Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:05:42 (2588): wrapper (7.7.26015): starting
17:05:42 (2588): wrapper: running run_atlas (--nthreads 8)
[2026-01-08 17:05:42] Arguments: --nthreads 8
[2026-01-08 17:05:42] Threads: 8
[2026-01-08 17:05:42] Checking for CVMFS
[2026-01-08 17:05:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 17:05:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 17:05:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 17:05:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 17:05:43] 2.11.2.0 2830 135795 84272 154920 3 59 12397978 20275200 1 130560 0 37035481 99.891 7481339 32853 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 17:05:43] CVMFS is ok
[2026-01-08 17:05:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 17:05:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 17:05:43] Further information can be found at the LHC@home message board.
[2026-01-08 17:05:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 17:05:43] Checking for apptainer binary...
[2026-01-08 17:05:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 17:05:43] Running /usr/bin/apptainer --version
[2026-01-08 17:05:43] apptainer version 1.3.2-1.el7
[2026-01-08 17:05:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 17:05:45] c-204-20.aglt2.org
[2026-01-08 17:05:45] apptainer works
[2026-01-08 17:05:45] Set ATHENA_PROC_NUMBER=8
[2026-01-08 17:05:45] Set ATHENA_CORE_NUMBER=8
[2026-01-08 17:05:45] Starting ATLAS job with PandaID=6963151900
[2026-01-08 17:05:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 20:05:26]  *** The last 200 lines of the pilot log: ***
[2026-01-08 20:05:26] 2026-01-09 01:04:37,736 | INFO     | intersect: -29471593444.900394
[2026-01-08 20:05:26] 2026-01-09 01:04:37,736 | INFO     | chi2: 1.388175055543774
[2026-01-08 20:05:26] 2026-01-09 01:04:37,736 | INFO     | current chi2=1.388175055543774 (change=-0.061129519444541626 %)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,737 | INFO     | right removable region: 169
[2026-01-08 20:05:26] 2026-01-09 01:04:37,737 | INFO     | sum of square deviations: 1523386702.5
[2026-01-08 20:05:26] 2026-01-09 01:04:37,738 | INFO     | sum of deviations: 1349448282.9999998
[2026-01-08 20:05:26] 2026-01-09 01:04:37,738 | INFO     | mean x: 1767915452.5
[2026-01-08 20:05:26] 2026-01-09 01:04:37,738 | INFO     | mean y: 2507667.129411765
[2026-01-08 20:05:26] 2026-01-09 01:04:37,738 | INFO     | intersect: -1563549374.0342994
[2026-01-08 20:05:26] 2026-01-09 01:04:37,739 | INFO     | chi2: 0.02839449642662847
[2026-01-08 20:05:26] 2026-01-09 01:04:37,739 | INFO     | current chi2=0.02839449642662847 (change=97.95329459837374 %)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,739 | INFO     | sum of square deviations: 1392881930.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,740 | INFO     | sum of deviations: 2054345129.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,740 | INFO     | mean x: 1767915605.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,740 | INFO     | mean y: 2506780.3878787877
[2026-01-08 20:05:26] 2026-01-09 01:04:37,741 | INFO     | intersect: -2604971092.2088585
[2026-01-08 20:05:26] 2026-01-09 01:04:37,741 | INFO     | chi2: 0.011384935169768236
[2026-01-08 20:05:26] 2026-01-09 01:04:37,741 | INFO     | current chi2=0.011384935169768236 (change=59.90443007437385 %)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,741 | INFO     | sum of square deviations: 1270051720.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,742 | INFO     | sum of deviations: 2160070207.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,742 | INFO     | mean x: 1767915757.5
[2026-01-08 20:05:26] 2026-01-09 01:04:37,742 | INFO     | mean y: 2506688.375
[2026-01-08 20:05:26] 2026-01-09 01:04:37,742 | INFO     | intersect: -3004317440.2215796
[2026-01-08 20:05:26] 2026-01-09 01:04:37,743 | INFO     | chi2: 0.0009561879480910843
