863 | INFO     | [monitor] cgroup control has ended
[2026-01-09 05:42:41] 2026-01-09 10:42:34,228 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140258663761728)>', '<ExcThread(monitor, started 140258171668224)>']
[2026-01-09 05:42:41] 2026-01-09 10:42:34,888 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 05:42:41] 2026-01-09 10:42:34,888 | INFO     | [monitor] control thread has ended
[2026-01-09 05:42:41] 2026-01-09 10:42:39,255 | INFO     | all workflow threads have been joined
[2026-01-09 05:42:41] 2026-01-09 10:42:39,255 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 05:42:41] 2026-01-09 10:42:39,255 | INFO     | traces error code: 0
[2026-01-09 05:42:41] 2026-01-09 10:42:39,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 05:42:41] 2026-01-09 10:42:40,131 [wrapper] ==== pilot stdout END ====
[2026-01-09 05:42:41] 2026-01-09 10:42:40,162 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 05:42:41] 2026-01-09 10:42:40,205 [wrapper] pilotpid: 636192
[2026-01-09 05:42:41] 2026-01-09 10:42:40,209 [wrapper] Pilot exit status: 0
[2026-01-09 05:42:41] 2026-01-09 10:42:40,302 [wrapper] pandaids: 6963152904
[2026-01-09 05:42:41] 2026-01-09 10:42:40,426 [wrapper] cleanup supervisor_pilot 2086962 636193
[2026-01-09 05:42:41] 2026-01-09 10:42:40,476 [wrapper] Test setup, not cleaning
[2026-01-09 05:42:41] 2026-01-09 10:42:40,548 [wrapper] apfmon messages muted
[2026-01-09 05:42:41] 2026-01-09 10:42:40,586 [wrapper] ==== wrapper stdout END ====
[2026-01-09 05:42:41] 2026-01-09 10:42:40,632 [wrapper] ==== wrapper stderr END ====
[2026-01-09 05:42:41]  *** Error codes and diagnostics ***
[2026-01-09 05:42:41]     "exeErrorCode": 0,
[2026-01-09 05:42:41]     "exeErrorDiag": "",
[2026-01-09 05:42:41]     "pilotErrorCode": 0,
[2026-01-09 05:42:41]     "pilotErrorDiag": "",
[2026-01-09 05:42:41]  *** Listing of results directory ***
[2026-01-09 05:42:41] total 450620
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-09 05:42:41] -rwx------. 1 boincer umatlas     36322 Jan  8 11:07 runpilot2-wrapper.sh
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 11:09 queuedata.json
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas       100 Jan  8 18:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 05:42:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  8 18:48 run_atlas
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas       105 Jan  8 18:48 job.xml
[2026-01-09 05:42:41] -rw-r--r--. 2 boincer umatlas 227361791 Jan  8 18:48 EVNT.47898824._001145.pool.root.1
[2026-01-09 05:42:41] drwxrwx--x. 2 boincer umatlas      4096 Jan  8 18:48 shared
[2026-01-09 05:42:41] -rw-r--r--. 2 boincer umatlas    592397 Jan  8 18:48 input.tar.gz
[2026-01-09 05:42:41] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 18:48 start_atlas.sh
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas         0 Jan  8 18:48 boinc_lockfile
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas      2519 Jan  8 18:48 pandaJob.out
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas        57 Jan  8 18:48 setup.sh.local
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas    989837 Jan  8 18:49 agis_schedconf.cvmfs.json
[2026-01-09 05:42:41] drwx------. 5 boincer umatlas      4096 Jan  8 18:49 pilot3
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas 218540205 Jan  9 05:40 HITS.47898826._029606.pool.root.1
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas       531 Jan  9 05:40 boinc_task_state.xml
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas      6902 Jan  9 05:40 init_data.xml
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas      1030 Jan  9 05:40 memory_monitor_summary.json
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas   1516240 Jan  9 05:40 agis_ddmendpoints.agis.ALL.json
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas    788454 Jan  9 05:40 log.47898826._029606.job.log.tgz.1
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas      7774 Jan  9 05:41 heartbeat.json
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas        95 Jan  9 05:42 pilot_heartbeat.json
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas        28 Jan  9 05:42 wrapper_checkpoint.txt
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas      4823 Jan  9 05:42 pilotlog.txt
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 05:42 boinc_mmap_file
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas   5018060 Jan  9 05:42 log.47898826._029606.job.log.1
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas       357 Jan  9 05:42 output.list
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas       620 Jan  9 05:42 runtime_log
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas   5826560 Jan  9 05:42 result.tar.gz
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas       658 Jan  9 05:42 x4CMDmZi7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmOtfKDmZjm9So.diag
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 05:42 runtime_log.err
[2026-01-09 05:42:41] -rw-r--r--. 1 boincer umatlas     20537 Jan  9 05:42 stderr.txt
[2026-01-09 05:42:41] HITS file was successfully produced:
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas 218540205 Jan  9 05:40 shared/HITS.pool.root.1
[2026-01-09 05:42:41]  *** Contents of shared directory: ***
[2026-01-09 05:42:41] total 441748
[2026-01-09 05:42:41] -rw-r--r--. 2 boincer umatlas 227361791 Jan  8 18:48 ATLAS.root_0
[2026-01-09 05:42:41] -rw-r--r--. 2 boincer umatlas    592397 Jan  8 18:48 input.tar.gz
[2026-01-09 05:42:41] -rw-r--r--. 2 boincer umatlas     15847 Jan  8 18:48 start_atlas.sh
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas 218540205 Jan  9 05:40 HITS.pool.root.1
[2026-01-09 05:42:41] -rw-------. 1 boincer umatlas   5826560 Jan  9 05:42 result.tar.gz
05:43:02 (630492): run_atlas exited; CPU time 48692.299967
05:43:02 (630492): called boinc_finish(0)

</stderr_txt>
]]>

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