Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:46:29 (986): wrapper (7.7.26015): starting
16:46:29 (986): wrapper: running run_atlas (--nthreads 12)
[2026-01-08 16:46:29] Arguments: --nthreads 12
[2026-01-08 16:46:29] Threads: 12
[2026-01-08 16:46:29] Checking for CVMFS
[2026-01-08 16:46:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-08 16:46:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-08 16:46:29] Running cvmfs_config stat atlas.cern.ch
[2026-01-08 16:46:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-08 16:46:29] 2.11.2.0 6893 180073 98328 154920 0 59 11600749 20275201 1 130560 0 69173229 99.912 9995267 34961 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-08 16:46:29] CVMFS is ok
[2026-01-08 16:46:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-08 16:46:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-08 16:46:29] Further information can be found at the LHC@home message board.
[2026-01-08 16:46:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-08 16:46:29] Checking for apptainer binary...
[2026-01-08 16:46:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-08 16:46:29] Running /usr/bin/apptainer --version
[2026-01-08 16:46:29] apptainer version 1.3.2-1.el7
[2026-01-08 16:46:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-08 16:46:31] c-205-3.aglt2.org
[2026-01-08 16:46:31] apptainer works
[2026-01-08 16:46:31] Set ATHENA_PROC_NUMBER=12
[2026-01-08 16:46:31] Set ATHENA_CORE_NUMBER=12
[2026-01-08 16:46:31] Starting ATLAS job with PandaID=6963076883
[2026-01-08 16:46:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-08 20:42:13]  *** The last 200 lines of the pilot log: ***
[2026-01-08 20:42:14] 2026-01-09 01:41:22,147 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-08 20:42:14] 2026-01-09 01:41:22,151 | INFO     | fitting pss+swap vs Time
[2026-01-08 20:42:14] 2026-01-09 01:41:22,151 | INFO     | sum of square deviations: 3822192323.073606
[2026-01-08 20:42:14] 2026-01-09 01:41:22,152 | INFO     | sum of deviations: 42170030360.835365
[2026-01-08 20:42:14] 2026-01-09 01:41:22,153 | INFO     | mean x: 1767915851.17316
[2026-01-08 20:42:14] 2026-01-09 01:41:22,153 | INFO     | mean y: 3210226.554112554
[2026-01-08 20:42:14] 2026-01-09 01:41:22,153 | INFO     | intersect: -19502104738.712368
[2026-01-08 20:42:14] 2026-01-09 01:41:22,153 | INFO     | chi2: 6.407780873355012
[2026-01-08 20:42:14] 2026-01-09 01:41:22,154 | INFO     | sum of square deviations: 3579344155.4203506
[2026-01-08 20:42:14] 2026-01-09 01:41:22,155 | INFO     | sum of deviations: 119674438504.42912
[2026-01-08 20:42:14] 2026-01-09 01:41:22,155 | INFO     | mean x: 1767915698.6769912
[2026-01-08 20:42:14] 2026-01-09 01:41:22,155 | INFO     | mean y: 3258733.1017699116
[2026-01-08 20:42:14] 2026-01-09 01:41:22,155 | INFO     | intersect: -59106541659.22391
[2026-01-08 20:42:14] 2026-01-09 01:41:22,156 | INFO     | chi2: 3.5913545733822487
[2026-01-08 20:42:14] 2026-01-09 01:41:22,156 | INFO     | current chi2=3.5913545733822487 (change=43.95322430085109 %)
[2026-01-08 20:42:14] 2026-01-09 01:41:22,156 | INFO     | sum of square deviations: 3347007812.7601843
[2026-01-08 20:42:14] 2026-01-09 01:41:22,157 | INFO     | sum of deviations: 162265739681.80548
[2026-01-08 20:42:14] 2026-01-09 01:41:22,158 | INFO     | mean x: 1767915546.1809955
[2026-01-08 20:42:14] 2026-01-09 01:41:22,158 | INFO     | mean y: 3286653.4298642534