[2026-01-08 20:05:26] 2026-01-09 01:04:37,743 | INFO     | current chi2=0.0009561879480910843 (change=91.60128772072271 %)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,743 | INFO     | sum of square deviations: 1154663510.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,744 | INFO     | sum of deviations: 1319529125.0000002
[2026-01-08 20:05:26] 2026-01-09 01:04:37,744 | INFO     | mean x: 1767915910.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,744 | INFO     | mean y: 2507797.806451613
[2026-01-08 20:05:26] 2026-01-09 01:04:37,744 | INFO     | intersect: -2017835370.2182133
[2026-01-08 20:05:26] 2026-01-09 01:04:37,745 | INFO     | chi2: 0.0003149198046161622
[2026-01-08 20:05:26] 2026-01-09 01:04:37,745 | INFO     | current chi2=0.0003149198046161622 (change=67.06507279820227 %)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,745 | INFO     | sum of square deviations: 1046484737.5
[2026-01-08 20:05:26] 2026-01-09 01:04:37,746 | INFO     | sum of deviations: 901562615.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,746 | INFO     | mean x: 1767916062.5
[2026-01-08 20:05:26] 2026-01-09 01:04:37,746 | INFO     | mean y: 2508384.2933333335
[2026-01-08 20:05:26] 2026-01-09 01:04:37,746 | INFO     | intersect: -1520578356.7667613
[2026-01-08 20:05:26] 2026-01-09 01:04:37,746 | INFO     | chi2: 0.00015589778312145977
[2026-01-08 20:05:26] 2026-01-09 01:04:37,747 | INFO     | current chi2=0.00015589778312145977 (change=50.49603713825661 %)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,747 | INFO     | sum of square deviations: 945282840.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,748 | INFO     | sum of deviations: 669816905.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,748 | INFO     | mean x: 1767916215.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,748 | INFO     | mean y: 2508733.627586207
[2026-01-08 20:05:26] 2026-01-09 01:04:37,748 | INFO     | intersect: -1250217029.8387375
[2026-01-08 20:05:26] 2026-01-09 01:04:37,748 | INFO     | chi2: 0.00011941748882151023
[2026-01-08 20:05:26] 2026-01-09 01:04:37,749 | INFO     | current chi2=0.00011941748882151023 (change=23.400136659754672 %)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,749 | INFO     | left removable region: 60
[2026-01-08 20:05:26] 2026-01-09 01:04:37,749 | INFO     | sum of square deviations: 401533110.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,750 | INFO     | sum of deviations: 305507520.00000006
[2026-01-08 20:05:26] 2026-01-09 01:04:37,750 | INFO     | mean x: 1767916947.0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,750 | INFO     | mean y: 2509331.137614679
[2026-01-08 20:05:26] 2026-01-09 01:04:37,750 | INFO     | intersect: -1342614915.3882608
[2026-01-08 20:05:26] 2026-01-09 01:04:37,750 | INFO     | chi2: 7.043302444229344e-05
[2026-01-08 20:05:26] 2026-01-09 01:04:37,750 | INFO     | current memory leak: 0.76 B/s (using 109 data points, chi2=0.00)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,751 | INFO     | could have reported an average CPU frequency of 2021 MHz (9 samples)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,751 | INFO     | ..............................
[2026-01-08 20:05:26] 2026-01-09 01:04:37,751 | INFO     | . Timing measurements:
[2026-01-08 20:05:26] 2026-01-09 01:04:37,751 | INFO     | . get job = 0 s
[2026-01-08 20:05:26] 2026-01-09 01:04:37,751 | INFO     | . initial setup = 2 s
[2026-01-08 20:05:26] 2026-01-09 01:04:37,751 | INFO     | . payload setup = 8 s
[2026-01-08 20:05:26] 2026-01-09 01:04:37,751 | INFO     | . stage-in = 0 s
[2026-01-08 20:05:26] 2026-01-09 01:04:37,752 | INFO     | . payload execution = 10673 s
[2026-01-08 20:05:26] 2026-01-09 01:04:37,752 | INFO     | . stage-out = 0 s
[2026-01-08 20:05:26] 2026-01-09 01:04:37,752 | INFO     | . log creation = 0 s
[2026-01-08 20:05:26] 2026-01-09 01:04:37,752 | INFO     | ..............................