[2026-01-08 20:42:14] 2026-01-09 01:41:22,158 | INFO     | intersect: -85706738492.71608
[2026-01-08 20:42:14] 2026-01-09 01:41:22,158 | INFO     | chi2: 2.6843244478636508
[2026-01-08 20:42:14] 2026-01-09 01:41:22,158 | INFO     | current chi2=2.6843244478636508 (change=25.255933575625182 %)
[2026-01-08 20:42:14] 2026-01-09 01:41:22,159 | INFO     | sum of square deviations: 3124937494.958341
[2026-01-08 20:42:14] 2026-01-09 01:41:22,160 | INFO     | sum of deviations: 166736816676.99997
[2026-01-08 20:42:14] 2026-01-09 01:41:22,160 | INFO     | mean x: 1767915393.6805556
[2026-01-08 20:42:14] 2026-01-09 01:41:22,160 | INFO     | mean y: 3289610.3333333335
[2026-01-08 20:42:14] 2026-01-09 01:41:22,160 | INFO     | intersect: -94327104316.63087
[2026-01-08 20:42:14] 2026-01-09 01:41:22,160 | INFO     | chi2: 2.553811323297961
[2026-01-08 20:42:14] 2026-01-09 01:41:22,161 | INFO     | current chi2=2.553811323297961 (change=4.862047308385549 %)
[2026-01-08 20:42:14] 2026-01-09 01:41:22,161 | INFO     | right removable region: 215
[2026-01-08 20:42:14] 2026-01-09 01:41:22,161 | INFO     | sum of square deviations: 3579319755.4203506
[2026-01-08 20:42:14] 2026-01-09 01:41:22,162 | INFO     | sum of deviations: -29787577837.12831
[2026-01-08 20:42:14] 2026-01-09 01:41:22,162 | INFO     | mean x: 1767916003.6769912
[2026-01-08 20:42:14] 2026-01-09 01:41:22,163 | INFO     | mean y: 3255160.3407079647
[2026-01-08 20:42:14] 2026-01-09 01:41:22,163 | INFO     | intersect: 14716088650.359161
[2026-01-08 20:42:14] 2026-01-09 01:41:22,163 | INFO     | chi2: 3.9901430029573026
[2026-01-08 20:42:14] 2026-01-09 01:41:22,163 | INFO     | current chi2=3.9901430029573026 (change=37.7297213837444 %)
[2026-01-08 20:42:14] 2026-01-09 01:41:22,163 | INFO     | sum of square deviations: 3346959012.7601843
[2026-01-08 20:42:14] 2026-01-09 01:41:22,165 | INFO     | sum of deviations: -43413471782.94119
[2026-01-08 20:42:14] 2026-01-09 01:41:22,165 | INFO     | mean x: 1767916156.1809955
[2026-01-08 20:42:14] 2026-01-09 01:41:22,165 | INFO     | mean y: 3264087.8235294116
[2026-01-08 20:42:14] 2026-01-09 01:41:22,165 | INFO     | intersect: 22934939638.183453
[2026-01-08 20:42:14] 2026-01-09 01:41:22,165 | INFO     | chi2: 3.9257868772617104
[2026-01-08 20:42:14] 2026-01-09 01:41:22,166 | INFO     | current chi2=3.9257868772617104 (change=1.6128776750080027 %)
[2026-01-08 20:42:14] 2026-01-09 01:41:22,166 | INFO     | left removable region: 20
[2026-01-08 20:42:14] 2026-01-09 01:41:22,166 | INFO     | sum of square deviations: 2299215446.5948734
[2026-01-08 20:42:14] 2026-01-09 01:41:22,167 | INFO     | sum of deviations: 67652762152.76411
[2026-01-08 20:42:14] 2026-01-09 01:41:22,167 | INFO     | mean x: 1767915973.194872
[2026-01-08 20:42:14] 2026-01-09 01:41:22,167 | INFO     | mean y: 3360879.164102564
[2026-01-08 20:42:14] 2026-01-09 01:41:22,167 | INFO     | intersect: -52016296094.5913
[2026-01-08 20:42:14] 2026-01-09 01:41:22,168 | INFO     | chi2: 0.010444899307401286
[2026-01-08 20:42:14] 2026-01-09 01:41:22,168 | INFO     | current memory leak: 29.42 B/s (using 195 data points, chi2=0.01)
[2026-01-08 20:42:14] 2026-01-09 01:41:22,168 | INFO     | could have reported an average CPU frequency of 2302 MHz (11 samples)
[2026-01-08 20:42:14] 2026-01-09 01:41:22,168 | INFO     | ..............................
[2026-01-08 20:42:14] 2026-01-09 01:41:22,168 | INFO     | . Timing measurements:
[2026-01-08 20:42:14] 2026-01-09 01:41:22,168 | INFO     | . get job = 0 s
[2026-01-08 20:42:14] 2026-01-09 01:41:22,169 | INFO     | . initial setup = 2 s
[2026-01-08 20:42:14] 2026-01-09 01:41:22,169 | INFO     | . payload setup = 9 s
[2026-01-08 20:42:14] 2026-01-09 01:41:22,169 | INFO     | . stage-in = 0 s
[2026-01-08 20:42:14] 2026-01-09 01:41:22,169 | INFO     | . payload execution = 14036 s
[2026-01-08 20:42:14] 2026-01-09 01:41:22,169 | INFO     | . stage-out = 2 s
[2026-01-08 20:42:14] 2026-01-09 01:41:22,169 | INFO     | . log creation = 0 s
[2026-01-08 20:42:14] 2026-01-09 01:41:22,169 | INFO     | ..............................
[2026-01-08 20:42:14] 2026-01-09 01:41:22,249 | INFO     | 
[2026-01-08 20:42:14] 2026-01-09 01:41:22,249 | INFO     | job summary report
[2026-01-08 20:42:14] 2026-01-09 01:41:22,249 | INFO     | --------------------------------------------------
[2026-01-08 20:42:14] 2026-01-09 01:41:22,249 | INFO     | PanDA job id: 6963076883
[2026-01-08 20:42:14] 2026-01-09 01:41:22,249 | INFO     | task id: 47962010
[2026-01-08 20:42:14] 2026-01-09 01:41:22,252 | INFO     | errors: (none)
[2026-01-08 20:42:14] 2026-01-09 01:41:22,253 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-08 20:42:14] 2026-01-09 01:41:22,253 | INFO     | pilot state: finished 
[2026-01-08 20:42:14] 2026-01-09 01:41:22,253 | INFO     | transexitcode: 0
[2026-01-08 20:42:14] 2026-01-09 01:41:22,253 | INFO     | exeerrorcode: 0
[2026-01-08 20:42:14] 2026-01-09 01:41:22,253 | INFO     | exeerrordiag: 
[2026-01-08 20:42:14] 2026-01-09 01:41:22,254 | INFO     | exitcode: 0
[2026-01-08 20:42:14] 2026-01-09 01:41:22,254 | INFO     | exitmsg: OK
[2026-01-08 20:42:14] 2026-01-09 01:41:22,254 | INFO     | cpuconsumptiontime: 157138 s
[2026-01-08 20:42:14] 2026-01-09 01:41:22,254 | INFO     | nevents: 450
[2026-01-08 20:42:14] 2026-01-09 01:41:22,254 | INFO     | neventsw: 0
[2026-01-08 20:42:14] 2026-01-09 01:41:22,255 | INFO     | pid: 11397
[2026-01-08 20:42:14] 2026-01-09 01:41:22,255 | INFO     | pgrp: 11397
[2026-01-08 20:42:14] 2026-01-09 01:41:22,255 | INFO     | corecount: 12
[2026-01-08 20:42:14] 2026-01-09 01:41:22,255 | INFO     | event service: False
[2026-01-08 20:42:14] 2026-01-09 01:41:22,255 | INFO     | sizes: {0: 2283789, 1: 2284645, 6: 2284907, 12: 2284935, 14049: 2316616, 14052: 2325794, 14060: 2326012}
[2026-01-08 20:42:14] 2026-01-09 01:41:22,255 | INFO     | --------------------------------------------------
[2026-01-08 20:42:14] 2026-01-09 01:41:22,255 | INFO     | 
[2026-01-08 20:42:14] 2026-01-09 01:41:22,256 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-08 20:42:14] 2026-01-09 01:41:22,279 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,280 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,280 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,280 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,280 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,281 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,281 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,281 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,281 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,281 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,281 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,282 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,282 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,282 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,283 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,283 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-08 20:42:14] 2026-01-09 01:41:22,283 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,283 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-08 20:42:14] 2026-01-09 01:41:22,284 | INFO     | job 6963076883 has completed (purged errors)
[2026-01-08 20:42:14] 2026-01-09 01:41:22,284 | INFO     | overall cleanup function is called