[2026-01-08 20:05:26] 2026-01-09 01:04:37,841 | INFO     | 
[2026-01-08 20:05:26] 2026-01-09 01:04:37,841 | INFO     | job summary report
[2026-01-08 20:05:26] 2026-01-09 01:04:37,841 | INFO     | --------------------------------------------------
[2026-01-08 20:05:26] 2026-01-09 01:04:37,842 | INFO     | PanDA job id: 6963151900
[2026-01-08 20:05:26] 2026-01-09 01:04:37,842 | INFO     | task id: 47898826
[2026-01-08 20:05:26] 2026-01-09 01:04:37,842 | INFO     | errors: (none)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,842 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 20:05:26] 2026-01-09 01:04:37,842 | INFO     | pilot state: finished 
[2026-01-08 20:05:26] 2026-01-09 01:04:37,843 | INFO     | transexitcode: 0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,843 | INFO     | exeerrorcode: 0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,843 | INFO     | exeerrordiag: 
[2026-01-08 20:05:26] 2026-01-09 01:04:37,843 | INFO     | exitcode: 0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,843 | INFO     | exitmsg: OK
[2026-01-08 20:05:26] 2026-01-09 01:04:37,843 | INFO     | cpuconsumptiontime: 78882 s
[2026-01-08 20:05:26] 2026-01-09 01:04:37,844 | INFO     | nevents: 400
[2026-01-08 20:05:26] 2026-01-09 01:04:37,844 | INFO     | neventsw: 0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,844 | INFO     | pid: 12826
[2026-01-08 20:05:26] 2026-01-09 01:04:37,844 | INFO     | pgrp: 12826
[2026-01-08 20:05:26] 2026-01-09 01:04:37,844 | INFO     | corecount: 8
[2026-01-08 20:05:26] 2026-01-09 01:04:37,844 | INFO     | event service: False
[2026-01-08 20:05:26] 2026-01-09 01:04:37,845 | INFO     | sizes: {0: 2283971, 6: 2284233, 11: 2284261, 10684: 2313234, 10685: 2322232, 10688: 2322288, 10698: 2322702}
[2026-01-08 20:05:26] 2026-01-09 01:04:37,845 | INFO     | --------------------------------------------------
[2026-01-08 20:05:26] 2026-01-09 01:04:37,845 | INFO     | 
[2026-01-08 20:05:26] 2026-01-09 01:04:37,845 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 20:05:26] 2026-01-09 01:04:37,874 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,875 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,875 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,875 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,875 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,876 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,876 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,876 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,876 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,877 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,877 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,877 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,877 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,877 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,878 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,878 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,878 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,878 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,878 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,878 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 20:05:26] 2026-01-09 01:04:37,879 | INFO     | job 6963151900 has completed (purged errors)
[2026-01-08 20:05:26] 2026-01-09 01:04:37,879 | INFO     | overall cleanup function is called
[2026-01-08 20:05:26] 2026-01-09 01:04:38,895 | INFO     | --- collectZombieJob: --- 10, [12826]
[2026-01-08 20:05:26] 2026-01-09 01:04:38,895 | INFO     | zombie collector waiting for pid 12826
[2026-01-08 20:05:26] 2026-01-09 01:04:38,896 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 20:05:26] 2026-01-09 01:04:38,896 | INFO     | collected zombie processes
[2026-01-08 20:05:26] 2026-01-09 01:04:38,896 | INFO     | will attempt to kill all subprocesses of pid=12826
[2026-01-08 20:05:26] 2026-01-09 01:04:38,988 | INFO     | process IDs to be killed: [12826] (in reverse order)
[2026-01-08 20:05:26] 2026-01-09 01:04:39,045 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 20:05:26] 2026-01-09 01:04:39,045 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 20:05:26] 2026-01-09 01:04:39,050 | INFO     | did not find any defunct processes belonging to 12826
[2026-01-08 20:05:26] 2026-01-09 01:04:39,054 | INFO     | did not find any defunct processes belonging to 12826
[2026-01-08 20:05:26] 2026-01-09 01:04:39,054 | INFO     | ready for new job
[2026-01-08 20:05:26] 2026-01-09 01:04:39,055 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 20:05:26] 2026-01-09 01:04:39,057 | INFO     | ***************************************
[2026-01-08 20:05:26] 2026-01-09 01:04:39,057 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 20:05:26] 2026-01-09 01:04:39,057 | INFO     | ***************************************
[2026-01-08 20:05:26] 2026-01-09 01:04:39,057 | INFO     | 
[2026-01-08 20:05:26] 2026-01-09 01:04:39,058 | INFO     | architecture information:
[2026-01-08 20:05:26] 2026-01-09 01:04:39,058 | INFO     | executing command: cat /etc/os-release
[2026-01-08 20:05:26] 2026-01-09 01:04:39,077 | INFO     | cat /etc/os-release:
[2026-01-08 20:05:26] NAME="CentOS Linux"
[2026-01-08 20:05:26] VERSION="7 (Core)"
[2026-01-08 20:05:26] ID="centos"
[2026-01-08 20:05:26] ID_LIKE="rhel fedora"
[2026-01-08 20:05:26] VERSION_ID="7"
[2026-01-08 20:05:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 20:05:26] ANSI_COLOR="0;31"
[2026-01-08 20:05:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 20:05:26] HOME_URL="https://www.centos.org/"
[2026-01-08 20:05:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 20:05:26] 
[2026-01-08 20:05:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 20:05:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 20:05:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 20:05:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 20:05:26] 
[2026-01-08 20:05:26] 2026-01-09 01:04:39,078 | INFO     | ***************************************
[2026-01-08 20:05:26] 2026-01-09 01:04:39,581 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 20:05:26] 2026-01-09 01:04:39,601 | INFO     | sufficient remaining disk space (18660458496 B)
[2026-01-08 20:05:26] 2026-01-09 01:04:39,602 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 20:05:26] 2026-01-09 01:04:39,602 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 20:05:26] 2026-01-09 01:04:39,602 | INFO     | update_server=False
[2026-01-08 20:05:26] 2026-01-09 01:04:39,603 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 20:05:26] 2026-01-09 01:04:39,603 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 20:05:26] 2026-01-09 01:04:39,603 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 20:05:26] 2026-01-09 01:04:39,604 | INFO     | all payload control threads have been joined
[2026-01-08 20:05:26] 2026-01-09 01:04:40,212 | INFO     | all data control threads have been joined
[2026-01-08 20:05:26] 2026-01-09 01:04:40,220 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 20:05:26] 2026-01-09 01:04:40,221 | INFO     | aborting loop
[2026-01-08 20:05:26] 2026-01-09 01:04:40,394 | INFO     | all job control threads have been joined
[2026-01-08 20:05:26] 2026-01-09 01:04:40,604 | INFO     | [job] retrieve thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:40,609 | INFO     | [job] queue monitor thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:40,610 | INFO     | [payload] control thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:40,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 20:05:26] 2026-01-09 01:04:41,214 | INFO     | [data] control thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:41,226 | INFO     | [job] job monitor thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:41,248 | INFO     | [job] validate thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:41,256 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:41,338 | INFO     | [payload] validate_post thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:41,357 | INFO     | [data] copytool_in thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:41,400 | INFO     | [job] control thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:41,569 | INFO     | [payload] failed_post thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:41,747 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:42,017 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:42,869 | INFO     | [data] copytool_out thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:43,610 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:04:49,700 | INFO     | job.realtimelogging is not enabled
[2026-01-08 20:05:26] 2026-01-09 01:04:50,701 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 20:05:26] 2026-01-09 01:05:09,216 | INFO     | PID=6288 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 20:05:26] 2026-01-09 01:05:09,216 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 20:05:26] 2026-01-09 01:05:09,216 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 20:05:26] 2026-01-09 01:05:09,216 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 20:05:26] 2026-01-09 01:05:19,058 | INFO     | [monitor] cgroup control has ended
[2026-01-08 20:05:26] 2026-01-09 01:05:20,986 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139960820283200)>', '<ExcThread(monitor, started 139959998592768)>']
[2026-01-08 20:05:26] 2026-01-09 01:05:21,266 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 20:05:26] 2026-01-09 01:05:21,267 | INFO     | [monitor] control thread has ended
[2026-01-08 20:05:26] 2026-01-09 01:05:26,011 | INFO     | all workflow threads have been joined
[2026-01-08 20:05:26] 2026-01-09 01:05:26,012 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 20:05:26] 2026-01-09 01:05:26,012 | INFO     | traces error code: 0
[2026-01-08 20:05:26] 2026-01-09 01:05:26,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 20:05:26] 2026-01-09 01:05:26,129 [wrapper] ==== pilot stdout END ====
[2026-01-08 20:05:26] 2026-01-09 01:05:26,134 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 20:05:26] 2026-01-09 01:05:26,138 [wrapper] pilotpid: 6288