[2026-01-08 20:42:14] 2026-01-09 01:41:22,463 | INFO     | PID=4827 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 20:42:14] 2026-01-09 01:41:23,300 | INFO     | --- collectZombieJob: --- 10, [11397]
[2026-01-08 20:42:14] 2026-01-09 01:41:23,300 | INFO     | zombie collector waiting for pid 11397
[2026-01-08 20:42:14] 2026-01-09 01:41:23,300 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-08 20:42:14] 2026-01-09 01:41:23,300 | INFO     | collected zombie processes
[2026-01-08 20:42:14] 2026-01-09 01:41:23,301 | INFO     | will attempt to kill all subprocesses of pid=11397
[2026-01-08 20:42:14] 2026-01-09 01:41:23,387 | INFO     | process IDs to be killed: [11397] (in reverse order)
[2026-01-08 20:42:14] 2026-01-09 01:41:23,436 | WARNING  | found no corresponding commands to process id(s)
[2026-01-08 20:42:14] 2026-01-09 01:41:23,437 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-08 20:42:14] 2026-01-09 01:41:23,439 | INFO     | did not find any defunct processes belonging to 11397
[2026-01-08 20:42:14] 2026-01-09 01:41:23,442 | INFO     | did not find any defunct processes belonging to 11397
[2026-01-08 20:42:14] 2026-01-09 01:41:23,443 | INFO     | ready for new job
[2026-01-08 20:42:14] 2026-01-09 01:41:23,443 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-08 20:42:14] 2026-01-09 01:41:23,445 | INFO     | ***************************************
[2026-01-08 20:42:14] 2026-01-09 01:41:23,445 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-08 20:42:14] 2026-01-09 01:41:23,445 | INFO     | ***************************************
[2026-01-08 20:42:14] 2026-01-09 01:41:23,445 | INFO     | 
[2026-01-08 20:42:14] 2026-01-09 01:41:23,446 | INFO     | architecture information:
[2026-01-08 20:42:14] 2026-01-09 01:41:23,447 | INFO     | executing command: cat /etc/os-release
[2026-01-08 20:42:14] 2026-01-09 01:41:23,461 | INFO     | cat /etc/os-release:
[2026-01-08 20:42:14] NAME="CentOS Linux"
[2026-01-08 20:42:14] VERSION="7 (Core)"
[2026-01-08 20:42:14] ID="centos"
[2026-01-08 20:42:14] ID_LIKE="rhel fedora"
[2026-01-08 20:42:14] VERSION_ID="7"
[2026-01-08 20:42:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-08 20:42:14] ANSI_COLOR="0;31"
[2026-01-08 20:42:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-08 20:42:14] HOME_URL="https://www.centos.org/"
[2026-01-08 20:42:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-08 20:42:14] 
[2026-01-08 20:42:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-08 20:42:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-08 20:42:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-08 20:42:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-08 20:42:14] 
[2026-01-08 20:42:14] 2026-01-09 01:41:23,462 | INFO     | ***************************************
[2026-01-08 20:42:14] 2026-01-09 01:41:23,965 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-08 20:42:14] 2026-01-09 01:41:23,981 | INFO     | sufficient remaining disk space (28911337472 B)
[2026-01-08 20:42:14] 2026-01-09 01:41:23,981 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-08 20:42:14] 2026-01-09 01:41:23,982 | INFO     | current server update state: UPDATING_FINAL
[2026-01-08 20:42:14] 2026-01-09 01:41:23,982 | INFO     | update_server=False
[2026-01-08 20:42:14] 2026-01-09 01:41:23,982 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-08 20:42:14] 2026-01-09 01:41:23,982 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-08 20:42:14] 2026-01-09 01:41:24,258 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-08 20:42:14] 2026-01-09 01:41:24,258 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-08 20:42:14] 2026-01-09 01:41:24,258 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-08 20:42:14] 2026-01-09 01:41:24,258 | INFO     | will abort loop
[2026-01-08 20:42:14] 2026-01-09 01:41:24,336 | INFO     | all data control threads have been joined
[2026-01-08 20:42:14] 2026-01-09 01:41:24,363 | INFO     | all job control threads have been joined