[2026-01-08 20:05:26] 2026-01-09 01:05:26,143 [wrapper] Pilot exit status: 0
[2026-01-08 20:05:26] 2026-01-09 01:05:26,161 [wrapper] pandaids: 6963151900
[2026-01-08 20:05:26] 2026-01-09 01:05:26,213 [wrapper] cleanup supervisor_pilot 19281 6289
[2026-01-08 20:05:26] 2026-01-09 01:05:26,219 [wrapper] Test setup, not cleaning
[2026-01-08 20:05:26] 2026-01-09 01:05:26,223 [wrapper] apfmon messages muted
[2026-01-08 20:05:26] 2026-01-09 01:05:26,228 [wrapper] ==== wrapper stdout END ====
[2026-01-08 20:05:26] 2026-01-09 01:05:26,232 [wrapper] ==== wrapper stderr END ====
[2026-01-08 20:05:26]  *** Error codes and diagnostics ***
[2026-01-08 20:05:26]     "exeErrorCode": 0,
[2026-01-08 20:05:26]     "exeErrorDiag": "",
[2026-01-08 20:05:26]     "pilotErrorCode": 0,
[2026-01-08 20:05:26]     "pilotErrorDiag": "",
[2026-01-08 20:05:26]  *** Listing of results directory ***
[2026-01-08 20:05:26] total 438928
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 11:02 pilot3.tar.gz
[2026-01-08 20:05:26] -rwx------ 1 boincer umatlas     36322 Jan  8 11:05 runpilot2-wrapper.sh
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 11:09 queuedata.json
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas       100 Jan  8 17:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 20:05:26] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 17:05 run_atlas
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas       105 Jan  8 17:05 job.xml
[2026-01-08 20:05:26] -rw-r--r-- 2 boincer umatlas 222535098 Jan  8 17:05 EVNT.47898824._001130.pool.root.1
[2026-01-08 20:05:26] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 17:05 start_atlas.sh
[2026-01-08 20:05:26] drwxrwx--x 2 boincer umatlas      4096 Jan  8 17:05 shared
[2026-01-08 20:05:26] -rw-r--r-- 2 boincer umatlas    592398 Jan  8 17:05 input.tar.gz
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas         0 Jan  8 17:05 boinc_lockfile
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas      2520 Jan  8 17:05 pandaJob.out
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas        57 Jan  8 17:05 setup.sh.local
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas    989845 Jan  8 17:05 agis_schedconf.cvmfs.json
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas   1516240 Jan  8 17:06 agis_ddmendpoints.agis.ALL.json
[2026-01-08 20:05:26] drwx------ 5 boincer umatlas      4096 Jan  8 17:06 pilot3
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas      5911 Jan  8 20:00 init_data.xml
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas 219239781 Jan  8 20:03 HITS.47898826._028851.pool.root.1
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas      1048 Jan  8 20:04 memory_monitor_summary.json
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas       531 Jan  8 20:04 boinc_task_state.xml
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas    399712 Jan  8 20:04 log.47898826._028851.job.log.tgz.1
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas        95 Jan  8 20:04 pilot_heartbeat.json
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas      7844 Jan  8 20:04 heartbeat.json
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas      8192 Jan  8 20:04 boinc_mmap_file
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas        28 Jan  8 20:04 wrapper_checkpoint.txt
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas      4817 Jan  8 20:05 pilotlog.txt
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas   1490590 Jan  8 20:05 log.47898826._028851.job.log.1
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas       357 Jan  8 20:05 output.list
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas       620 Jan  8 20:05 runtime_log
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas   1904640 Jan  8 20:05 result.tar.gz
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas      9343 Jan  8 20:05 runtime_log.err
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas       662 Jan  8 20:05 i6fKDmQh7x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDms2kKDmr35ocm.diag
[2026-01-08 20:05:26] -rw-r--r-- 1 boincer umatlas     20911 Jan  8 20:05 stderr.txt
[2026-01-08 20:05:26] HITS file was successfully produced:
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas 219239781 Jan  8 20:03 shared/HITS.pool.root.1
[2026-01-08 20:05:26]  *** Contents of shared directory: ***
[2026-01-08 20:05:26] total 433884
[2026-01-08 20:05:26] -rw-r--r-- 2 boincer umatlas 222535098 Jan  8 17:05 ATLAS.root_0
[2026-01-08 20:05:26] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 17:05 start_atlas.sh
[2026-01-08 20:05:26] -rw-r--r-- 2 boincer umatlas    592398 Jan  8 17:05 input.tar.gz
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas 219239781 Jan  8 20:03 HITS.pool.root.1
[2026-01-08 20:05:26] -rw------- 1 boincer umatlas   1904640 Jan  8 20:05 result.tar.gz
20:05:28 (2588): run_atlas exited; CPU time 78841.504007
20:05:28 (2588): called boinc_finish(0)

</stderr_txt>
]]>

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