[2026-01-08 20:42:14] 2026-01-09 01:41:24,472 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-08 20:42:14] 2026-01-09 01:41:24,555 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-08 20:42:14] 2026-01-09 01:41:24,896 | INFO     | all payload control threads have been joined
[2026-01-08 20:42:14] 2026-01-09 01:41:24,988 | INFO     | [job] retrieve thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:24,988 | INFO     | [job] queue monitor thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:25,011 | INFO     | [payload] validate_pre thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:25,069 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:25,155 | INFO     | [payload] validate_post thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:25,198 | INFO     | [data] copytool_in thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:25,264 | INFO     | [job] job monitor thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:25,338 | INFO     | [data] control thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:25,356 | INFO     | [payload] execute_payloads thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:25,371 | INFO     | [job] control thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:25,684 | INFO     | [payload] failed_post thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:25,902 | INFO     | [payload] control thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:26,110 | INFO     | [job] validate thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:26,265 | INFO     | [job] create_data_payload thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:26,478 | INFO     | [data] copytool_out thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:28,561 | INFO     | [data] queue_monitor thread has finished
[2026-01-08 20:42:14] 2026-01-09 01:41:54,666 | INFO     | PID=4827 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-08 20:42:14] 2026-01-09 01:41:54,667 | INFO     | found 0 job(s) in 20 queues
[2026-01-08 20:42:14] 2026-01-09 01:41:54,667 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-08 20:42:14] 2026-01-09 01:41:54,667 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-08 20:42:14] 2026-01-09 01:42:08,392 | INFO     | [monitor] cgroup control has ended
[2026-01-08 20:42:14] 2026-01-09 01:42:08,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140715837114176)>', '<ExcThread(monitor, started 140714713270016)>']
[2026-01-08 20:42:14] 2026-01-09 01:42:08,738 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-08 20:42:14] 2026-01-09 01:42:08,739 | INFO     | [monitor] control thread has ended
[2026-01-08 20:42:14] 2026-01-09 01:42:13,676 | INFO     | all workflow threads have been joined
[2026-01-08 20:42:14] 2026-01-09 01:42:13,676 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-08 20:42:14] 2026-01-09 01:42:13,685 | INFO     | traces error code: 0
[2026-01-08 20:42:14] 2026-01-09 01:42:13,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-08 20:42:14] 2026-01-09 01:42:13,785 [wrapper] ==== pilot stdout END ====
[2026-01-08 20:42:14] 2026-01-09 01:42:13,789 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-08 20:42:14] 2026-01-09 01:42:13,792 [wrapper] pilotpid: 4827
[2026-01-08 20:42:14] 2026-01-09 01:42:13,796 [wrapper] Pilot exit status: 0
[2026-01-08 20:42:14] 2026-01-09 01:42:13,810 [wrapper] pandaids: 6963076883
[2026-01-08 20:42:14] 2026-01-09 01:42:13,858 [wrapper] cleanup supervisor_pilot 23007 4828
[2026-01-08 20:42:14] 2026-01-09 01:42:13,862 [wrapper] Test setup, not cleaning
[2026-01-08 20:42:14] 2026-01-09 01:42:13,866 [wrapper] apfmon messages muted
[2026-01-08 20:42:14] 2026-01-09 01:42:13,870 [wrapper] ==== wrapper stdout END ====
[2026-01-08 20:42:14] 2026-01-09 01:42:13,874 [wrapper] ==== wrapper stderr END ====
[2026-01-08 20:42:14]  *** Error codes and diagnostics ***
[2026-01-08 20:42:14]     "exeErrorCode": 0,
[2026-01-08 20:42:14]     "exeErrorDiag": "",
[2026-01-08 20:42:14]     "pilotErrorCode": 0,
[2026-01-08 20:42:14]     "pilotErrorDiag": "",
[2026-01-08 20:42:14]  *** Listing of results directory ***
[2026-01-08 20:42:14] total 791564
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas    579449 Jan  8 06:09 pilot3.tar.gz
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas      5112 Jan  8 06:56 queuedata.json
[2026-01-08 20:42:14] -rwx------ 1 boincer umatlas     36322 Jan  8 06:56 runpilot2-wrapper.sh
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas       100 Jan  8 16:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-08 20:42:14] -rwxr-xr-x 1 boincer umatlas      7986 Jan  8 16:46 run_atlas
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas       105 Jan  8 16:46 job.xml
[2026-01-08 20:42:14] -rw-r--r-- 2 boincer umatlas 394246431 Jan  8 16:46 EVNT.47962006._000040.pool.root.1
[2026-01-08 20:42:14] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 16:46 start_atlas.sh
[2026-01-08 20:42:14] drwxrwx--x 2 boincer umatlas      4096 Jan  8 16:46 shared
[2026-01-08 20:42:14] -rw-r--r-- 2 boincer umatlas    592612 Jan  8 16:46 input.tar.gz
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas         0 Jan  8 16:46 boinc_lockfile
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas      2889 Jan  8 16:46 pandaJob.out
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas        57 Jan  8 16:46 setup.sh.local
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas    989845 Jan  8 16:46 agis_schedconf.cvmfs.json
[2026-01-08 20:42:14] drwx------ 5 boincer umatlas      4096 Jan  8 16:46 pilot3
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas       533 Jan  8 20:29 boinc_task_state.xml
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas      5954 Jan  8 20:39 init_data.xml
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas 404625916 Jan  8 20:40 HITS.47962010._000212.pool.root.1
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas      1058 Jan  8 20:41 memory_monitor_summary.json
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas   1516240 Jan  8 20:41 agis_ddmendpoints.agis.ALL.json
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas   1889163 Jan  8 20:41 log.47962010._000212.job.log.tgz.1
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas      8663 Jan  8 20:41 heartbeat.json
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas        95 Jan  8 20:41 pilot_heartbeat.json
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas      8192 Jan  8 20:42 boinc_mmap_file
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas        29 Jan  8 20:42 wrapper_checkpoint.txt
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas      4931 Jan  8 20:42 pilotlog.txt
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas   1991022 Jan  8 20:42 log.47962010._000212.job.log.1
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas       353 Jan  8 20:42 output.list
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas       620 Jan  8 20:42 runtime_log
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas   3901440 Jan  8 20:42 result.tar.gz
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas       668 Jan  8 20:42 Vr9MDmAo3x8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfTkKDmVC4e2m.diag
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas      9340 Jan  8 20:42 runtime_log.err
[2026-01-08 20:42:14] -rw-r--r-- 1 boincer umatlas     21109 Jan  8 20:42 stderr.txt
[2026-01-08 20:42:14] HITS file was successfully produced:
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas 404625916 Jan  8 20:40 shared/HITS.pool.root.1
[2026-01-08 20:42:14]  *** Contents of shared directory: ***
[2026-01-08 20:42:14] total 784568
[2026-01-08 20:42:14] -rw-r--r-- 2 boincer umatlas 394246431 Jan  8 16:46 ATLAS.root_0
[2026-01-08 20:42:14] -rw-r--r-- 2 boincer umatlas     15847 Jan  8 16:46 start_atlas.sh
[2026-01-08 20:42:14] -rw-r--r-- 2 boincer umatlas    592612 Jan  8 16:46 input.tar.gz
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas 404625916 Jan  8 20:40 HITS.pool.root.1
[2026-01-08 20:42:14] -rw------- 1 boincer umatlas   3901440 Jan  8 20:42 result.tar.gz
20:42:15 (986): run_atlas exited; CPU time 154391.029242
20:42:15 (986): called boinc_finish(0)

</stderr_txt>
]]>

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